Wall clock time and date at job start Tue Mar 31 2020 12:15:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.46829 * 2 1 4 4 C 1.53005 * 109.47037 * 180.02562 * 3 2 1 5 5 H 1.08998 * 109.48541 * 54.97075 * 4 3 2 6 6 C 1.53090 * 109.47701 * 175.00113 * 4 3 2 7 7 C 1.53186 * 109.15897 * 177.59149 * 6 4 3 8 8 H 1.08997 * 109.54384 * 62.97375 * 7 6 4 9 9 C 1.50703 * 109.53961 * 183.15245 * 7 6 4 10 10 O 1.21270 * 120.00166 * 359.97438 * 9 7 6 11 11 N 1.34776 * 119.99646 * 179.97438 * 9 7 6 12 12 C 1.39470 * 119.99976 * 175.20141 * 11 9 7 13 13 C 1.38596 * 119.57883 * 185.03223 * 12 11 9 14 14 C 1.40810 * 118.79405 * 180.24890 * 13 12 11 15 15 C 1.41536 * 120.99756 * 179.79787 * 14 13 12 16 16 H 1.08002 * 120.00317 * 155.94760 * 15 14 13 17 17 C 1.40039 * 120.00294 * 336.22225 * 15 14 13 18 18 N 1.30743 * 119.99579 * 342.87374 * 17 15 14 19 19 Si 1.86793 * 120.00139 * 162.86753 * 17 15 14 20 20 H 1.48499 * 109.46960 * 60.00683 * 19 17 15 21 21 H 1.48501 * 109.47232 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47677 * 300.00668 * 19 17 15 23 23 C 1.41180 * 118.00400 * 359.52782 * 14 13 12 24 24 C 1.37578 * 119.01697 * 0.24645 * 23 14 13 25 25 N 1.32088 * 121.11279 * 359.97438 * 24 23 14 26 26 C 1.53181 * 109.03313 * 303.01735 * 7 6 4 27 27 C 1.53090 * 109.16195 * 56.98277 * 26 7 6 28 28 O 1.42899 * 109.47641 * 294.94304 * 4 3 2 29 29 H 1.09005 * 109.47352 * 60.00186 * 1 2 3 30 30 H 1.09002 * 109.46746 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47464 * 299.99787 * 1 2 3 32 32 H 1.09002 * 109.46833 * 240.00599 * 2 1 3 33 33 H 1.08999 * 109.47272 * 120.00258 * 2 1 3 34 34 H 1.08999 * 109.46923 * 59.99882 * 3 2 1 35 35 H 1.09005 * 109.47001 * 300.00029 * 3 2 1 36 36 H 1.08994 * 109.52218 * 57.68568 * 6 4 3 37 37 H 1.08998 * 109.52267 * 297.49020 * 6 4 3 38 38 H 0.97005 * 120.00178 * 355.20877 * 11 9 7 39 39 H 1.07999 * 120.60702 * 0.02680 * 13 12 11 40 40 H 0.96996 * 119.99824 * 179.97438 * 18 17 15 41 41 H 1.08005 * 120.48760 * 180.27585 * 23 14 13 42 42 H 1.08006 * 119.44622 * 180.02562 * 24 23 14 43 43 H 1.09000 * 109.51901 * 176.88669 * 26 7 6 44 44 H 1.09001 * 109.52427 * 297.07343 * 26 7 6 45 45 H 1.09003 * 109.47717 * 182.40560 * 27 26 7 46 46 H 1.09006 * 109.48221 * 62.37444 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5700 1.4426 -0.0006 5 1 3.9332 0.8529 -0.8423 6 6 4.0803 2.8805 -0.1264 7 6 5.6110 2.8778 -0.0658 8 1 6.0085 2.3205 -0.9140 9 6 6.1197 4.2956 -0.1110 10 8 5.3367 5.2187 -0.1850 11 7 7.4449 4.5377 -0.0693 12 6 7.9206 5.8410 -0.2117 13 6 9.2865 6.0679 -0.2726 14 6 9.7487 7.3907 -0.4112 15 6 11.1336 7.6762 -0.4738 16 1 11.4773 8.5813 -0.9525 17 6 12.0585 6.7823 0.0798 18 7 11.6605 5.8744 0.9322 19 14 13.8608 6.8869 -0.3998 20 1 14.3929 8.2247 -0.0359 21 1 14.6262 5.8370 0.3193 22 1 13.9961 6.6820 -1.8643 23 6 8.7891 8.4232 -0.4918 24 6 7.4535 8.0995 -0.4270 25 7 7.0609 6.8456 -0.2921 26 6 6.0580 2.2143 1.2406 27 6 5.4712 0.8023 1.3135 28 8 4.0470 0.8743 1.2206 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 1.6765 1.9563 0.8900 35 1 1.6765 1.9564 -0.8900 36 1 3.6844 3.4805 0.6929 37 1 3.7543 3.3008 -1.0778 38 1 8.0679 3.8054 0.0598 39 1 9.9838 5.2455 -0.2111 40 1 12.3010 5.2549 1.3154 41 1 9.0990 9.4518 -0.6030 42 1 6.7136 8.8839 -0.4884 43 1 7.1462 2.1584 1.2668 44 1 5.7020 2.8010 2.0875 45 1 5.7508 0.3409 2.2606 46 1 5.8594 0.2042 0.4890 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000540941082.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:38 Heat of formation + Delta-G solvation = -90.040645 kcal Electronic energy + Delta-G solvation = -26354.573710 eV Core-core repulsion = 22628.323623 eV Total energy + Delta-G solvation = -3726.250086 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.62807 -40.39647 -39.29034 -36.17224 -35.95719 -35.50061 -34.64867 -32.48017 -32.16522 -30.46399 -28.28233 -27.93479 -26.18874 -23.93903 -23.81372 -23.31046 -22.01298 -21.68043 -20.76763 -19.48521 -18.52983 -17.58124 -17.36981 -17.08185 -16.83235 -16.21558 -16.08490 -15.74810 -15.71512 -15.36954 -15.29565 -14.97766 -14.75911 -14.39056 -14.29590 -14.03422 -13.69098 -13.64151 -13.21148 -13.05055 -12.94094 -12.67126 -12.53079 -12.33193 -12.30759 -12.08673 -11.96231 -11.87025 -11.61818 -11.50269 -11.47159 -11.26145 -11.15181 -10.96144 -10.43401 -9.97768 -9.59746 -8.89991 -8.66228 -6.58241 0.71859 0.98340 1.40500 1.51110 1.55839 1.84960 2.10125 2.19119 2.78491 2.86756 3.46721 3.53739 3.69963 3.77598 3.89636 4.07837 4.10330 4.15011 4.30739 4.31897 4.39737 4.49290 4.60087 4.67085 4.73082 4.77091 4.82196 4.83398 4.83836 4.91121 4.99560 5.04875 5.06320 5.08145 5.11301 5.20192 5.24711 5.31938 5.41624 5.45979 5.52436 5.62585 5.88223 6.12097 6.32966 6.44942 6.58181 6.77329 6.80740 7.28615 7.82013 8.24104 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.024154 B = 0.002581 C = 0.002376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.947900 B =10846.091831 C =11781.189034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.117 4.117 3 C -0.112 4.112 4 C 0.097 3.903 5 H 0.077 0.923 6 C -0.125 4.125 7 C -0.097 4.097 8 H 0.124 0.876 9 C 0.499 3.501 10 O -0.526 6.526 11 N -0.651 5.651 12 C 0.333 3.667 13 C -0.262 4.262 14 C 0.113 3.887 15 C -0.484 4.484 16 H 0.084 0.916 17 C 0.040 3.960 18 N -0.809 5.809 19 Si 0.988 3.012 20 H -0.261 1.261 21 H -0.264 1.264 22 H -0.260 1.260 23 C -0.299 4.299 24 C 0.112 3.888 25 N -0.582 5.582 26 C -0.146 4.146 27 C 0.066 3.934 28 O -0.392 6.392 29 H 0.057 0.943 30 H 0.060 0.940 31 H 0.049 0.951 32 H 0.067 0.933 33 H 0.060 0.940 34 H 0.059 0.941 35 H 0.084 0.916 36 H 0.053 0.947 37 H 0.074 0.926 38 H 0.422 0.578 39 H 0.125 0.875 40 H 0.294 0.706 41 H 0.115 0.885 42 H 0.148 0.852 43 H 0.095 0.905 44 H 0.056 0.944 45 H 0.112 0.888 46 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.129 -15.791 -1.271 18.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.155 4.155 3 C -0.150 4.150 4 C 0.040 3.960 5 H 0.095 0.905 6 C -0.163 4.163 7 C -0.118 4.118 8 H 0.142 0.858 9 C 0.286 3.714 10 O -0.399 6.399 11 N -0.298 5.298 12 C 0.107 3.893 13 C -0.287 4.287 14 C 0.105 3.895 15 C -0.514 4.514 16 H 0.102 0.898 17 C -0.178 4.178 18 N -0.434 5.434 19 Si 0.808 3.192 20 H -0.185 1.185 21 H -0.188 1.188 22 H -0.184 1.184 23 C -0.323 4.323 24 C -0.041 4.041 25 N -0.302 5.302 26 C -0.184 4.184 27 C -0.010 4.010 28 O -0.312 6.312 29 H 0.076 0.924 30 H 0.080 0.920 31 H 0.068 0.932 32 H 0.086 0.914 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.102 0.898 36 H 0.072 0.928 37 H 0.092 0.908 38 H 0.260 0.740 39 H 0.143 0.857 40 H 0.105 0.895 41 H 0.133 0.867 42 H 0.165 0.835 43 H 0.114 0.886 44 H 0.075 0.925 45 H 0.130 0.870 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -10.724 -15.639 -0.978 18.988 hybrid contribution 2.187 0.685 -0.089 2.294 sum -8.537 -14.954 -1.067 17.253 Atomic orbital electron populations 1.21780 0.95389 1.02021 1.01800 1.21438 0.96077 0.95626 1.02330 1.21659 0.92040 0.98438 1.02839 1.22187 0.95250 0.91212 0.87396 0.90505 1.22003 0.92902 0.98373 1.03026 1.21435 0.97681 0.90796 1.01874 0.85787 1.21540 0.81588 0.92606 0.75635 1.90743 1.55561 1.47324 1.46272 1.43518 1.08497 1.06650 1.71117 1.18480 0.89290 0.85570 0.95975 1.21525 0.92111 0.98569 1.16521 1.18012 0.94186 0.91016 0.86310 1.19842 0.90718 1.07074 1.33805 0.89798 1.26834 1.06266 0.92884 0.91772 1.69798 1.39507 1.14759 1.19357 0.85165 0.74990 0.79435 0.79638 1.18477 1.18828 1.18401 1.22071 0.94038 0.99188 1.17026 1.22206 0.94262 0.92417 0.95258 1.67356 1.37961 0.99788 1.25074 1.22235 1.02644 0.98238 0.95273 1.22687 0.80151 0.94036 1.04144 1.87919 1.21899 1.82132 1.39206 0.92432 0.92048 0.93151 0.91405 0.92095 0.92246 0.89776 0.92785 0.90761 0.74047 0.85690 0.89532 0.86668 0.83457 0.88649 0.92539 0.86975 0.90705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 9.91 71.98 0.71 -1.31 16 2 C -0.12 -1.76 5.83 30.60 0.18 -1.58 16 3 C -0.11 -1.99 4.92 30.60 0.15 -1.84 16 4 C 0.10 1.88 2.64 30.63 0.08 1.96 16 5 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 6 C -0.12 -3.12 4.02 30.69 0.12 -3.00 16 7 C -0.10 -2.41 2.62 -11.42 -0.03 -2.44 16 8 H 0.12 2.41 8.14 -2.39 -0.02 2.39 16 9 C 0.50 18.64 7.12 87.66 0.62 19.26 16 10 O -0.53 -24.73 14.22 -3.00 -0.04 -24.77 16 11 N -0.65 -25.33 5.32 -308.67 -1.64 -26.97 16 12 C 0.33 16.44 7.42 132.75 0.98 17.43 16 13 C -0.26 -13.49 8.62 22.98 0.20 -13.29 16 14 C 0.11 6.07 5.60 -21.11 -0.12 5.95 16 15 C -0.48 -24.98 9.12 23.52 0.21 -24.77 16 16 H 0.08 4.14 7.90 -2.91 -0.02 4.12 16 17 C 0.04 1.89 5.19 85.29 0.44 2.34 16 18 N -0.81 -39.05 10.94 21.84 0.24 -38.81 16 19 Si 0.99 35.33 29.59 68.60 2.03 37.36 16 20 H -0.26 -9.14 7.11 99.48 0.71 -8.43 16 21 H -0.26 -8.81 7.11 99.48 0.71 -8.11 16 22 H -0.26 -9.14 7.11 99.48 0.71 -8.43 16 23 C -0.30 -15.08 9.90 22.84 0.23 -14.85 16 24 C 0.11 5.53 11.15 84.50 0.94 6.48 16 25 N -0.58 -30.57 7.85 -193.54 -1.52 -32.09 16 26 C -0.15 -3.06 5.29 30.68 0.16 -2.90 16 27 C 0.07 1.09 6.84 72.01 0.49 1.58 16 28 O -0.39 -8.23 9.94 -148.98 -1.48 -9.71 16 29 H 0.06 0.71 8.14 -2.38 -0.02 0.69 16 30 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.07 0.89 8.14 -2.39 -0.02 0.88 16 33 H 0.06 1.02 7.83 -2.39 -0.02 1.01 16 34 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.08 1.35 8.14 -2.38 -0.02 1.33 16 36 H 0.05 1.64 8.02 -2.39 -0.02 1.62 16 37 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 38 H 0.42 13.19 8.08 -92.70 -0.75 12.44 16 39 H 0.13 6.33 6.20 -2.91 -0.02 6.31 16 40 H 0.29 12.60 8.29 -92.71 -0.77 11.83 16 41 H 0.12 5.30 8.06 -2.91 -0.02 5.27 16 42 H 0.15 6.29 8.06 -2.91 -0.02 6.27 16 43 H 0.10 1.70 7.59 -2.39 -0.02 1.68 16 44 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 45 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 46 H 0.07 0.92 8.14 -2.38 -0.02 0.90 16 Total: -1.00 -68.84 373.13 3.20 -65.65 By element: Atomic # 1 Polarization: 40.09 SS G_CDS: 0.23 Total: 40.32 kcal Atomic # 6 Polarization: -16.37 SS G_CDS: 5.39 Total: -10.98 kcal Atomic # 7 Polarization: -94.95 SS G_CDS: -2.92 Total: -97.87 kcal Atomic # 8 Polarization: -32.95 SS G_CDS: -1.52 Total: -34.48 kcal Atomic # 14 Polarization: 35.33 SS G_CDS: 2.03 Total: 37.36 kcal Total: -68.84 3.20 -65.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000540941082.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.391 kcal (2) G-P(sol) polarization free energy of solvation -68.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds