Wall clock time and date at job start Tue Mar 31 2020 12:33:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30992 * 1 3 3 C 1.50701 * 120.00387 * 2 1 4 4 O 1.42894 * 109.47413 * 134.72810 * 3 2 1 5 5 C 1.35898 * 117.00292 * 180.02562 * 4 3 2 6 6 C 1.38808 * 120.01873 * 359.72694 * 5 4 3 7 7 C 1.38166 * 120.08232 * 179.70228 * 6 5 4 8 8 C 1.38166 * 120.12371 * 0.59229 * 7 6 5 9 9 C 1.38884 * 120.04188 * 359.68295 * 8 7 6 10 10 N 1.39935 * 120.04349 * 180.02562 * 9 8 7 11 11 C 1.34776 * 120.00000 * 213.27575 * 10 9 8 12 12 O 1.21591 * 119.99687 * 5.31194 * 11 10 9 13 13 N 1.34774 * 120.00191 * 185.31535 * 11 10 9 14 14 C 1.46502 * 119.99988 * 179.97438 * 13 11 10 15 15 C 1.53001 * 109.47060 * 179.97438 * 14 13 11 16 16 C 1.53003 * 109.47167 * 300.00537 * 15 14 13 17 17 C 1.53004 * 109.47137 * 60.00265 * 15 14 13 18 18 C 1.50698 * 109.47449 * 180.02562 * 15 14 13 19 19 H 1.08007 * 119.99512 * 0.02562 * 18 15 14 20 20 C 1.37875 * 120.00305 * 179.97438 * 18 15 14 21 21 N 1.31519 * 119.99926 * 0.02562 * 20 18 15 22 22 Si 1.86803 * 120.00181 * 180.02562 * 20 18 15 23 23 H 1.48496 * 109.47051 * 89.99967 * 22 20 18 24 24 H 1.48488 * 109.47318 * 210.00502 * 22 20 18 25 25 H 1.48505 * 109.46793 * 330.00589 * 22 20 18 26 26 C 1.38587 * 120.02090 * 179.97438 * 5 4 3 27 27 H 1.08003 * 120.00400 * 180.27839 * 1 2 3 28 28 H 1.08006 * 119.99782 * 0.27119 * 1 2 3 29 29 H 1.08006 * 119.99782 * 179.72881 * 2 1 3 30 30 H 1.09001 * 109.46965 * 254.73122 * 3 2 1 31 31 H 1.08998 * 109.46951 * 14.72567 * 3 2 1 32 32 H 1.08000 * 119.95803 * 359.96945 * 6 5 4 33 33 H 1.08002 * 119.93829 * 180.27691 * 7 6 5 34 34 H 1.08003 * 119.98308 * 179.70538 * 8 7 6 35 35 H 0.97005 * 120.00164 * 33.27336 * 10 9 8 36 36 H 0.97000 * 119.99994 * 0.02562 * 13 11 10 37 37 H 1.08995 * 109.47649 * 299.99838 * 14 13 11 38 38 H 1.08998 * 109.46943 * 60.00185 * 14 13 11 39 39 H 1.08998 * 109.47360 * 60.00082 * 16 15 14 40 40 H 1.09003 * 109.46942 * 179.97438 * 16 15 14 41 41 H 1.08998 * 109.47034 * 299.99773 * 16 15 14 42 42 H 1.09000 * 109.47130 * 59.99575 * 17 15 14 43 43 H 1.08998 * 109.47426 * 180.02562 * 17 15 14 44 44 H 1.09008 * 109.47101 * 299.99898 * 17 15 14 45 45 H 0.96994 * 119.99282 * 179.97438 * 21 20 18 46 46 H 1.07995 * 120.05973 * 359.97438 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1228 1.2435 0.9571 5 6 3.9047 2.3478 1.0840 6 6 3.6602 3.4658 0.2985 7 6 4.4504 4.5914 0.4307 8 6 5.4939 4.6035 1.3363 9 6 5.7467 3.4857 2.1208 10 7 6.8032 3.4982 3.0384 11 6 7.4852 2.3647 3.2962 12 8 7.2473 1.3546 2.6625 13 7 8.4308 2.3507 4.2565 14 6 9.1717 1.1184 4.5371 15 6 10.1775 1.3730 5.6617 16 6 11.1548 2.4695 5.2333 17 6 9.4320 1.8180 6.9216 18 6 10.9401 0.1056 5.9500 19 1 10.7288 -0.7917 5.3871 20 6 11.9082 0.0917 6.9316 21 7 12.1658 1.1844 7.6167 22 14 12.8540 -1.4792 7.2884 23 1 14.0694 -1.5296 6.4367 24 1 13.2508 -1.5039 8.7191 25 1 11.9936 -2.6530 6.9930 26 6 4.9498 2.3565 1.9941 27 1 -0.5401 -0.9353 0.0045 28 1 -0.5400 0.9354 -0.0044 29 1 1.8499 -0.9354 0.0044 30 1 2.4796 1.4843 -0.9914 31 1 1.3845 2.1167 0.2612 32 1 2.8485 3.4573 -0.4139 33 1 4.2553 5.4615 -0.1785 34 1 6.1132 5.4829 1.4344 35 1 7.0447 4.3226 3.4888 36 1 8.6202 3.1564 4.7623 37 1 8.4754 0.3372 4.8419 38 1 9.7031 0.8017 3.6397 39 1 10.6035 3.3863 5.0246 40 1 11.8710 2.6511 6.0347 41 1 11.6858 2.1525 4.3358 42 1 8.7357 1.0369 7.2267 43 1 10.1485 1.9997 7.7226 44 1 8.8807 2.7349 6.7128 45 1 12.8466 1.1744 8.3074 46 1 5.1437 1.4863 2.6035 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459263075.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:33:18 Heat of formation + Delta-G solvation = -19.946400 kcal Electronic energy + Delta-G solvation = -25867.761957 eV Core-core repulsion = 22144.551385 eV Total energy + Delta-G solvation = -3723.210572 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.64621 -39.65525 -37.76688 -36.40985 -34.61532 -34.08130 -33.33378 -31.00144 -30.34211 -29.10241 -26.79553 -25.73941 -25.62196 -24.89057 -23.02551 -22.10076 -20.74377 -20.16197 -18.90419 -18.58135 -18.13669 -16.58606 -16.18412 -16.10843 -15.87997 -15.73503 -15.17341 -14.79352 -14.60581 -14.29447 -13.84651 -13.64576 -13.50297 -13.10826 -12.94340 -12.89539 -12.63598 -12.20394 -11.93464 -11.65258 -11.59059 -11.39203 -11.21498 -11.08192 -10.88161 -10.69492 -10.42087 -10.22321 -10.18582 -9.87518 -9.80615 -9.64717 -9.34223 -8.80723 -8.55040 -8.39273 -8.32479 -7.98536 -6.02892 -4.12757 1.27267 1.40815 1.70616 2.81035 3.24525 3.28566 3.35578 3.38919 3.40144 3.85579 4.37190 4.46101 4.59572 4.66944 4.75930 4.90223 5.00523 5.06994 5.13034 5.24079 5.28123 5.47659 5.50035 5.79556 6.12233 6.15422 6.18003 6.22750 6.24826 6.32845 6.36630 6.40986 6.49267 6.75320 6.80630 6.86604 6.91012 7.00497 7.01148 7.20310 7.35491 7.37167 7.54412 7.69173 7.99783 8.10187 8.28685 8.38607 8.83574 8.89479 9.53071 10.98593 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.019426 B = 0.002370 C = 0.002167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.022481 B =11809.202513 C =12915.447086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.154 4.154 3 C 0.087 3.913 4 O -0.309 6.309 5 C 0.148 3.852 6 C -0.235 4.235 7 C -0.061 4.061 8 C -0.190 4.190 9 C 0.218 3.782 10 N -0.692 5.692 11 C 0.694 3.306 12 O -0.576 6.576 13 N -0.725 5.725 14 C 0.148 3.852 15 C 0.056 3.944 16 C -0.130 4.130 17 C -0.130 4.130 18 C -0.505 4.505 19 H 0.058 0.942 20 C 0.066 3.934 21 N -0.886 5.886 22 Si 0.894 3.106 23 H -0.281 1.281 24 H -0.287 1.287 25 H -0.274 1.274 26 C -0.155 4.155 27 H 0.107 0.893 28 H 0.099 0.901 29 H 0.121 0.879 30 H 0.072 0.928 31 H 0.067 0.933 32 H 0.124 0.876 33 H 0.126 0.874 34 H 0.126 0.874 35 H 0.407 0.593 36 H 0.396 0.604 37 H 0.055 0.945 38 H 0.055 0.945 39 H 0.005 0.995 40 H 0.086 0.914 41 H 0.027 0.973 42 H 0.027 0.973 43 H 0.085 0.915 44 H 0.005 0.995 45 H 0.260 0.740 46 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.653 8.171 -12.715 24.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.172 4.172 3 C 0.012 3.988 4 O -0.222 6.222 5 C 0.102 3.898 6 C -0.255 4.255 7 C -0.080 4.080 8 C -0.211 4.211 9 C 0.121 3.879 10 N -0.339 5.339 11 C 0.395 3.605 12 O -0.453 6.453 13 N -0.379 5.379 14 C 0.026 3.974 15 C 0.055 3.945 16 C -0.188 4.188 17 C -0.188 4.188 18 C -0.543 4.543 19 H 0.076 0.924 20 C -0.136 4.136 21 N -0.525 5.525 22 Si 0.722 3.278 23 H -0.207 1.207 24 H -0.213 1.213 25 H -0.199 1.199 26 C -0.177 4.177 27 H 0.125 0.875 28 H 0.117 0.883 29 H 0.139 0.861 30 H 0.090 0.910 31 H 0.085 0.915 32 H 0.142 0.858 33 H 0.144 0.856 34 H 0.144 0.856 35 H 0.242 0.758 36 H 0.231 0.769 37 H 0.074 0.926 38 H 0.073 0.927 39 H 0.024 0.976 40 H 0.104 0.896 41 H 0.046 0.954 42 H 0.046 0.954 43 H 0.104 0.896 44 H 0.024 0.976 45 H 0.070 0.930 46 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -18.634 7.046 -12.944 23.758 hybrid contribution 0.724 0.116 0.476 0.874 sum -17.910 7.162 -12.468 22.968 Atomic orbital electron populations 1.23864 0.95389 1.02497 0.99407 1.22718 0.95677 0.98008 1.00749 1.21804 0.88027 0.96690 0.92256 1.86117 1.42237 1.35792 1.58067 1.18709 0.90740 0.85690 0.94635 1.21118 1.04899 0.94674 1.04766 1.20615 0.93644 0.97175 0.96520 1.20761 1.01945 0.99080 0.99355 1.17131 0.86706 0.94145 0.89870 1.42766 1.33793 1.12265 1.45093 1.16092 0.79912 0.83109 0.81417 1.90934 1.69594 1.32380 1.52423 1.45559 1.38974 1.16261 1.37146 1.21674 0.93354 0.83069 0.99326 1.18379 0.90821 0.95608 0.89706 1.21830 1.00494 0.95364 1.01117 1.21828 0.99093 0.96166 1.01721 1.20969 1.19005 0.95514 1.18843 0.92371 1.24883 0.96721 0.96257 0.95707 1.69804 1.32685 1.26735 1.23248 0.86558 0.80197 0.83702 0.77345 1.20718 1.21284 1.19881 1.20381 0.94392 1.00593 1.02310 0.87457 0.88306 0.86118 0.91025 0.91524 0.85789 0.85585 0.85636 0.75754 0.76943 0.92629 0.92672 0.97584 0.89583 0.95400 0.95372 0.89593 0.97562 0.93011 0.83613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.13 14.31 29.02 0.42 -0.72 16 2 C -0.15 -1.28 9.89 -36.02 -0.36 -1.63 16 3 C 0.09 0.80 5.15 36.01 0.19 0.98 16 4 O -0.31 -4.12 10.12 -19.42 -0.20 -4.31 16 5 C 0.15 2.02 6.68 -39.24 -0.26 1.76 16 6 C -0.23 -2.54 9.04 -39.40 -0.36 -2.90 16 7 C -0.06 -0.60 10.03 -39.63 -0.40 -1.00 16 8 C -0.19 -2.11 9.96 -39.37 -0.39 -2.50 16 9 C 0.22 3.04 6.28 -83.71 -0.53 2.52 16 10 N -0.69 -9.47 5.35 -14.24 -0.08 -9.55 16 11 C 0.69 12.35 8.30 -86.92 -0.72 11.63 16 12 O -0.58 -12.44 14.03 5.29 0.07 -12.37 16 13 N -0.73 -12.77 4.96 -65.23 -0.32 -13.09 16 14 C 0.15 3.14 4.50 -4.04 -0.02 3.12 16 15 C 0.06 1.28 0.50 -155.66 -0.08 1.20 16 16 C -0.13 -2.89 8.08 37.16 0.30 -2.59 16 17 C -0.13 -2.90 8.08 37.16 0.30 -2.60 16 18 C -0.50 -13.14 8.01 -34.44 -0.28 -13.41 16 19 H 0.06 1.53 7.74 -52.48 -0.41 1.13 16 20 C 0.07 1.72 5.15 -17.82 -0.09 1.62 16 21 N -0.89 -23.44 9.36 55.43 0.52 -22.92 16 22 Si 0.89 20.70 29.54 -169.99 -5.02 15.68 16 23 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 24 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 25 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 26 C -0.16 -2.44 8.59 -39.25 -0.34 -2.77 16 27 H 0.11 0.56 8.06 -52.48 -0.42 0.14 16 28 H 0.10 0.53 7.90 -52.48 -0.41 0.11 16 29 H 0.12 1.02 8.06 -52.48 -0.42 0.60 16 30 H 0.07 0.57 7.65 -51.93 -0.40 0.17 16 31 H 0.07 0.50 7.39 -51.93 -0.38 0.12 16 32 H 0.12 1.02 6.29 -52.49 -0.33 0.69 16 33 H 0.13 0.88 8.06 -52.49 -0.42 0.45 16 34 H 0.13 1.09 8.06 -52.48 -0.42 0.67 16 35 H 0.41 4.13 8.83 -40.82 -0.36 3.77 16 36 H 0.40 6.13 6.18 -40.82 -0.25 5.87 16 37 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 38 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 39 H 0.01 0.10 6.86 -51.93 -0.36 -0.26 16 40 H 0.09 2.12 6.07 -51.93 -0.32 1.80 16 41 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.09 2.12 6.07 -51.93 -0.32 1.80 16 44 H 0.01 0.11 6.86 -51.92 -0.36 -0.25 16 45 H 0.26 6.65 8.31 -40.82 -0.34 6.31 16 46 H 0.15 2.67 6.41 -52.49 -0.34 2.33 16 LS Contribution 374.60 15.07 5.65 5.65 Total: -1.00 -30.29 374.60 -8.73 -39.02 By element: Atomic # 1 Polarization: 15.94 SS G_CDS: -6.74 Total: 9.20 kcal Atomic # 6 Polarization: -4.69 SS G_CDS: -2.61 Total: -7.30 kcal Atomic # 7 Polarization: -45.68 SS G_CDS: 0.12 Total: -45.56 kcal Atomic # 8 Polarization: -16.56 SS G_CDS: -0.12 Total: -16.68 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -30.29 -8.73 -39.02 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459263075.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.076 kcal (2) G-P(sol) polarization free energy of solvation -30.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds