Wall clock time and date at job start Tue Mar 31 2020 12:00:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.46977 * 2 1 4 4 C 1.53000 * 109.46962 * 240.00264 * 2 1 3 5 5 C 1.52997 * 109.47320 * 59.99953 * 4 2 1 6 6 N 1.46898 * 109.46901 * 179.97438 * 5 4 2 7 7 N 1.46500 * 109.47270 * 120.00085 * 2 1 3 8 8 C 1.34776 * 119.99784 * 299.99985 * 7 2 1 9 9 O 1.21722 * 120.00532 * 0.02562 * 8 7 2 10 10 C 1.46261 * 119.99815 * 180.27468 * 8 7 2 11 11 C 1.35019 * 120.00171 * 179.72881 * 10 8 7 12 12 C 1.46959 * 120.00209 * 180.02562 * 11 10 8 13 13 C 1.40017 * 120.10027 * 359.71653 * 12 11 10 14 14 C 1.37600 * 119.89871 * 179.76963 * 13 12 11 15 15 C 1.39173 * 120.09945 * 0.50997 * 14 13 12 16 16 O 1.35570 * 119.89967 * 179.76472 * 15 14 13 17 17 C 1.34788 * 117.00091 * 174.42353 * 16 15 14 18 18 H 1.07991 * 119.99907 * 5.05912 * 17 16 15 19 19 C 1.38714 * 119.99689 * 185.05654 * 17 16 15 20 20 N 1.31507 * 120.00463 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 119.99779 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47231 * 89.99856 * 21 19 17 23 23 H 1.48503 * 109.46780 * 210.00144 * 21 19 17 24 24 H 1.48504 * 109.46893 * 329.99641 * 21 19 17 25 25 C 1.39180 * 120.20294 * 359.74773 * 15 14 13 26 26 C 1.37600 * 120.10236 * 359.97438 * 25 15 14 27 27 H 1.08994 * 109.47179 * 299.99565 * 1 2 3 28 28 H 1.08994 * 109.47523 * 60.00246 * 1 2 3 29 29 H 1.09009 * 109.46895 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46924 * 180.02562 * 3 2 1 31 31 H 1.08994 * 109.46793 * 300.00201 * 3 2 1 32 32 H 1.09008 * 109.46843 * 60.00170 * 3 2 1 33 33 H 1.09007 * 109.46873 * 179.97438 * 4 2 1 34 34 H 1.09001 * 109.47035 * 299.99199 * 4 2 1 35 35 H 1.08999 * 109.47139 * 300.00004 * 5 4 2 36 36 H 1.08995 * 109.47040 * 59.99831 * 5 4 2 37 37 H 1.00905 * 111.00245 * 56.04952 * 6 5 4 38 38 H 1.00905 * 110.99526 * 179.97438 * 6 5 4 39 39 H 0.96999 * 120.00112 * 119.99958 * 7 2 1 40 40 H 1.08000 * 119.99981 * 359.72341 * 10 8 7 41 41 H 1.08000 * 119.99847 * 359.97438 * 11 10 8 42 42 H 1.08005 * 120.04922 * 0.02969 * 13 12 11 43 43 H 1.08005 * 119.95289 * 180.23375 * 14 13 12 44 44 H 0.96998 * 120.00154 * 179.97438 * 20 19 17 45 45 H 1.08007 * 119.94868 * 179.97438 * 25 15 14 46 46 H 1.07997 * 120.05056 * 180.02562 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5300 0.0001 -2.4985 6 7 2.0201 -0.6921 -3.6979 7 7 2.0184 -0.6906 1.1961 8 6 1.6928 -0.2301 2.4202 9 8 0.9926 0.7592 2.5320 10 6 2.1853 -0.9161 3.6144 11 6 1.8637 -0.4517 4.8408 12 6 2.3590 -1.1406 6.0407 13 6 3.1597 -2.2823 5.9147 14 6 3.6252 -2.9213 7.0409 15 6 3.2924 -2.4406 8.3039 16 8 3.7493 -3.0762 9.4108 17 6 3.4895 -2.4972 10.5999 18 1 2.8708 -1.6133 10.6464 19 6 4.0168 -3.0368 11.7639 20 7 4.7697 -4.1135 11.7074 21 14 3.6561 -2.2349 13.4121 22 1 2.4233 -2.8265 13.9912 23 1 4.7966 -2.4655 14.3348 24 1 3.4619 -0.7751 13.2203 25 6 2.4923 -1.3093 8.4340 26 6 2.0270 -0.6604 7.3134 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0278 0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9563 -0.8899 32 1 1.6766 1.9564 0.8901 33 1 3.1300 -0.7208 -1.2495 34 1 1.6767 -1.7489 -1.2492 35 1 0.4400 0.0001 -2.4985 36 1 1.8933 1.0277 -2.4984 37 1 1.7510 -1.6646 -3.6896 38 1 1.6962 -0.2347 -4.5370 39 1 2.5760 -1.4793 1.1071 40 1 2.8062 -1.7942 3.5153 41 1 1.2430 0.4266 4.9399 42 1 3.4151 -2.6583 4.9349 43 1 4.2460 -3.7998 6.9447 44 1 5.1388 -4.4906 12.5213 45 1 2.2363 -0.9401 9.4162 46 1 1.4066 0.2176 7.4154 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493734549.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:00:04 Heat of formation + Delta-G solvation = -33.029597 kcal Electronic energy + Delta-G solvation = -25103.541137 eV Core-core repulsion = 21379.763235 eV Total energy + Delta-G solvation = -3723.777902 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.18880 -39.17717 -37.58086 -36.80500 -34.60371 -33.22784 -32.37485 -31.70646 -30.42681 -28.28226 -27.90641 -27.47811 -25.70496 -24.26499 -22.81393 -22.12985 -20.78585 -19.55374 -19.25628 -18.18259 -17.21364 -17.07890 -16.28185 -16.17118 -15.30152 -14.95445 -14.82883 -14.79151 -14.47305 -14.35677 -13.93142 -13.81476 -13.59258 -13.47095 -13.18260 -13.03321 -12.59580 -12.46269 -12.08375 -11.94078 -11.86999 -11.74258 -11.69929 -11.53235 -11.23436 -11.16113 -11.11821 -11.02883 -10.67083 -10.53711 -9.58892 -9.51770 -9.48994 -9.14656 -9.10187 -8.84744 -8.38171 -7.11061 -6.65073 -4.20091 1.08655 2.13514 2.57136 3.03825 3.04856 3.09630 3.16390 3.60417 3.82278 4.04069 4.50457 4.52309 4.65322 4.69327 4.92313 4.92773 5.01121 5.04431 5.06451 5.21231 5.28111 5.49108 5.50335 5.53758 5.60996 5.61569 5.67102 5.67313 5.76781 5.79794 6.01393 6.11414 6.15900 6.21823 6.45053 6.49734 6.54284 6.61652 6.65186 6.79484 6.92185 6.93479 7.13247 7.23946 7.28539 7.62083 7.64142 7.80237 8.39963 8.79726 9.46699 10.51554 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.041019 B = 0.001805 C = 0.001751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.453997 B =15508.420328 C =15983.970520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.177 3.823 3 C -0.165 4.165 4 C -0.120 4.120 5 C 0.061 3.939 6 N -0.853 5.853 7 N -0.727 5.727 8 C 0.559 3.441 9 O -0.554 6.554 10 C -0.283 4.283 11 C 0.037 3.963 12 C -0.198 4.198 13 C -0.043 4.043 14 C -0.200 4.200 15 C 0.167 3.833 16 O -0.163 6.163 17 C -0.393 4.393 18 H 0.097 0.903 19 C 0.042 3.958 20 N -0.852 5.852 21 Si 0.945 3.055 22 H -0.271 1.271 23 H -0.275 1.275 24 H -0.265 1.265 25 C -0.242 4.242 26 C -0.035 4.035 27 H 0.081 0.919 28 H 0.060 0.940 29 H 0.052 0.948 30 H 0.054 0.946 31 H 0.060 0.940 32 H 0.080 0.920 33 H 0.077 0.923 34 H 0.066 0.934 35 H 0.033 0.967 36 H 0.078 0.922 37 H 0.340 0.660 38 H 0.342 0.658 39 H 0.398 0.602 40 H 0.122 0.878 41 H 0.123 0.877 42 H 0.118 0.882 43 H 0.121 0.879 44 H 0.274 0.726 45 H 0.131 0.869 46 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.844 5.918 -22.777 24.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.090 3.910 3 C -0.223 4.223 4 C -0.158 4.158 5 C -0.070 4.070 6 N -0.383 5.383 7 N -0.378 5.378 8 C 0.351 3.649 9 O -0.435 6.435 10 C -0.304 4.304 11 C 0.017 3.983 12 C -0.199 4.199 13 C -0.061 4.061 14 C -0.219 4.219 15 C 0.110 3.890 16 O -0.064 6.064 17 C -0.469 4.469 18 H 0.115 0.885 19 C -0.164 4.164 20 N -0.485 5.485 21 Si 0.769 3.231 22 H -0.196 1.196 23 H -0.200 1.200 24 H -0.190 1.190 25 C -0.261 4.261 26 C -0.054 4.054 27 H 0.099 0.901 28 H 0.079 0.921 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.099 0.901 33 H 0.096 0.904 34 H 0.085 0.915 35 H 0.051 0.949 36 H 0.096 0.904 37 H 0.152 0.848 38 H 0.155 0.845 39 H 0.232 0.768 40 H 0.140 0.860 41 H 0.140 0.860 42 H 0.136 0.864 43 H 0.139 0.861 44 H 0.084 0.916 45 H 0.149 0.851 46 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -5.334 6.424 -22.204 23.722 hybrid contribution -0.864 -0.288 0.554 1.066 sum -6.199 6.136 -21.650 23.341 Atomic orbital electron populations 1.22291 0.94525 1.02070 1.03464 1.20173 0.94184 0.92608 0.83996 1.22279 1.01031 0.95583 1.03388 1.21792 1.02043 0.99236 0.92765 1.21889 0.97079 0.98612 0.89432 1.58710 1.68092 1.06948 1.04501 1.45991 1.54476 1.32165 1.05218 1.18345 0.79411 0.83668 0.83444 1.90704 1.38978 1.26785 1.87050 1.22473 1.10734 1.05208 0.92019 1.22270 0.90203 0.94633 0.91145 1.18469 1.08646 1.00622 0.92208 1.20880 0.94553 0.93555 0.97156 1.20152 1.07731 1.04161 0.89838 1.19613 0.91073 0.90211 0.88082 1.83905 1.65555 1.44584 1.12324 1.21475 1.32429 1.12203 0.80790 0.88542 1.25390 0.95491 0.96157 0.99404 1.70011 1.29467 1.19254 1.29745 0.85649 0.78488 0.79350 0.79651 1.19641 1.20046 1.18951 1.21104 1.05824 0.99895 0.99315 1.20988 0.95798 0.97201 0.91389 0.90054 0.92105 0.92918 0.92669 0.92074 0.90117 0.90439 0.91530 0.94884 0.90410 0.84802 0.84531 0.76751 0.86027 0.85961 0.86433 0.86144 0.91605 0.85131 0.86833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.59 8.05 37.16 0.30 -1.29 16 2 C 0.18 1.61 0.83 -131.82 -0.11 1.50 16 3 C -0.16 -1.62 8.05 37.16 0.30 -1.32 16 4 C -0.12 -0.84 4.64 -26.73 -0.12 -0.96 16 5 C 0.06 0.38 6.08 -3.83 -0.02 0.36 16 6 N -0.85 -4.85 9.62 -10.37 -0.10 -4.95 16 7 N -0.73 -7.38 5.10 -49.03 -0.25 -7.63 16 8 C 0.56 7.52 7.15 -13.04 -0.09 7.43 16 9 O -0.55 -8.97 12.43 5.17 0.06 -8.90 16 10 C -0.28 -3.81 9.41 -37.50 -0.35 -4.17 16 11 C 0.04 0.56 9.45 -37.19 -0.35 0.21 16 12 C -0.20 -3.38 5.87 -105.03 -0.62 -3.99 16 13 C -0.04 -0.74 9.40 -39.15 -0.37 -1.11 16 14 C -0.20 -3.99 9.97 -39.47 -0.39 -4.39 16 15 C 0.17 3.83 6.66 -38.88 -0.26 3.58 16 16 O -0.16 -4.42 9.74 0.72 0.01 -4.41 16 17 C -0.39 -10.46 9.48 30.91 0.29 -10.17 16 18 H 0.10 2.36 5.18 -52.49 -0.27 2.08 16 19 C 0.04 1.09 5.49 -17.51 -0.10 1.00 16 20 N -0.85 -23.84 13.67 55.48 0.76 -23.08 16 21 Si 0.94 19.52 29.55 -169.99 -5.02 14.50 16 22 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 23 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 24 H -0.27 -5.28 7.11 56.52 0.40 -4.87 16 25 C -0.24 -5.02 9.14 -39.46 -0.36 -5.38 16 26 C -0.04 -0.63 9.78 -39.15 -0.38 -1.01 16 27 H 0.08 1.02 6.16 -51.93 -0.32 0.70 16 28 H 0.06 0.48 6.43 -51.93 -0.33 0.15 16 29 H 0.05 0.49 8.14 -51.92 -0.42 0.07 16 30 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.49 6.43 -51.93 -0.33 0.16 16 32 H 0.08 1.02 6.16 -51.92 -0.32 0.70 16 33 H 0.08 0.58 8.14 -51.92 -0.42 0.16 16 34 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.03 0.20 6.43 -51.93 -0.33 -0.14 16 36 H 0.08 0.52 6.43 -51.93 -0.33 0.18 16 37 H 0.34 1.57 8.99 -39.29 -0.35 1.22 16 38 H 0.34 1.44 9.08 -39.29 -0.36 1.08 16 39 H 0.40 3.16 8.45 -40.82 -0.34 2.81 16 40 H 0.12 1.42 6.07 -52.49 -0.32 1.10 16 41 H 0.12 1.83 7.52 -52.49 -0.39 1.43 16 42 H 0.12 1.63 6.16 -52.48 -0.32 1.31 16 43 H 0.12 2.30 8.06 -52.48 -0.42 1.87 16 44 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 45 H 0.13 2.68 5.62 -52.48 -0.29 2.38 16 46 H 0.11 1.71 8.06 -52.49 -0.42 1.29 16 LS Contribution 373.02 15.07 5.62 5.62 Total: -1.00 -30.48 373.02 -7.87 -38.35 By element: Atomic # 1 Polarization: 16.53 SS G_CDS: -6.30 Total: 10.22 kcal Atomic # 6 Polarization: -17.08 SS G_CDS: -2.64 Total: -19.72 kcal Atomic # 7 Polarization: -36.06 SS G_CDS: 0.41 Total: -35.65 kcal Atomic # 8 Polarization: -13.39 SS G_CDS: 0.07 Total: -13.32 kcal Atomic # 14 Polarization: 19.52 SS G_CDS: -5.02 Total: 14.50 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -30.48 -7.87 -38.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493734549.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.318 kcal (2) G-P(sol) polarization free energy of solvation -30.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds