Wall clock time and date at job start Tue Mar 31 2020 12:00:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.46977 * 2 1 4 4 C 1.53000 * 109.46962 * 240.00264 * 2 1 3 5 5 C 1.52997 * 109.47320 * 59.99953 * 4 2 1 6 6 N 1.46898 * 109.46901 * 179.97438 * 5 4 2 7 7 N 1.46500 * 109.47270 * 120.00085 * 2 1 3 8 8 C 1.34776 * 119.99784 * 299.99985 * 7 2 1 9 9 O 1.21722 * 120.00532 * 0.02562 * 8 7 2 10 10 C 1.46261 * 119.99815 * 180.27468 * 8 7 2 11 11 C 1.35019 * 120.00171 * 179.72881 * 10 8 7 12 12 C 1.46959 * 120.00209 * 180.02562 * 11 10 8 13 13 C 1.40017 * 120.10027 * 359.71653 * 12 11 10 14 14 C 1.37600 * 119.89871 * 179.76963 * 13 12 11 15 15 C 1.39173 * 120.09945 * 0.50997 * 14 13 12 16 16 O 1.35570 * 119.89967 * 179.76472 * 15 14 13 17 17 C 1.34788 * 117.00091 * 174.42353 * 16 15 14 18 18 H 1.07991 * 119.99907 * 5.05912 * 17 16 15 19 19 C 1.38714 * 119.99689 * 185.05654 * 17 16 15 20 20 N 1.31507 * 120.00463 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 119.99779 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47231 * 89.99856 * 21 19 17 23 23 H 1.48503 * 109.46780 * 210.00144 * 21 19 17 24 24 H 1.48504 * 109.46893 * 329.99641 * 21 19 17 25 25 C 1.39180 * 120.20294 * 359.74773 * 15 14 13 26 26 C 1.37600 * 120.10236 * 359.97438 * 25 15 14 27 27 H 1.08994 * 109.47179 * 299.99565 * 1 2 3 28 28 H 1.08994 * 109.47523 * 60.00246 * 1 2 3 29 29 H 1.09009 * 109.46895 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46924 * 180.02562 * 3 2 1 31 31 H 1.08994 * 109.46793 * 300.00201 * 3 2 1 32 32 H 1.09008 * 109.46843 * 60.00170 * 3 2 1 33 33 H 1.09007 * 109.46873 * 179.97438 * 4 2 1 34 34 H 1.09001 * 109.47035 * 299.99199 * 4 2 1 35 35 H 1.08999 * 109.47139 * 300.00004 * 5 4 2 36 36 H 1.08995 * 109.47040 * 59.99831 * 5 4 2 37 37 H 1.00905 * 111.00245 * 56.04952 * 6 5 4 38 38 H 1.00905 * 110.99526 * 179.97438 * 6 5 4 39 39 H 0.96999 * 120.00112 * 119.99958 * 7 2 1 40 40 H 1.08000 * 119.99981 * 359.72341 * 10 8 7 41 41 H 1.08000 * 119.99847 * 359.97438 * 11 10 8 42 42 H 1.08005 * 120.04922 * 0.02969 * 13 12 11 43 43 H 1.08005 * 119.95289 * 180.23375 * 14 13 12 44 44 H 0.96998 * 120.00154 * 179.97438 * 20 19 17 45 45 H 1.08007 * 119.94868 * 179.97438 * 25 15 14 46 46 H 1.07997 * 120.05056 * 180.02562 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5300 0.0001 -2.4985 6 7 2.0201 -0.6921 -3.6979 7 7 2.0184 -0.6906 1.1961 8 6 1.6928 -0.2301 2.4202 9 8 0.9926 0.7592 2.5320 10 6 2.1853 -0.9161 3.6144 11 6 1.8637 -0.4517 4.8408 12 6 2.3590 -1.1406 6.0407 13 6 3.1597 -2.2823 5.9147 14 6 3.6252 -2.9213 7.0409 15 6 3.2924 -2.4406 8.3039 16 8 3.7493 -3.0762 9.4108 17 6 3.4895 -2.4972 10.5999 18 1 2.8708 -1.6133 10.6464 19 6 4.0168 -3.0368 11.7639 20 7 4.7697 -4.1135 11.7074 21 14 3.6561 -2.2349 13.4121 22 1 2.4233 -2.8265 13.9912 23 1 4.7966 -2.4655 14.3348 24 1 3.4619 -0.7751 13.2203 25 6 2.4923 -1.3093 8.4340 26 6 2.0270 -0.6604 7.3134 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0278 0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9563 -0.8899 32 1 1.6766 1.9564 0.8901 33 1 3.1300 -0.7208 -1.2495 34 1 1.6767 -1.7489 -1.2492 35 1 0.4400 0.0001 -2.4985 36 1 1.8933 1.0277 -2.4984 37 1 1.7510 -1.6646 -3.6896 38 1 1.6962 -0.2347 -4.5370 39 1 2.5760 -1.4793 1.1071 40 1 2.8062 -1.7942 3.5153 41 1 1.2430 0.4266 4.9399 42 1 3.4151 -2.6583 4.9349 43 1 4.2460 -3.7998 6.9447 44 1 5.1388 -4.4906 12.5213 45 1 2.2363 -0.9401 9.4162 46 1 1.4066 0.2176 7.4154 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493734549.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:00:03 Heat of formation + Delta-G solvation = -54.326297 kcal Electronic energy + Delta-G solvation = -25104.464631 eV Core-core repulsion = 21379.763235 eV Total energy + Delta-G solvation = -3724.701396 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.18453 -40.78992 -38.69302 -38.13681 -35.26425 -34.72376 -34.02258 -32.64486 -31.96111 -29.60824 -28.61759 -28.25794 -27.51037 -25.30439 -23.93808 -23.53719 -22.00891 -20.60516 -20.34356 -19.71538 -18.83292 -18.27928 -17.17666 -16.69432 -16.47263 -16.38585 -15.95297 -15.88196 -15.79108 -15.60438 -15.41273 -15.01131 -14.73942 -14.58001 -14.26532 -14.10248 -13.96270 -13.59382 -13.32461 -13.18143 -13.12826 -12.79234 -12.70247 -12.57910 -12.53632 -12.26130 -12.18359 -12.12752 -11.92575 -11.78904 -11.21425 -11.09345 -10.58894 -10.55543 -10.01488 -9.89223 -9.55962 -8.67142 -8.52124 -6.18418 -0.22089 0.58410 1.16057 1.35729 1.46048 1.52896 2.15298 2.27600 2.42518 2.86949 3.18136 3.42636 3.52140 3.79456 3.91251 3.95121 4.02538 4.08634 4.15335 4.29222 4.33141 4.38438 4.43442 4.48225 4.62781 4.67162 4.77901 4.80253 4.94079 4.95140 4.97008 5.03552 5.06455 5.14322 5.19931 5.26513 5.34713 5.42245 5.43777 5.59150 5.63818 5.68277 5.82838 5.97365 6.10835 6.25015 6.60628 6.71469 6.92211 7.38211 7.69335 8.69897 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.041019 B = 0.001805 C = 0.001751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.453997 B =15508.420328 C =15983.970520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.175 3.825 3 C -0.162 4.162 4 C -0.110 4.110 5 C 0.062 3.938 6 N -0.861 5.861 7 N -0.712 5.712 8 C 0.552 3.448 9 O -0.581 6.581 10 C -0.246 4.246 11 C 0.013 3.987 12 C -0.169 4.169 13 C -0.039 4.039 14 C -0.207 4.207 15 C 0.129 3.871 16 O -0.220 6.220 17 C -0.418 4.418 18 H 0.105 0.895 19 C -0.018 4.018 20 N -0.913 5.913 21 Si 1.018 2.982 22 H -0.263 1.263 23 H -0.271 1.271 24 H -0.253 1.253 25 C -0.249 4.249 26 C -0.041 4.041 27 H 0.050 0.950 28 H 0.077 0.923 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.077 0.923 32 H 0.050 0.950 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.038 0.962 36 H 0.074 0.926 37 H 0.346 0.654 38 H 0.351 0.649 39 H 0.413 0.587 40 H 0.149 0.851 41 H 0.125 0.875 42 H 0.160 0.840 43 H 0.123 0.877 44 H 0.275 0.725 45 H 0.124 0.876 46 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.785 7.043 -26.375 28.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.089 3.911 3 C -0.220 4.220 4 C -0.148 4.148 5 C -0.069 4.069 6 N -0.392 5.392 7 N -0.363 5.363 8 C 0.343 3.657 9 O -0.463 6.463 10 C -0.266 4.266 11 C -0.007 4.007 12 C -0.170 4.170 13 C -0.056 4.056 14 C -0.226 4.226 15 C 0.077 3.923 16 O -0.125 6.125 17 C -0.493 4.493 18 H 0.123 0.877 19 C -0.217 4.217 20 N -0.550 5.550 21 Si 0.837 3.163 22 H -0.188 1.188 23 H -0.195 1.195 24 H -0.176 1.176 25 C -0.268 4.268 26 C -0.059 4.059 27 H 0.069 0.931 28 H 0.096 0.904 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.096 0.904 32 H 0.070 0.930 33 H 0.095 0.905 34 H 0.095 0.905 35 H 0.056 0.944 36 H 0.092 0.908 37 H 0.159 0.841 38 H 0.164 0.836 39 H 0.249 0.751 40 H 0.166 0.834 41 H 0.142 0.858 42 H 0.177 0.823 43 H 0.141 0.859 44 H 0.084 0.916 45 H 0.142 0.858 46 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -6.293 7.563 -25.897 27.703 hybrid contribution -0.723 -0.452 0.980 1.299 sum -7.016 7.110 -24.916 26.844 Atomic orbital electron populations 1.22236 0.94737 1.02143 1.02835 1.20296 0.94002 0.92464 0.84382 1.22234 1.01000 0.95960 1.02790 1.21689 1.01858 0.99501 0.91731 1.21840 0.97338 0.98358 0.89358 1.58692 1.68293 1.07505 1.04676 1.45936 1.53553 1.32202 1.04627 1.18431 0.79409 0.83462 0.84416 1.90725 1.40088 1.27979 1.87557 1.22834 1.07873 1.04443 0.91478 1.22145 0.92169 0.95605 0.90800 1.18798 1.06025 0.99490 0.92716 1.21282 0.93485 0.92946 0.97909 1.20424 1.07889 1.04541 0.89750 1.20187 0.92225 0.91562 0.88353 1.83885 1.68746 1.46671 1.13213 1.21898 1.33123 1.12873 0.81447 0.87740 1.26602 0.95173 0.96697 1.03200 1.70146 1.32415 1.21753 1.30714 0.84587 0.78488 0.78761 0.74420 1.18753 1.19542 1.17649 1.21203 1.05766 0.99607 1.00228 1.21314 0.95873 0.97928 0.90830 0.93063 0.90388 0.92437 0.92586 0.90376 0.93046 0.90543 0.90488 0.94381 0.90793 0.84085 0.83606 0.75079 0.83391 0.85763 0.82305 0.85943 0.91600 0.85791 0.83859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.68 8.05 71.98 0.58 -2.11 16 2 C 0.17 2.64 0.83 3.60 0.00 2.65 16 3 C -0.16 -2.81 8.05 71.98 0.58 -2.23 16 4 C -0.11 -1.13 4.64 30.59 0.14 -0.99 16 5 C 0.06 0.58 6.08 86.30 0.52 1.10 16 6 N -0.86 -7.17 9.62 -186.73 -1.80 -8.97 16 7 N -0.71 -11.83 5.10 -427.23 -2.18 -14.01 16 8 C 0.55 13.03 7.15 86.33 0.62 13.64 16 9 O -0.58 -17.61 12.43 -4.42 -0.05 -17.67 16 10 C -0.25 -5.54 9.41 23.62 0.22 -5.31 16 11 C 0.01 0.34 9.45 23.82 0.23 0.56 16 12 C -0.17 -5.29 5.87 -20.13 -0.12 -5.41 16 13 C -0.04 -1.21 9.40 22.55 0.21 -1.00 16 14 C -0.21 -8.28 9.97 22.34 0.22 -8.06 16 15 C 0.13 6.17 6.66 22.72 0.15 6.32 16 16 O -0.22 -12.80 9.74 -20.34 -0.20 -12.99 16 17 C -0.42 -23.59 9.48 67.93 0.64 -22.95 16 18 H 0.11 5.40 5.18 -2.92 -0.02 5.38 16 19 C -0.02 -0.99 5.49 84.86 0.47 -0.52 16 20 N -0.91 -54.46 13.67 21.62 0.30 -54.16 16 21 Si 1.02 41.60 29.55 68.60 2.03 43.63 16 22 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 23 H -0.27 -10.66 7.11 99.48 0.71 -9.95 16 24 H -0.25 -9.62 7.11 99.48 0.71 -8.91 16 25 C -0.25 -10.50 9.14 22.35 0.20 -10.30 16 26 C -0.04 -1.42 9.78 22.55 0.22 -1.19 16 27 H 0.05 1.20 6.16 -2.39 -0.01 1.18 16 28 H 0.08 1.01 6.43 -2.39 -0.02 0.99 16 29 H 0.06 0.89 8.14 -2.38 -0.02 0.87 16 30 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.08 1.07 6.43 -2.39 -0.02 1.05 16 32 H 0.05 1.22 6.16 -2.38 -0.01 1.21 16 33 H 0.08 0.85 8.14 -2.38 -0.02 0.84 16 34 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 35 H 0.04 0.32 6.43 -2.39 -0.02 0.30 16 36 H 0.07 0.75 6.43 -2.39 -0.02 0.74 16 37 H 0.35 2.13 8.99 -89.69 -0.81 1.32 16 38 H 0.35 1.99 9.08 -89.69 -0.81 1.18 16 39 H 0.41 4.63 8.45 -92.71 -0.78 3.85 16 40 H 0.15 2.56 6.07 -2.91 -0.02 2.54 16 41 H 0.12 3.36 7.52 -2.91 -0.02 3.34 16 42 H 0.16 3.61 6.16 -2.91 -0.02 3.59 16 43 H 0.12 4.75 8.06 -2.91 -0.02 4.73 16 44 H 0.27 14.98 8.31 -92.71 -0.77 14.21 16 45 H 0.12 5.29 5.62 -2.91 -0.02 5.27 16 46 H 0.14 3.99 8.06 -2.91 -0.02 3.97 16 Total: -1.00 -71.82 373.02 1.63 -70.19 By element: Atomic # 1 Polarization: 31.14 SS G_CDS: -1.36 Total: 29.78 kcal Atomic # 6 Polarization: -40.69 SS G_CDS: 4.90 Total: -35.80 kcal Atomic # 7 Polarization: -73.46 SS G_CDS: -3.68 Total: -77.14 kcal Atomic # 8 Polarization: -30.41 SS G_CDS: -0.25 Total: -30.66 kcal Atomic # 14 Polarization: 41.60 SS G_CDS: 2.03 Total: 43.63 kcal Total: -71.82 1.63 -70.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493734549.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.862 kcal (2) G-P(sol) polarization free energy of solvation -71.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds