Wall clock time and date at job start Tue Mar 31 2020 13:12:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47334 * 2 1 4 4 C 1.52998 * 109.47104 * 239.99832 * 2 1 3 5 5 O 1.45197 * 109.46942 * 120.00152 * 2 1 3 6 6 C 1.34663 * 117.00270 * 59.99934 * 5 2 1 7 7 O 1.21524 * 119.99541 * 359.97438 * 6 5 2 8 8 N 1.34771 * 119.99937 * 180.02562 * 6 5 2 9 9 C 1.46537 * 124.99584 * 180.02562 * 8 6 5 10 10 C 1.53725 * 105.21525 * 179.97438 * 9 8 6 11 11 C 1.51228 * 104.63504 * 359.79582 * 10 9 8 12 12 C 1.38161 * 130.88243 * 179.55818 * 11 10 9 13 13 C 1.38818 * 120.09275 * 180.35393 * 12 11 10 14 14 N 1.39912 * 120.16415 * 180.23579 * 13 12 11 15 15 C 1.46503 * 119.99912 * 179.97438 * 14 13 12 16 16 C 1.50701 * 109.46733 * 179.97438 * 15 14 13 17 17 H 1.07993 * 120.00450 * 0.02562 * 16 15 14 18 18 C 1.37875 * 119.99575 * 179.97438 * 16 15 14 19 19 N 1.31516 * 120.00157 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 119.99963 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47103 * 90.00238 * 20 18 16 22 22 H 1.48498 * 109.47104 * 209.99966 * 20 18 16 23 23 H 1.48497 * 109.46944 * 330.00067 * 20 18 16 24 24 C 1.38896 * 119.66997 * 0.25656 * 13 12 11 25 25 C 1.37789 * 120.14362 * 0.02562 * 24 13 12 26 26 C 1.38535 * 108.57893 * 0.34921 * 11 10 9 27 27 H 1.08996 * 109.47321 * 299.99956 * 1 2 3 28 28 H 1.09007 * 109.47192 * 60.00131 * 1 2 3 29 29 H 1.09004 * 109.47133 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47323 * 180.02562 * 3 2 1 31 31 H 1.08995 * 109.47214 * 300.00072 * 3 2 1 32 32 H 1.09004 * 109.46727 * 59.99490 * 3 2 1 33 33 H 1.09004 * 109.47484 * 300.00224 * 4 2 1 34 34 H 1.09007 * 109.47066 * 59.99959 * 4 2 1 35 35 H 1.08995 * 109.47170 * 179.97438 * 4 2 1 36 36 H 1.08996 * 110.29627 * 298.93905 * 9 8 6 37 37 H 1.09004 * 110.29263 * 61.06571 * 9 8 6 38 38 H 1.09004 * 110.40301 * 118.78738 * 10 9 8 39 39 H 1.08997 * 110.40626 * 241.09813 * 10 9 8 40 40 H 1.08002 * 119.95654 * 0.63809 * 12 11 10 41 41 H 0.97003 * 119.99743 * 0.02562 * 14 13 12 42 42 H 1.08995 * 109.47183 * 299.99824 * 15 14 13 43 43 H 1.08999 * 109.46839 * 60.00615 * 15 14 13 44 44 H 0.97007 * 119.99842 * 180.02562 * 19 18 16 45 45 H 1.08000 * 119.92878 * 180.02562 * 24 13 12 46 46 H 1.08000 * 119.80509 * 179.97438 * 25 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0139 -0.6845 1.1855 6 6 1.6521 -1.9726 1.3383 7 8 0.9507 -2.5097 0.5039 8 7 2.0671 -2.6656 2.4172 9 6 1.7404 -4.0674 2.6921 10 6 2.4400 -4.3913 4.0221 11 6 3.1373 -3.1065 4.4098 12 6 3.9132 -2.7951 5.5097 13 6 4.4465 -1.5209 5.6470 14 7 5.2366 -1.2054 6.7578 15 6 5.7981 0.1404 6.8988 16 6 6.6021 0.2184 8.1710 17 1 6.6867 -0.6478 8.8104 18 6 7.2305 1.3955 8.5182 19 7 7.1279 2.4503 7.7394 20 14 8.2277 1.4921 10.0949 21 1 9.6358 1.1132 9.8140 22 1 8.1845 2.8791 10.6237 23 1 7.6556 0.5609 11.1002 24 6 4.1916 -0.5606 4.6764 25 6 3.4127 -0.8716 3.5832 26 6 2.8747 -2.1520 3.4407 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8899 32 1 1.6766 1.9563 0.8900 33 1 1.6766 -1.7490 -1.2493 34 1 1.6766 -0.2074 -2.1393 35 1 3.1299 -0.7209 -1.2494 36 1 0.6622 -4.1919 2.7916 37 1 2.1240 -4.7078 1.8978 38 1 1.7071 -4.6727 4.7783 39 1 3.1682 -5.1904 3.8837 40 1 4.1089 -3.5455 6.2615 41 1 5.4131 -1.8779 7.4342 42 1 6.4432 0.3560 6.0471 43 1 4.9888 0.8697 6.9356 44 1 7.5703 3.2783 7.9835 45 1 4.6048 0.4320 4.7788 46 1 3.2177 -0.1206 2.8319 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000496904989.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:12:07 Heat of formation + Delta-G solvation = -67.176862 kcal Electronic energy + Delta-G solvation = -26717.745746 eV Core-core repulsion = 22992.487107 eV Total energy + Delta-G solvation = -3725.258638 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.32453 -40.93399 -38.87460 -37.62782 -35.77167 -35.20340 -34.21310 -33.30300 -30.57523 -29.82356 -28.36904 -28.32149 -27.88010 -25.27721 -24.58345 -23.90246 -22.27897 -21.47322 -20.65842 -19.29468 -18.92205 -17.75787 -17.72808 -17.23931 -16.97672 -16.47257 -16.19943 -16.14238 -15.58420 -15.26187 -14.96690 -14.78216 -14.59553 -14.47763 -14.08753 -13.73103 -13.53397 -13.51873 -13.36428 -13.31283 -13.02594 -12.89731 -12.88719 -12.85948 -12.77505 -12.65376 -12.40065 -12.36208 -12.12480 -11.67199 -11.66531 -11.42622 -11.40164 -11.21397 -10.70995 -9.95130 -9.57597 -8.28916 -7.82593 -6.42343 0.47914 0.55920 1.00026 1.42443 1.43483 1.54592 1.72447 2.35208 2.67546 2.90718 2.95793 3.06887 3.60380 3.67890 3.72502 3.78798 3.93357 4.15594 4.20225 4.24891 4.41533 4.52743 4.57344 4.61010 4.65531 4.71688 4.75562 4.83223 4.85853 4.86324 5.01945 5.03638 5.07014 5.08545 5.16332 5.26621 5.30108 5.33199 5.38302 5.46768 5.50061 5.55372 5.61633 5.87135 5.98694 6.39203 6.50155 6.76846 7.12349 7.19970 7.32274 8.82813 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.016854 B = 0.002901 C = 0.002521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1660.883453 B = 9649.576444 C =11103.380578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.119 3.881 3 C -0.139 4.139 4 C -0.176 4.176 5 O -0.364 6.364 6 C 0.657 3.343 7 O -0.576 6.576 8 N -0.535 5.535 9 C 0.122 3.878 10 C -0.075 4.075 11 C -0.074 4.074 12 C -0.166 4.166 13 C 0.200 3.800 14 N -0.732 5.732 15 C 0.273 3.727 16 C -0.556 4.556 17 H 0.073 0.927 18 C 0.008 3.992 19 N -0.927 5.927 20 Si 0.976 3.024 21 H -0.272 1.272 22 H -0.282 1.282 23 H -0.261 1.261 24 C -0.194 4.194 25 C -0.080 4.080 26 C 0.044 3.956 27 H 0.057 0.943 28 H 0.095 0.905 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.108 0.892 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.095 0.905 35 H 0.057 0.943 36 H 0.093 0.907 37 H 0.092 0.908 38 H 0.117 0.883 39 H 0.117 0.883 40 H 0.146 0.854 41 H 0.400 0.600 42 H -0.010 1.010 43 H -0.010 1.010 44 H 0.268 0.732 45 H 0.106 0.894 46 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.087 -10.476 -13.716 21.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.083 3.917 3 C -0.196 4.196 4 C -0.233 4.233 5 O -0.279 6.279 6 C 0.413 3.587 7 O -0.467 6.467 8 N -0.267 5.267 9 C 0.003 3.997 10 C -0.112 4.112 11 C -0.078 4.078 12 C -0.189 4.189 13 C 0.093 3.907 14 N -0.359 5.359 15 C 0.150 3.850 16 C -0.594 4.594 17 H 0.091 0.909 18 C -0.191 4.191 19 N -0.565 5.565 20 Si 0.800 3.200 21 H -0.197 1.197 22 H -0.208 1.208 23 H -0.185 1.185 24 C -0.217 4.217 25 C -0.101 4.101 26 C -0.051 4.051 27 H 0.076 0.924 28 H 0.114 0.886 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.126 0.874 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.114 0.886 35 H 0.076 0.924 36 H 0.111 0.889 37 H 0.111 0.889 38 H 0.135 0.865 39 H 0.135 0.865 40 H 0.164 0.836 41 H 0.234 0.766 42 H 0.008 0.992 43 H 0.008 0.992 44 H 0.077 0.923 45 H 0.124 0.876 46 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -12.252 -10.163 -14.154 21.301 hybrid contribution 0.717 0.606 0.791 1.228 sum -11.534 -9.557 -13.363 20.073 Atomic orbital electron populations 1.22451 0.93495 1.03796 1.03606 1.22505 0.94976 0.92595 0.81649 1.21911 1.02255 0.91115 1.04319 1.22451 1.01417 1.02281 0.97199 1.86447 1.71205 1.22886 1.47362 1.17806 0.78730 0.80986 0.81156 1.90876 1.41792 1.70993 1.43065 1.44683 1.49617 1.13401 1.18962 1.22246 1.01882 0.77197 0.98370 1.21260 0.99963 0.94499 0.95501 1.19906 0.98417 0.96083 0.93380 1.19881 1.03790 0.95033 1.00195 1.18104 0.90982 0.93732 0.87888 1.45092 1.53851 1.14163 1.22802 1.18543 0.91448 0.79580 0.95478 1.21597 1.32119 0.98400 1.07250 0.90937 1.25911 0.97414 0.94872 1.00945 1.70082 1.44290 1.02707 1.39469 0.85280 0.78621 0.77606 0.78484 1.19741 1.20755 1.18532 1.20404 1.05530 0.99516 0.96289 1.20428 0.97217 0.94828 0.97661 1.18125 1.00309 0.95026 0.91649 0.92438 0.88623 0.91597 0.91733 0.87392 0.91731 0.91597 0.88623 0.92439 0.88914 0.88930 0.86466 0.86503 0.83605 0.76557 0.99185 0.99172 0.92282 0.87623 0.85340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.60 8.37 71.98 0.60 -3.00 16 2 C 0.12 2.63 1.13 -10.80 -0.01 2.62 16 3 C -0.14 -2.45 8.85 71.98 0.64 -1.82 16 4 C -0.18 -3.60 8.37 71.98 0.60 -3.00 16 5 O -0.36 -10.52 7.14 -55.73 -0.40 -10.92 16 6 C 0.66 19.71 7.86 129.79 1.02 20.73 16 7 O -0.58 -17.89 12.17 19.76 0.24 -17.65 16 8 N -0.54 -15.00 3.14 -758.36 -2.38 -17.38 16 9 C 0.12 2.40 7.06 86.62 0.61 3.01 16 10 C -0.08 -1.27 6.93 30.26 0.21 -1.06 16 11 C -0.07 -2.00 6.22 -19.64 -0.12 -2.12 16 12 C -0.17 -4.93 9.89 22.39 0.22 -4.71 16 13 C 0.20 7.55 6.66 38.15 0.25 7.80 16 14 N -0.73 -30.76 5.74 -343.01 -1.97 -32.73 16 15 C 0.27 14.20 4.67 85.63 0.40 14.60 16 16 C -0.56 -30.06 9.28 25.60 0.24 -29.82 16 17 H 0.07 3.67 7.60 -2.91 -0.02 3.65 16 18 C 0.01 0.46 5.46 84.65 0.46 0.92 16 19 N -0.93 -54.11 13.29 21.45 0.28 -53.83 16 20 Si 0.98 42.23 29.54 68.60 2.03 44.26 16 21 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 22 H -0.28 -12.01 7.11 99.48 0.71 -11.31 16 23 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 24 C -0.19 -7.62 9.30 22.32 0.21 -7.42 16 25 C -0.08 -2.81 9.46 22.50 0.21 -2.59 16 26 C 0.04 1.36 6.64 38.22 0.25 1.61 16 27 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 28 H 0.10 1.41 8.14 -2.38 -0.02 1.39 16 29 H 0.07 1.63 5.88 -2.38 -0.01 1.62 16 30 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.07 1.63 5.88 -2.38 -0.01 1.62 16 34 H 0.10 1.41 8.14 -2.38 -0.02 1.39 16 35 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.09 1.59 8.14 -2.38 -0.02 1.57 16 38 H 0.12 1.45 8.14 -2.39 -0.02 1.43 16 39 H 0.12 1.45 8.14 -2.39 -0.02 1.43 16 40 H 0.15 3.53 8.06 -2.91 -0.02 3.50 16 41 H 0.40 15.07 8.34 -92.71 -0.77 14.30 16 42 H -0.01 -0.55 7.96 -2.39 -0.02 -0.57 16 43 H -0.01 -0.54 7.96 -2.39 -0.02 -0.56 16 44 H 0.27 14.68 8.31 -92.70 -0.77 13.91 16 45 H 0.11 4.61 6.74 -2.91 -0.02 4.59 16 46 H 0.13 4.38 6.04 -2.91 -0.02 4.36 16 Total: -1.00 -67.19 370.82 3.82 -63.37 By element: Atomic # 1 Polarization: 28.91 SS G_CDS: 0.21 Total: 29.12 kcal Atomic # 6 Polarization: -10.04 SS G_CDS: 5.80 Total: -4.24 kcal Atomic # 7 Polarization: -99.88 SS G_CDS: -4.06 Total: -103.94 kcal Atomic # 8 Polarization: -28.41 SS G_CDS: -0.16 Total: -28.57 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 2.03 Total: 44.26 kcal Total: -67.19 3.82 -63.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496904989.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.810 kcal (2) G-P(sol) polarization free energy of solvation -67.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds