Wall clock time and date at job start Tue Mar 31 2020 12:32:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52997 * 109.47256 * 2 1 4 4 C 1.50703 * 109.46980 * 239.99988 * 2 1 3 5 5 H 1.08001 * 119.99744 * 239.99711 * 4 2 1 6 6 C 1.37871 * 120.00125 * 60.00379 * 4 2 1 7 7 N 1.31519 * 120.00065 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00217 * 180.02562 * 6 4 2 9 9 H 1.48493 * 109.47021 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.47382 * 119.99657 * 8 6 4 11 11 H 1.48498 * 109.46899 * 239.99738 * 8 6 4 12 12 C 1.52998 * 109.47298 * 120.00080 * 2 1 3 13 13 N 1.46501 * 109.47406 * 299.99906 * 12 2 1 14 14 C 1.34776 * 120.00585 * 179.97438 * 13 12 2 15 15 O 1.21585 * 119.99660 * 354.69641 * 14 13 12 16 16 N 1.34772 * 120.00174 * 174.96835 * 14 13 12 17 17 C 1.47299 * 121.32664 * 184.63741 * 16 14 13 18 18 C 1.53084 * 107.97694 * 117.58260 * 17 16 14 19 19 C 1.50000 * 110.40417 * 45.73209 * 18 17 16 20 20 C 1.31553 * 124.32166 * 340.98597 * 19 18 17 21 21 C 1.47071 * 118.31118 * 180.83304 * 20 19 18 22 22 C 1.36224 * 125.96006 * 65.00361 * 21 20 19 23 23 C 1.40825 * 106.72646 * 180.02562 * 22 21 20 24 24 C 1.34799 * 107.06824 * 0.02562 * 23 22 21 25 25 O 1.34306 * 108.71497 * 359.73246 * 24 23 22 26 26 C 1.46992 * 121.32549 * 4.35435 * 16 14 13 27 27 H 1.09003 * 109.47368 * 300.00107 * 1 2 3 28 28 H 1.08999 * 109.47323 * 59.99885 * 1 2 3 29 29 H 1.09006 * 109.47207 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47529 * 180.02562 * 3 2 1 31 31 H 1.08999 * 109.47048 * 300.00283 * 3 2 1 32 32 H 1.09002 * 109.47457 * 59.99983 * 3 2 1 33 33 H 0.96993 * 120.00436 * 180.02562 * 7 6 4 34 34 H 1.09001 * 109.47548 * 180.02562 * 12 2 1 35 35 H 1.08998 * 109.47363 * 60.00059 * 12 2 1 36 36 H 0.97010 * 119.99632 * 359.97438 * 13 12 2 37 37 H 1.08999 * 109.76115 * 237.20178 * 17 16 14 38 38 H 1.09003 * 109.76035 * 357.96736 * 17 16 14 39 39 H 1.08993 * 109.31754 * 166.01803 * 18 17 16 40 40 H 1.09001 * 109.31413 * 285.44902 * 18 17 16 41 41 H 1.08001 * 117.83877 * 161.01523 * 19 18 17 42 42 H 1.08000 * 126.63543 * 359.97438 * 22 21 20 43 43 H 1.08005 * 126.46814 * 179.97438 * 23 22 21 44 44 H 1.07992 * 125.64238 * 180.02562 * 24 23 22 45 45 H 1.09002 * 109.52119 * 343.24591 * 26 16 14 46 46 H 1.09002 * 109.52599 * 103.44843 * 26 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0322 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9428 0.8297 -2.6034 8 14 2.3212 -1.1204 -4.0080 9 1 3.1462 -2.2870 -3.6038 10 1 1.1660 -1.5867 -4.8161 11 1 3.1465 -0.1874 -4.8165 12 6 2.0400 -0.7212 1.2492 13 7 1.5517 -0.0307 2.4454 14 6 1.8769 -0.4914 3.6696 15 8 2.4936 -1.5330 3.7829 16 7 1.5136 0.1997 4.7681 17 6 1.9392 -0.2221 6.1137 18 6 2.8048 0.8926 6.7066 19 6 2.1610 2.2290 6.4840 20 6 1.2300 2.4633 5.5845 21 6 0.7024 3.8310 5.4667 22 6 1.4055 4.9283 5.0699 23 6 0.5120 6.0163 5.1040 24 6 -0.6790 5.5375 5.5155 25 8 -0.5621 4.2165 5.7284 26 6 0.6820 1.4078 4.6707 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 3.1299 1.4425 -0.0005 31 1 1.6766 1.9563 -0.8899 32 1 1.6767 1.9564 0.8900 33 1 0.7081 1.1609 -3.4843 34 1 3.1300 -0.7209 1.2495 35 1 1.6767 -1.7489 1.2492 36 1 0.9943 0.7583 2.3564 37 1 1.0642 -0.3836 6.7433 38 1 2.5196 -1.1423 6.0451 39 1 2.9260 0.7246 7.7766 40 1 3.7847 0.8806 6.2294 41 1 2.4833 3.0535 7.1028 42 1 2.4468 4.9581 4.7852 43 1 0.7385 7.0412 4.8494 44 1 -1.5795 6.1189 5.6471 45 1 0.6917 1.7748 3.6443 46 1 -0.3406 1.1709 4.9643 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459235998.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:58 Heat of formation + Delta-G solvation = -10.058048 kcal Electronic energy + Delta-G solvation = -27106.567645 eV Core-core repulsion = 23383.785864 eV Total energy + Delta-G solvation = -3722.781781 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.39882 -41.47467 -39.01853 -37.97639 -35.16693 -34.57758 -33.70749 -33.12867 -32.18231 -29.30587 -27.63978 -27.59056 -27.21290 -26.09252 -24.60457 -22.72108 -22.30153 -21.25020 -20.64263 -19.87763 -18.69628 -18.28512 -17.80219 -17.30188 -16.82921 -16.67057 -16.56343 -16.04731 -15.56150 -15.31545 -15.25592 -14.76075 -14.70163 -14.43576 -14.13491 -14.02556 -13.78209 -13.53373 -13.48016 -13.23846 -13.12111 -12.97414 -12.72605 -12.67496 -12.56030 -12.27043 -12.13523 -11.93492 -11.50445 -11.38677 -11.13821 -10.87831 -10.71147 -10.41037 -10.31499 -10.08630 -9.54930 -9.22294 -8.01974 -6.17786 0.48007 1.02083 1.42264 1.46058 1.55035 1.60474 1.72558 2.11660 2.21196 2.46396 2.98057 3.21744 3.61311 3.68091 4.00852 4.12318 4.14499 4.19318 4.30343 4.39921 4.41242 4.44635 4.52578 4.68011 4.69794 4.84742 4.93180 4.95348 4.99031 5.02265 5.02770 5.08749 5.15165 5.17846 5.34430 5.36687 5.44908 5.59031 5.60364 5.61832 5.65023 5.67473 5.93668 6.12368 6.17701 6.20210 6.42991 6.86334 6.94851 7.49989 7.54020 8.97472 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.013982 B = 0.003480 C = 0.002939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2002.132665 B = 8044.622319 C = 9524.616540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.051 3.949 3 C -0.117 4.117 4 C -0.527 4.527 5 H 0.046 0.954 6 C 0.029 3.971 7 N -0.900 5.900 8 Si 0.947 3.053 9 H -0.275 1.275 10 H -0.281 1.281 11 H -0.281 1.281 12 C 0.167 3.833 13 N -0.729 5.729 14 C 0.704 3.296 15 O -0.633 6.633 16 N -0.629 5.629 17 C 0.120 3.880 18 C -0.101 4.101 19 C -0.087 4.087 20 C -0.094 4.094 21 C 0.004 3.996 22 C -0.202 4.202 23 C -0.226 4.226 24 C -0.037 4.037 25 O -0.185 6.185 26 C 0.156 3.844 27 H 0.030 0.970 28 H 0.063 0.937 29 H 0.019 0.981 30 H 0.019 0.981 31 H 0.063 0.937 32 H 0.029 0.971 33 H 0.260 0.740 34 H 0.037 0.963 35 H 0.037 0.963 36 H 0.401 0.599 37 H 0.091 0.909 38 H 0.085 0.915 39 H 0.125 0.875 40 H 0.079 0.921 41 H 0.129 0.871 42 H 0.151 0.849 43 H 0.168 0.832 44 H 0.238 0.762 45 H 0.080 0.920 46 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.436 10.387 20.695 23.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.050 3.950 3 C -0.175 4.175 4 C -0.565 4.565 5 H 0.064 0.936 6 C -0.171 4.171 7 N -0.539 5.539 8 Si 0.773 3.227 9 H -0.199 1.199 10 H -0.207 1.207 11 H -0.207 1.207 12 C 0.043 3.957 13 N -0.385 5.385 14 C 0.406 3.594 15 O -0.514 6.514 16 N -0.366 5.366 17 C -0.002 4.002 18 C -0.138 4.138 19 C -0.106 4.106 20 C -0.095 4.095 21 C -0.046 4.046 22 C -0.222 4.222 23 C -0.245 4.245 24 C -0.104 4.104 25 O -0.081 6.081 26 C 0.033 3.967 27 H 0.049 0.951 28 H 0.082 0.918 29 H 0.038 0.962 30 H 0.038 0.962 31 H 0.082 0.918 32 H 0.048 0.952 33 H 0.070 0.930 34 H 0.055 0.945 35 H 0.056 0.944 36 H 0.239 0.761 37 H 0.109 0.891 38 H 0.103 0.897 39 H 0.143 0.857 40 H 0.098 0.902 41 H 0.147 0.853 42 H 0.169 0.831 43 H 0.186 0.814 44 H 0.255 0.745 45 H 0.098 0.902 46 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -2.281 9.539 20.693 22.900 hybrid contribution 0.204 0.161 -1.413 1.437 sum -2.077 9.700 19.280 21.683 Atomic orbital electron populations 1.21648 0.97209 0.98663 1.00079 1.18368 0.93204 0.93002 0.90379 1.21635 0.97938 0.97873 1.00007 1.21277 1.31695 1.12161 0.91405 0.93575 1.25457 0.95099 0.95576 1.00985 1.69917 1.37020 1.23368 1.23559 0.85680 0.78121 0.78730 0.80121 1.19938 1.20712 1.20702 1.21155 0.96677 0.94784 0.83103 1.45424 1.55868 1.33102 1.04156 1.15977 0.79499 0.82928 0.81031 1.90842 1.48994 1.25435 1.86172 1.47306 1.55406 1.27935 1.05940 1.21758 0.99726 0.98318 0.80416 1.20903 0.98656 0.90571 1.03714 1.22702 0.94144 0.99208 0.94497 1.18704 1.00977 0.88996 1.00779 1.20693 0.82674 0.94502 1.06772 1.22118 1.01765 0.92106 1.06164 1.22087 0.93596 1.01328 1.07489 1.24894 1.01785 0.80415 1.03322 1.84148 1.29969 1.25939 1.68059 1.20229 0.94440 0.82749 0.99241 0.95112 0.91772 0.96178 0.96202 0.91799 0.95236 0.93025 0.94495 0.94446 0.76068 0.89075 0.89670 0.85737 0.90233 0.85287 0.83086 0.81420 0.74541 0.90157 0.89073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.42 8.08 71.98 0.58 -4.84 16 2 C 0.05 2.44 0.50 -52.93 -0.03 2.41 16 3 C -0.12 -5.35 8.08 71.98 0.58 -4.77 16 4 C -0.53 -28.27 8.01 25.60 0.21 -28.07 16 5 H 0.05 2.53 7.74 -2.91 -0.02 2.50 16 6 C 0.03 1.51 5.15 84.65 0.44 1.95 16 7 N -0.90 -48.39 9.35 21.45 0.20 -48.19 16 8 Si 0.95 42.93 29.54 68.60 2.03 44.95 16 9 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 10 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 11 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 12 C 0.17 7.45 4.51 86.38 0.39 7.84 16 13 N -0.73 -27.40 4.87 -478.54 -2.33 -29.73 16 14 C 0.70 26.04 8.32 179.06 1.49 27.53 16 15 O -0.63 -28.05 15.84 -3.98 -0.06 -28.11 16 16 N -0.63 -17.37 2.97 -842.02 -2.50 -19.87 16 17 C 0.12 2.55 6.49 86.25 0.56 3.11 16 18 C -0.10 -1.59 6.28 29.66 0.19 -1.40 16 19 C -0.09 -1.50 9.49 24.90 0.24 -1.27 16 20 C -0.09 -1.97 5.76 -18.33 -0.11 -2.08 16 21 C 0.00 0.08 6.42 24.12 0.15 0.23 16 22 C -0.20 -4.21 10.84 22.43 0.24 -3.97 16 23 C -0.23 -3.92 10.88 22.11 0.24 -3.68 16 24 C -0.04 -0.59 12.08 67.03 0.81 0.22 16 25 O -0.18 -3.95 10.68 -7.06 -0.08 -4.03 16 26 C 0.16 3.70 6.23 85.32 0.53 4.23 16 27 H 0.03 1.20 6.86 -2.39 -0.02 1.19 16 28 H 0.06 3.24 6.07 -2.39 -0.01 3.23 16 29 H 0.02 0.90 8.14 -2.38 -0.02 0.88 16 30 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.06 3.23 6.07 -2.39 -0.01 3.21 16 32 H 0.03 1.16 6.86 -2.39 -0.02 1.14 16 33 H 0.26 13.42 8.31 -92.71 -0.77 12.65 16 34 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 35 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 36 H 0.40 13.67 3.78 -92.70 -0.35 13.32 16 37 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.08 2.11 7.07 -2.39 -0.02 2.09 16 39 H 0.12 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 41 H 0.13 1.83 7.94 -2.91 -0.02 1.81 16 42 H 0.15 2.93 8.06 -2.91 -0.02 2.90 16 43 H 0.17 2.12 8.06 -2.91 -0.02 2.09 16 44 H 0.24 1.68 8.06 -2.91 -0.02 1.66 16 45 H 0.08 2.05 5.87 -2.39 -0.01 2.03 16 46 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 Total: -1.00 -66.28 367.55 4.41 -61.87 By element: Atomic # 1 Polarization: 25.02 SS G_CDS: 0.64 Total: 25.66 kcal Atomic # 6 Polarization: -9.07 SS G_CDS: 6.51 Total: -2.56 kcal Atomic # 7 Polarization: -93.16 SS G_CDS: -4.62 Total: -97.79 kcal Atomic # 8 Polarization: -32.00 SS G_CDS: -0.14 Total: -32.14 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.95 kcal Total: -66.28 4.41 -61.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459235998.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.811 kcal (2) G-P(sol) polarization free energy of solvation -66.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds