Wall clock time and date at job start Tue Mar 31 2020 12:31:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.46989 * 2 1 4 4 C 1.50698 * 109.46703 * 240.00176 * 2 1 3 5 5 H 1.08002 * 120.00055 * 239.99416 * 4 2 1 6 6 C 1.37878 * 120.00491 * 60.00245 * 4 2 1 7 7 N 1.31520 * 119.99451 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 120.00316 * 179.97438 * 6 4 2 9 9 H 1.48507 * 109.46947 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.47217 * 119.99591 * 8 6 4 11 11 H 1.48494 * 109.47025 * 240.00051 * 8 6 4 12 12 C 1.52998 * 109.47068 * 119.99897 * 2 1 3 13 13 N 1.46490 * 109.47389 * 299.99988 * 12 2 1 14 14 C 1.34779 * 120.00254 * 180.02562 * 13 12 2 15 15 O 1.21277 * 119.99967 * 359.97438 * 14 13 12 16 16 C 1.50698 * 120.00071 * 179.97438 * 14 13 12 17 17 C 1.53005 * 109.46912 * 179.97438 * 16 14 13 18 18 C 1.50698 * 109.46912 * 179.97438 * 17 16 14 19 19 C 1.38364 * 119.85089 * 90.00370 * 18 17 16 20 20 C 1.37967 * 120.14264 * 179.97438 * 19 18 17 21 21 C 1.39570 * 119.85310 * 0.02562 * 20 19 18 22 22 C 1.47842 * 120.14248 * 179.97438 * 21 20 19 23 23 N 1.34784 * 120.00082 * 180.02562 * 22 21 20 24 24 O 1.21552 * 120.00146 * 359.97438 * 22 21 20 25 25 C 1.39581 * 119.71335 * 0.25292 * 21 20 19 26 26 C 1.37955 * 119.84955 * 359.46623 * 25 21 20 27 27 H 1.08997 * 109.46921 * 299.99979 * 1 2 3 28 28 H 1.09005 * 109.47054 * 60.00101 * 1 2 3 29 29 H 1.09003 * 109.47191 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47369 * 180.02562 * 3 2 1 31 31 H 1.09003 * 109.47659 * 299.99826 * 3 2 1 32 32 H 1.08997 * 109.47272 * 60.00236 * 3 2 1 33 33 H 0.96998 * 119.99250 * 180.02562 * 7 6 4 34 34 H 1.08999 * 109.46979 * 179.97438 * 12 2 1 35 35 H 1.09001 * 109.46921 * 60.00523 * 12 2 1 36 36 H 0.97009 * 120.00100 * 0.02562 * 13 12 2 37 37 H 1.09005 * 109.46963 * 60.00256 * 16 14 13 38 38 H 1.08993 * 109.47712 * 300.00492 * 16 14 13 39 39 H 1.09000 * 109.46388 * 60.00658 * 17 16 14 40 40 H 1.08989 * 109.47300 * 300.00197 * 17 16 14 41 41 H 1.07998 * 119.92639 * 359.97438 * 19 18 17 42 42 H 1.07996 * 120.07026 * 180.02562 * 20 19 18 43 43 H 0.97000 * 119.99339 * 359.97438 * 23 22 21 44 44 H 0.96995 * 120.00015 * 179.72522 * 23 22 21 45 45 H 1.07995 * 120.07371 * 179.72649 * 25 21 20 46 46 H 1.08002 * 119.92829 * 180.27238 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 0.9427 0.8298 -2.6034 8 14 2.3224 -1.1195 -4.0081 9 1 3.1483 -2.2857 -3.6039 10 1 1.1677 -1.5866 -4.8165 11 1 3.1471 -0.1858 -4.8161 12 6 2.0400 -0.7212 1.2492 13 7 1.5518 -0.0307 2.4453 14 6 1.8778 -0.4908 3.6695 15 8 2.5750 -1.4769 3.7808 16 6 1.3759 0.2199 4.8999 17 6 1.8859 -0.5015 6.1492 18 6 1.3845 0.2097 7.3796 19 6 0.1751 -0.1575 7.9425 20 6 -0.2894 0.4891 9.0693 21 6 0.4634 1.5160 9.6410 22 6 -0.0284 2.2136 10.8481 23 7 0.7006 3.2052 11.3976 24 8 -1.0908 1.8935 11.3446 25 6 1.6799 1.8854 9.0647 26 6 2.1356 1.2268 7.9415 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9564 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 0.7082 1.1609 -3.4844 34 1 3.1300 -0.7216 1.2490 35 1 1.6767 -1.7489 1.2492 36 1 0.9937 0.7578 2.3564 37 1 0.2859 0.2199 4.9003 38 1 1.7392 1.2475 4.8996 39 1 2.9759 -0.5017 6.1489 40 1 1.5222 -1.5289 6.1493 41 1 -0.4066 -0.9520 7.4989 42 1 -1.2333 0.2013 9.5079 43 1 1.5482 3.4608 11.0011 44 1 0.3760 3.6655 12.1872 45 1 2.2650 2.6821 9.4997 46 1 3.0788 1.5086 7.4971 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458045910.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:31:39 Heat of formation + Delta-G solvation = -73.812367 kcal Electronic energy + Delta-G solvation = -25357.170000 eV Core-core repulsion = 21631.623625 eV Total energy + Delta-G solvation = -3725.546375 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.49479 -39.45401 -38.61389 -36.44684 -34.49756 -33.79464 -33.29457 -31.25482 -31.01429 -29.96633 -26.27467 -25.75624 -25.37836 -24.34518 -23.00893 -22.41545 -20.63977 -19.95667 -18.79770 -18.58507 -17.25783 -17.06962 -15.85436 -15.77556 -15.44078 -15.39729 -15.15366 -15.05430 -14.85223 -14.60025 -13.96593 -13.69417 -13.48180 -13.38073 -13.06686 -12.83994 -12.49394 -12.23137 -12.00400 -11.67338 -11.55897 -11.39070 -11.22208 -11.02931 -10.89528 -10.68338 -10.44939 -10.41623 -10.22753 -10.15041 -9.66526 -9.62177 -9.34121 -9.31114 -9.02288 -8.79999 -8.48109 -8.33651 -6.04603 -4.14567 0.47495 1.03346 2.49531 3.02376 3.08950 3.25358 3.34098 3.38375 3.48234 3.74543 4.35289 4.39180 4.39403 4.57537 4.67387 4.92894 4.94659 5.03091 5.18629 5.22271 5.24920 5.46736 5.57008 5.61988 5.76887 5.90728 5.99872 6.02304 6.21268 6.29451 6.30927 6.33595 6.48133 6.54689 6.75346 6.79421 6.88744 6.90466 6.98828 7.01024 7.32670 7.52839 7.67284 7.83233 7.98271 8.02869 8.12987 8.36052 8.67558 8.86533 9.51407 10.96821 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.033025 B = 0.001906 C = 0.001878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.628434 B =14689.950931 C =14904.094702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.055 3.945 3 C -0.131 4.131 4 C -0.505 4.505 5 H 0.058 0.942 6 C 0.065 3.935 7 N -0.886 5.886 8 Si 0.893 3.107 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.285 1.285 12 C 0.131 3.869 13 N -0.717 5.717 14 C 0.503 3.497 15 O -0.555 6.555 16 C -0.136 4.136 17 C -0.070 4.070 18 C -0.047 4.047 19 C -0.124 4.124 20 C -0.055 4.055 21 C -0.151 4.151 22 C 0.565 3.435 23 N -0.852 5.852 24 O -0.543 6.543 25 C -0.083 4.083 26 C -0.125 4.125 27 H 0.006 0.994 28 H 0.085 0.915 29 H 0.026 0.974 30 H 0.026 0.974 31 H 0.085 0.915 32 H 0.006 0.994 33 H 0.259 0.741 34 H 0.054 0.946 35 H 0.054 0.946 36 H 0.398 0.602 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.084 0.916 40 H 0.084 0.916 41 H 0.132 0.868 42 H 0.136 0.864 43 H 0.401 0.599 44 H 0.404 0.596 45 H 0.125 0.875 46 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.507 5.951 23.043 23.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.054 3.946 3 C -0.188 4.188 4 C -0.543 4.543 5 H 0.076 0.924 6 C -0.136 4.136 7 N -0.524 5.524 8 Si 0.721 3.279 9 H -0.198 1.198 10 H -0.211 1.211 11 H -0.211 1.211 12 C 0.009 3.991 13 N -0.368 5.368 14 C 0.288 3.712 15 O -0.434 6.434 16 C -0.176 4.176 17 C -0.108 4.108 18 C -0.047 4.047 19 C -0.142 4.142 20 C -0.074 4.074 21 C -0.154 4.154 22 C 0.351 3.649 23 N -0.416 5.416 24 O -0.420 6.420 25 C -0.102 4.102 26 C -0.143 4.143 27 H 0.025 0.975 28 H 0.104 0.896 29 H 0.045 0.955 30 H 0.045 0.955 31 H 0.104 0.896 32 H 0.025 0.975 33 H 0.069 0.931 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.233 0.767 37 H 0.111 0.889 38 H 0.110 0.890 39 H 0.102 0.898 40 H 0.103 0.897 41 H 0.150 0.850 42 H 0.153 0.847 43 H 0.231 0.769 44 H 0.235 0.765 45 H 0.143 0.857 46 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 0.232 5.020 23.132 23.671 hybrid contribution 0.369 0.393 -0.818 0.980 sum 0.601 5.413 22.313 22.968 Atomic orbital electron populations 1.21831 0.97745 0.99174 1.00096 1.18369 0.92819 0.92774 0.90647 1.21827 0.98557 0.98357 1.00089 1.21022 1.31374 1.12061 0.89873 0.92399 1.24893 0.94886 0.94946 0.98894 1.69815 1.36709 1.22796 1.23126 0.86515 0.78646 0.79748 0.82975 1.19760 1.21057 1.21071 1.21705 0.98102 0.95789 0.83518 1.46344 1.52500 1.31788 1.06122 1.20529 0.80815 0.84875 0.84962 1.90671 1.38801 1.26848 1.87059 1.21643 1.02711 1.00733 0.92526 1.20428 1.02035 0.99132 0.89196 1.20267 0.93897 0.94738 0.95812 1.21149 0.96125 1.00780 0.96145 1.21277 0.99042 0.92934 0.94138 1.19832 0.97291 1.00550 0.97725 1.18344 0.83695 0.79323 0.83493 1.43766 1.25600 1.38610 1.33670 1.90818 1.22493 1.65404 1.63323 1.21241 0.94582 0.98719 0.95651 1.21058 1.00563 0.96366 0.96266 0.97491 0.89590 0.95453 0.95466 0.89602 0.97493 0.93060 0.92771 0.92768 0.76686 0.88946 0.88988 0.89754 0.89713 0.84977 0.84654 0.76930 0.76471 0.85714 0.85104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.89 8.08 37.16 0.30 -2.59 16 2 C 0.05 1.24 0.50 -155.66 -0.08 1.16 16 3 C -0.13 -2.87 8.08 37.15 0.30 -2.57 16 4 C -0.50 -13.04 8.01 -34.44 -0.28 -13.32 16 5 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 6 C 0.06 1.69 5.15 -17.82 -0.09 1.60 16 7 N -0.89 -23.33 9.35 55.43 0.52 -22.81 16 8 Si 0.89 20.53 29.54 -169.99 -5.02 15.51 16 9 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 10 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 12 C 0.13 2.72 4.50 -4.05 -0.02 2.70 16 13 N -0.72 -12.04 4.96 -60.30 -0.30 -12.34 16 14 C 0.50 7.92 7.83 -10.99 -0.09 7.84 16 15 O -0.55 -10.81 15.98 5.56 0.09 -10.72 16 16 C -0.14 -1.46 5.68 -27.88 -0.16 -1.62 16 17 C -0.07 -0.71 4.63 -27.88 -0.13 -0.84 16 18 C -0.05 -0.41 5.14 -104.53 -0.54 -0.95 16 19 C -0.12 -1.09 9.68 -39.63 -0.38 -1.47 16 20 C -0.06 -0.52 9.60 -39.18 -0.38 -0.89 16 21 C -0.15 -1.33 5.87 -104.97 -0.62 -1.95 16 22 C 0.56 5.32 8.05 -12.33 -0.10 5.22 16 23 N -0.85 -4.32 8.83 30.53 0.27 -4.06 16 24 O -0.54 -7.28 17.18 5.32 0.09 -7.19 16 25 C -0.08 -0.57 9.54 -39.18 -0.37 -0.94 16 26 C -0.12 -0.95 9.68 -39.64 -0.38 -1.33 16 27 H 0.01 0.12 6.86 -51.93 -0.36 -0.24 16 28 H 0.09 2.11 6.07 -51.93 -0.32 1.80 16 29 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.09 2.10 6.07 -51.93 -0.32 1.79 16 32 H 0.01 0.12 6.86 -51.93 -0.36 -0.24 16 33 H 0.26 6.59 8.31 -40.82 -0.34 6.25 16 34 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.05 1.19 8.14 -51.93 -0.42 0.76 16 36 H 0.40 6.00 6.16 -40.82 -0.25 5.74 16 37 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.08 0.89 8.04 -51.93 -0.42 0.47 16 40 H 0.08 0.92 8.04 -51.94 -0.42 0.50 16 41 H 0.13 1.00 8.06 -52.49 -0.42 0.57 16 42 H 0.14 1.27 7.65 -52.49 -0.40 0.87 16 43 H 0.40 0.92 6.86 -40.82 -0.28 0.64 16 44 H 0.40 1.56 8.93 -40.82 -0.36 1.20 16 45 H 0.13 0.44 6.41 -52.49 -0.34 0.11 16 46 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 LS Contribution 376.15 15.07 5.67 5.67 Total: -1.00 -31.96 376.15 -8.43 -40.38 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: -6.74 Total: 5.52 kcal Atomic # 6 Polarization: -6.95 SS G_CDS: -3.01 Total: -9.96 kcal Atomic # 7 Polarization: -39.70 SS G_CDS: 0.49 Total: -39.21 kcal Atomic # 8 Polarization: -18.09 SS G_CDS: 0.18 Total: -17.91 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -31.96 -8.43 -40.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458045910.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.430 kcal (2) G-P(sol) polarization free energy of solvation -31.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds