Wall clock time and date at job start Tue Mar 31 2020 12:15:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.46829 * 2 1 4 4 C 1.53005 * 109.47037 * 180.02562 * 3 2 1 5 5 H 1.08998 * 109.48541 * 54.97075 * 4 3 2 6 6 C 1.53090 * 109.47701 * 175.00113 * 4 3 2 7 7 C 1.53186 * 109.15897 * 177.59149 * 6 4 3 8 8 H 1.08997 * 109.54384 * 62.97375 * 7 6 4 9 9 C 1.50703 * 109.53961 * 183.15245 * 7 6 4 10 10 O 1.21270 * 120.00166 * 359.97438 * 9 7 6 11 11 N 1.34776 * 119.99646 * 179.97438 * 9 7 6 12 12 C 1.39470 * 119.99976 * 175.20141 * 11 9 7 13 13 C 1.38596 * 119.57883 * 185.03223 * 12 11 9 14 14 C 1.40810 * 118.79405 * 180.24890 * 13 12 11 15 15 C 1.41536 * 120.99756 * 179.79787 * 14 13 12 16 16 H 1.08002 * 120.00317 * 155.94760 * 15 14 13 17 17 C 1.40039 * 120.00294 * 336.22225 * 15 14 13 18 18 N 1.30743 * 119.99579 * 342.87374 * 17 15 14 19 19 Si 1.86793 * 120.00139 * 162.86753 * 17 15 14 20 20 H 1.48499 * 109.46960 * 60.00683 * 19 17 15 21 21 H 1.48501 * 109.47232 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47677 * 300.00668 * 19 17 15 23 23 C 1.41180 * 118.00400 * 359.52782 * 14 13 12 24 24 C 1.37578 * 119.01697 * 0.24645 * 23 14 13 25 25 N 1.32088 * 121.11279 * 359.97438 * 24 23 14 26 26 C 1.53181 * 109.03313 * 303.01735 * 7 6 4 27 27 C 1.53090 * 109.16195 * 56.98277 * 26 7 6 28 28 O 1.42899 * 109.47641 * 294.94304 * 4 3 2 29 29 H 1.09005 * 109.47352 * 60.00186 * 1 2 3 30 30 H 1.09002 * 109.46746 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47464 * 299.99787 * 1 2 3 32 32 H 1.09002 * 109.46833 * 240.00599 * 2 1 3 33 33 H 1.08999 * 109.47272 * 120.00258 * 2 1 3 34 34 H 1.08999 * 109.46923 * 59.99882 * 3 2 1 35 35 H 1.09005 * 109.47001 * 300.00029 * 3 2 1 36 36 H 1.08994 * 109.52218 * 57.68568 * 6 4 3 37 37 H 1.08998 * 109.52267 * 297.49020 * 6 4 3 38 38 H 0.97005 * 120.00178 * 355.20877 * 11 9 7 39 39 H 1.07999 * 120.60702 * 0.02680 * 13 12 11 40 40 H 0.96996 * 119.99824 * 179.97438 * 18 17 15 41 41 H 1.08005 * 120.48760 * 180.27585 * 23 14 13 42 42 H 1.08006 * 119.44622 * 180.02562 * 24 23 14 43 43 H 1.09000 * 109.51901 * 176.88669 * 26 7 6 44 44 H 1.09001 * 109.52427 * 297.07343 * 26 7 6 45 45 H 1.09003 * 109.47717 * 182.40560 * 27 26 7 46 46 H 1.09006 * 109.48221 * 62.37444 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5700 1.4426 -0.0006 5 1 3.9332 0.8529 -0.8423 6 6 4.0803 2.8805 -0.1264 7 6 5.6110 2.8778 -0.0658 8 1 6.0085 2.3205 -0.9140 9 6 6.1197 4.2956 -0.1110 10 8 5.3367 5.2187 -0.1850 11 7 7.4449 4.5377 -0.0693 12 6 7.9206 5.8410 -0.2117 13 6 9.2865 6.0679 -0.2726 14 6 9.7487 7.3907 -0.4112 15 6 11.1336 7.6762 -0.4738 16 1 11.4773 8.5813 -0.9525 17 6 12.0585 6.7823 0.0798 18 7 11.6605 5.8744 0.9322 19 14 13.8608 6.8869 -0.3998 20 1 14.3929 8.2247 -0.0359 21 1 14.6262 5.8370 0.3193 22 1 13.9961 6.6820 -1.8643 23 6 8.7891 8.4232 -0.4918 24 6 7.4535 8.0995 -0.4270 25 7 7.0609 6.8456 -0.2921 26 6 6.0580 2.2143 1.2406 27 6 5.4712 0.8023 1.3135 28 8 4.0470 0.8743 1.2206 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 1.6765 1.9563 0.8900 35 1 1.6765 1.9564 -0.8900 36 1 3.6844 3.4805 0.6929 37 1 3.7543 3.3008 -1.0778 38 1 8.0679 3.8054 0.0598 39 1 9.9838 5.2455 -0.2111 40 1 12.3010 5.2549 1.3154 41 1 9.0990 9.4518 -0.6030 42 1 6.7136 8.8839 -0.4884 43 1 7.1462 2.1584 1.2668 44 1 5.7020 2.8010 2.0875 45 1 5.7508 0.3409 2.2606 46 1 5.8594 0.2042 0.4890 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000540941082.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:39 Heat of formation + Delta-G solvation = -72.682213 kcal Electronic energy + Delta-G solvation = -26353.820992 eV Core-core repulsion = 22628.323623 eV Total energy + Delta-G solvation = -3725.497368 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.29983 -39.03471 -37.69182 -35.20794 -34.38169 -33.83208 -33.50619 -31.36704 -30.56967 -28.70914 -27.42828 -26.03476 -25.10095 -22.98619 -22.09611 -21.83918 -21.11855 -20.45791 -19.37786 -17.69453 -17.09143 -16.64124 -15.89157 -15.78921 -15.26122 -15.01513 -14.84722 -14.57601 -14.24087 -14.16082 -13.86761 -13.77075 -13.42959 -12.93516 -12.90418 -12.72411 -12.61979 -12.38937 -12.13912 -11.73646 -11.50137 -11.47549 -11.35075 -11.25209 -11.12880 -10.93360 -10.80135 -10.71131 -10.39280 -10.32142 -10.18581 -9.77212 -9.72588 -9.36847 -9.21977 -8.03853 -7.73415 -7.06800 -6.84050 -4.64494 2.53062 2.76966 2.97880 3.00794 3.17981 3.43545 3.55729 3.67848 3.81470 4.44986 4.62195 4.66671 4.72384 4.78826 4.85464 4.92599 5.04615 5.09196 5.25057 5.32941 5.44971 5.47865 5.50692 5.54745 5.65642 5.67354 5.70763 5.77655 5.85773 5.93730 6.03419 6.05228 6.08060 6.17528 6.28848 6.56558 6.62981 6.78368 6.91746 7.06841 7.12787 7.36467 7.43611 7.74533 7.90640 8.19047 8.39492 8.67428 8.71009 8.87611 9.67145 10.02489 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.024154 B = 0.002581 C = 0.002376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.947900 B =10846.091831 C =11781.189034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.122 4.122 3 C -0.112 4.112 4 C 0.091 3.909 5 H 0.057 0.943 6 C -0.128 4.128 7 C -0.109 4.109 8 H 0.094 0.906 9 C 0.503 3.497 10 O -0.479 6.479 11 N -0.658 5.658 12 C 0.337 3.663 13 C -0.245 4.245 14 C 0.143 3.857 15 C -0.455 4.455 16 H 0.082 0.918 17 C 0.078 3.922 18 N -0.787 5.787 19 Si 0.912 3.088 20 H -0.264 1.264 21 H -0.277 1.277 22 H -0.263 1.263 23 C -0.285 4.285 24 C 0.119 3.881 25 N -0.555 5.555 26 C -0.149 4.149 27 C 0.066 3.934 28 O -0.378 6.378 29 H 0.052 0.948 30 H 0.052 0.948 31 H 0.054 0.946 32 H 0.058 0.942 33 H 0.069 0.931 34 H 0.072 0.928 35 H 0.076 0.924 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.406 0.594 39 H 0.127 0.873 40 H 0.282 0.718 41 H 0.102 0.898 42 H 0.123 0.877 43 H 0.079 0.921 44 H 0.079 0.921 45 H 0.096 0.904 46 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.139 -13.659 -0.807 17.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.159 4.159 3 C -0.149 4.149 4 C 0.033 3.967 5 H 0.075 0.925 6 C -0.166 4.166 7 C -0.131 4.131 8 H 0.112 0.888 9 C 0.287 3.713 10 O -0.349 6.349 11 N -0.304 5.304 12 C 0.112 3.888 13 C -0.271 4.271 14 C 0.135 3.865 15 C -0.486 4.486 16 H 0.100 0.900 17 C -0.141 4.141 18 N -0.413 5.413 19 Si 0.736 3.264 20 H -0.188 1.188 21 H -0.202 1.202 22 H -0.187 1.187 23 C -0.309 4.309 24 C -0.035 4.035 25 N -0.274 5.274 26 C -0.187 4.187 27 C -0.011 4.011 28 O -0.297 6.297 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.087 0.913 34 H 0.091 0.909 35 H 0.095 0.905 36 H 0.100 0.900 37 H 0.098 0.902 38 H 0.241 0.759 39 H 0.145 0.855 40 H 0.093 0.907 41 H 0.120 0.880 42 H 0.141 0.859 43 H 0.098 0.902 44 H 0.097 0.903 45 H 0.114 0.886 46 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -11.727 -13.471 -0.529 17.868 hybrid contribution 2.527 -0.001 -0.280 2.542 sum -9.200 -13.472 -0.809 16.333 Atomic orbital electron populations 1.21783 0.96044 1.01422 1.01773 1.21483 0.95505 0.96636 1.02321 1.21639 0.92606 0.97594 1.03079 1.22176 0.94691 0.92866 0.86926 0.92499 1.22024 0.93198 0.96951 1.04420 1.21412 0.97584 0.94480 0.99580 0.88831 1.20513 0.82539 0.90670 0.77562 1.90771 1.54620 1.45178 1.44329 1.43475 1.07509 1.07858 1.71546 1.18205 0.89425 0.84040 0.97111 1.21530 0.91675 0.98808 1.15041 1.17562 0.93178 0.90070 0.85694 1.19546 0.90303 1.05998 1.32799 0.89986 1.25966 1.01873 0.93763 0.92493 1.69773 1.37481 1.14587 1.19432 0.86306 0.81013 0.79108 0.79988 1.18839 1.20239 1.18705 1.21889 0.93915 0.98691 1.16375 1.21767 0.93676 0.91994 0.96103 1.67230 1.37308 0.99016 1.23891 1.22216 1.01588 0.97454 0.97455 1.22535 0.81147 0.95258 1.02183 1.87919 1.20743 1.82321 1.38722 0.92874 0.92932 0.92713 0.92362 0.91254 0.90924 0.90510 0.90046 0.90220 0.75889 0.85535 0.90654 0.87989 0.85909 0.90213 0.90259 0.88596 0.93099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.91 37.16 0.37 -0.76 16 2 C -0.12 -1.02 5.83 -26.73 -0.16 -1.18 16 3 C -0.11 -1.05 4.92 -26.73 -0.13 -1.18 16 4 C 0.09 0.96 2.64 -26.68 -0.07 0.89 16 5 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 6 C -0.13 -1.63 4.02 -26.59 -0.11 -1.73 16 7 C -0.11 -1.43 2.62 -91.58 -0.24 -1.67 16 8 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 9 C 0.50 9.35 7.12 -10.98 -0.08 9.27 16 10 O -0.48 -10.95 14.22 5.57 0.08 -10.88 16 11 N -0.66 -12.78 5.32 -11.49 -0.06 -12.84 16 12 C 0.34 8.17 7.42 -154.71 -1.15 7.02 16 13 C -0.25 -6.19 8.62 -38.48 -0.33 -6.52 16 14 C 0.14 3.76 5.60 -106.55 -0.60 3.17 16 15 C -0.46 -11.64 9.12 -37.65 -0.34 -11.98 16 16 H 0.08 2.00 7.90 -52.49 -0.41 1.59 16 17 C 0.08 1.87 5.19 -17.34 -0.09 1.78 16 18 N -0.79 -19.15 10.94 55.55 0.61 -18.55 16 19 Si 0.91 17.70 29.59 -169.99 -5.03 12.67 16 20 H -0.26 -5.09 7.11 56.52 0.40 -4.69 16 21 H -0.28 -5.23 7.11 56.52 0.40 -4.82 16 22 H -0.26 -5.07 7.11 56.52 0.40 -4.67 16 23 C -0.28 -7.02 9.90 -38.71 -0.38 -7.40 16 24 C 0.12 2.88 11.15 -17.68 -0.20 2.68 16 25 N -0.56 -14.26 7.85 -12.52 -0.10 -14.36 16 26 C -0.15 -1.69 5.29 -26.59 -0.14 -1.83 16 27 C 0.07 0.63 6.84 37.20 0.25 0.89 16 28 O -0.38 -4.33 9.94 -35.23 -0.35 -4.68 16 29 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.07 0.64 7.83 -51.93 -0.41 0.23 16 34 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.08 1.19 8.02 -51.93 -0.42 0.77 16 37 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.41 6.49 8.08 -40.82 -0.33 6.16 16 39 H 0.13 3.15 6.20 -52.49 -0.33 2.83 16 40 H 0.28 6.21 8.29 -40.82 -0.34 5.87 16 41 H 0.10 2.30 8.06 -52.48 -0.42 1.88 16 42 H 0.12 2.60 8.06 -52.48 -0.42 2.18 16 43 H 0.08 0.80 7.59 -51.93 -0.39 0.41 16 44 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 45 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 46 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 373.13 15.07 5.62 5.62 Total: -1.00 -31.10 373.13 -9.96 -41.07 By element: Atomic # 1 Polarization: 17.83 SS G_CDS: -7.34 Total: 10.49 kcal Atomic # 6 Polarization: -5.16 SS G_CDS: -3.39 Total: -8.55 kcal Atomic # 7 Polarization: -46.19 SS G_CDS: 0.45 Total: -45.74 kcal Atomic # 8 Polarization: -15.29 SS G_CDS: -0.27 Total: -15.56 kcal Atomic # 14 Polarization: 17.70 SS G_CDS: -5.03 Total: 12.67 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -31.10 -9.96 -41.07 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000540941082.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.617 kcal (2) G-P(sol) polarization free energy of solvation -31.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds