Wall clock time and date at job start Tue Mar 31 2020 12:15:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52995 * 109.47591 * 2 1 4 4 C 1.53004 * 109.47557 * 180.02562 * 3 2 1 5 5 H 1.09003 * 109.47590 * 55.01953 * 4 3 2 6 6 C 1.53087 * 109.49136 * 175.04974 * 4 3 2 7 7 C 1.53174 * 109.16264 * 177.59658 * 6 4 3 8 8 H 1.09003 * 109.61421 * 183.11253 * 7 6 4 9 9 C 1.50699 * 109.54317 * 62.89219 * 7 6 4 10 10 O 1.21277 * 119.99904 * 0.43887 * 9 7 6 11 11 N 1.34776 * 120.00293 * 180.44406 * 9 7 6 12 12 C 1.39469 * 120.00110 * 174.90633 * 11 9 7 13 13 C 1.38596 * 119.57809 * 174.64788 * 12 11 9 14 14 C 1.40809 * 118.79531 * 180.02562 * 13 12 11 15 15 C 1.41546 * 120.99527 * 180.02562 * 14 13 12 16 16 H 1.08000 * 120.00091 * 26.12405 * 15 14 13 17 17 C 1.40029 * 119.99691 * 206.12179 * 15 14 13 18 18 N 1.30737 * 120.00304 * 9.71748 * 17 15 14 19 19 Si 1.86806 * 119.99996 * 189.72438 * 17 15 14 20 20 H 1.48507 * 109.46995 * 59.99784 * 19 17 15 21 21 H 1.48502 * 109.47362 * 179.97438 * 19 17 15 22 22 H 1.48506 * 109.46955 * 300.00226 * 19 17 15 23 23 C 1.41173 * 118.00670 * 359.75503 * 14 13 12 24 24 C 1.37590 * 119.01521 * 0.50561 * 23 14 13 25 25 N 1.32085 * 121.10635 * 359.47706 * 24 23 14 26 26 C 1.53176 * 109.03761 * 303.02182 * 7 6 4 27 27 C 1.53091 * 109.16169 * 56.98030 * 26 7 6 28 28 O 1.42901 * 109.47654 * 295.00480 * 4 3 2 29 29 H 1.08999 * 109.47414 * 59.99580 * 1 2 3 30 30 H 1.08999 * 109.47267 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46919 * 299.99815 * 1 2 3 32 32 H 1.09009 * 109.47201 * 239.99486 * 2 1 3 33 33 H 1.09008 * 109.47259 * 120.00554 * 2 1 3 34 34 H 1.08998 * 109.46838 * 60.00136 * 3 2 1 35 35 H 1.08999 * 109.47084 * 300.00622 * 3 2 1 36 36 H 1.09008 * 109.52015 * 57.69340 * 6 4 3 37 37 H 1.08999 * 109.52394 * 297.50475 * 6 4 3 38 38 H 0.97004 * 119.99816 * 354.90630 * 11 9 7 39 39 H 1.08000 * 120.60493 * 0.02562 * 13 12 11 40 40 H 0.97005 * 120.00649 * 179.97438 * 18 17 15 41 41 H 1.08007 * 120.49338 * 180.27029 * 23 14 13 42 42 H 1.07997 * 119.44579 * 179.76097 * 24 23 14 43 43 H 1.09004 * 109.52010 * 176.88460 * 26 7 6 44 44 H 1.09004 * 109.52000 * 297.07356 * 26 7 6 45 45 H 1.09001 * 109.48279 * 62.37597 * 27 26 7 46 46 H 1.08998 * 109.47827 * 182.40713 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5701 1.4424 -0.0006 5 1 3.9331 0.8534 -0.8429 6 6 4.0808 2.8802 -0.1252 7 6 5.6114 2.8771 -0.0647 8 1 5.9809 3.9020 -0.0971 9 6 6.1607 2.1057 -1.2370 10 8 5.4042 1.6136 -2.0471 11 7 7.4926 1.9627 -1.3851 12 6 7.9984 1.1611 -2.4083 13 6 9.3666 1.1081 -2.6229 14 6 9.8593 0.2939 -3.6607 15 6 11.2478 0.2046 -3.9205 16 1 11.9583 0.3887 -3.1282 17 6 11.7002 -0.1224 -5.2047 18 7 10.8588 -0.1588 -6.2047 19 14 13.5060 -0.5068 -5.4891 20 1 13.8996 -1.6755 -4.6616 21 1 13.7254 -0.8205 -6.9240 22 1 14.3285 0.6693 -5.1076 23 6 8.9272 -0.4352 -4.4306 24 6 7.5866 -0.3142 -4.1459 25 7 7.1649 0.4609 -3.1630 26 6 6.0584 2.2123 1.2409 27 6 5.4713 0.8003 1.3126 28 8 4.0470 0.8727 1.2200 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5140 -0.8900 33 1 1.8933 -0.5140 0.8900 34 1 1.6767 1.9562 0.8900 35 1 1.6767 1.9563 -0.8899 36 1 3.6851 3.4796 0.6948 37 1 3.7547 3.3015 -1.0761 38 1 8.0995 2.4173 -0.7801 39 1 10.0426 1.6808 -2.0054 40 1 11.1722 -0.3850 -7.0944 41 1 9.2614 -1.0755 -5.2337 42 1 6.8673 -0.8658 -4.7330 43 1 7.1467 2.1561 1.2670 44 1 5.7026 2.7983 2.0884 45 1 5.8593 0.2029 0.4876 46 1 5.7509 0.3380 2.2593 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000540941084.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:41 Heat of formation + Delta-G solvation = -85.459449 kcal Electronic energy + Delta-G solvation = -26941.727517 eV Core-core repulsion = 23215.676086 eV Total energy + Delta-G solvation = -3726.051431 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.86730 -40.36529 -39.00922 -36.29181 -35.99202 -35.32820 -34.58656 -32.61011 -32.14494 -30.36361 -28.25727 -27.93827 -26.00357 -24.13241 -23.68988 -23.53377 -22.22303 -21.92651 -20.40967 -19.67240 -17.84512 -17.72827 -17.44070 -17.19765 -16.85802 -16.28711 -16.04218 -15.89002 -15.68537 -15.42899 -15.25789 -14.84442 -14.70084 -14.36479 -14.19848 -13.91679 -13.63362 -13.41375 -13.29138 -13.14261 -12.88162 -12.86815 -12.79643 -12.44185 -12.25469 -12.10017 -11.88064 -11.86964 -11.63254 -11.54009 -11.52105 -11.26770 -11.15765 -10.78393 -10.26086 -9.98512 -9.59920 -8.88209 -8.60810 -6.60840 0.73753 0.95400 1.39605 1.52135 1.54526 1.88837 2.11822 2.19993 2.81270 2.85768 3.48683 3.63018 3.72012 3.79484 3.88385 4.00094 4.14940 4.17438 4.27462 4.35010 4.44304 4.52370 4.68215 4.71471 4.73726 4.79657 4.82195 4.84822 4.87840 4.91707 4.96483 5.01947 5.02236 5.06420 5.10201 5.21213 5.23544 5.30030 5.38235 5.45126 5.47475 5.64224 5.94600 6.11550 6.31204 6.43240 6.61533 6.77890 6.81209 7.32151 7.82333 8.26940 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.024306 B = 0.002790 C = 0.002630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.687124 B =10034.818124 C =10645.594232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.124 4.124 3 C -0.102 4.102 4 C 0.076 3.924 5 H 0.044 0.956 6 C -0.123 4.123 7 C -0.104 4.104 8 H 0.134 0.866 9 C 0.496 3.504 10 O -0.519 6.519 11 N -0.651 5.651 12 C 0.348 3.652 13 C -0.312 4.312 14 C 0.116 3.884 15 C -0.482 4.482 16 H 0.088 0.912 17 C 0.033 3.967 18 N -0.821 5.821 19 Si 0.993 3.007 20 H -0.258 1.258 21 H -0.269 1.269 22 H -0.256 1.256 23 C -0.242 4.242 24 C 0.095 3.905 25 N -0.576 5.576 26 C -0.137 4.137 27 C 0.053 3.947 28 O -0.387 6.387 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.064 0.936 32 H 0.039 0.961 33 H 0.058 0.942 34 H 0.082 0.918 35 H 0.078 0.922 36 H 0.105 0.895 37 H 0.070 0.930 38 H 0.424 0.576 39 H 0.124 0.876 40 H 0.291 0.709 41 H 0.120 0.880 42 H 0.136 0.864 43 H 0.093 0.907 44 H 0.113 0.887 45 H 0.013 0.987 46 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.983 6.098 14.152 17.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.161 4.161 3 C -0.140 4.140 4 C 0.019 3.981 5 H 0.062 0.938 6 C -0.161 4.161 7 C -0.125 4.125 8 H 0.151 0.849 9 C 0.283 3.717 10 O -0.392 6.392 11 N -0.299 5.299 12 C 0.119 3.881 13 C -0.338 4.338 14 C 0.108 3.892 15 C -0.513 4.513 16 H 0.106 0.894 17 C -0.183 4.183 18 N -0.447 5.447 19 Si 0.812 3.188 20 H -0.182 1.182 21 H -0.194 1.194 22 H -0.180 1.180 23 C -0.266 4.266 24 C -0.056 4.056 25 N -0.296 5.296 26 C -0.174 4.174 27 C -0.023 4.023 28 O -0.307 6.307 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.083 0.917 32 H 0.058 0.942 33 H 0.077 0.923 34 H 0.101 0.899 35 H 0.096 0.904 36 H 0.123 0.877 37 H 0.088 0.912 38 H 0.263 0.737 39 H 0.141 0.859 40 H 0.102 0.898 41 H 0.137 0.863 42 H 0.153 0.847 43 H 0.112 0.888 44 H 0.131 0.869 45 H 0.031 0.969 46 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -10.664 5.721 13.672 18.258 hybrid contribution 2.220 -0.264 -0.991 2.445 sum -8.444 5.457 12.681 16.183 Atomic orbital electron populations 1.21736 0.94296 1.02007 1.02280 1.21456 0.96895 0.96690 1.01079 1.21580 0.91646 0.97627 1.03120 1.22359 0.95503 0.93758 0.86474 0.93847 1.21978 0.92900 0.97524 1.03719 1.21555 0.97466 1.01494 0.92032 0.84869 1.21631 0.81656 0.80788 0.87626 1.90730 1.57360 1.46779 1.44330 1.43515 1.08245 1.47387 1.30734 1.18302 0.88873 0.91389 0.89532 1.21436 0.92963 1.10608 1.08786 1.18017 0.94481 0.87332 0.89364 1.19871 0.91871 1.42813 0.96717 0.89392 1.26922 1.05271 0.91305 0.94836 1.69810 1.39040 1.34098 1.01765 0.85091 0.75469 0.79978 0.78219 1.18229 1.19366 1.18010 1.22273 0.93289 1.05497 1.05502 1.22156 0.94125 0.95537 0.93810 1.67297 1.38359 1.13837 1.10097 1.22202 1.02396 0.96402 0.96449 1.22653 0.81127 0.96799 1.01766 1.87841 1.21081 1.82918 1.38856 0.92477 0.92501 0.91693 0.94185 0.92344 0.89920 0.90364 0.87681 0.91152 0.73729 0.85855 0.89813 0.86260 0.84668 0.88803 0.86880 0.96878 0.86699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.61 9.91 71.98 0.71 -1.90 16 2 C -0.12 -2.90 5.83 30.59 0.18 -2.72 16 3 C -0.10 -2.31 4.92 30.59 0.15 -2.16 16 4 C 0.08 2.10 2.35 30.62 0.07 2.17 16 5 H 0.04 1.61 5.82 -2.39 -0.01 1.60 16 6 C -0.12 -2.77 4.56 30.68 0.14 -2.63 16 7 C -0.10 -2.29 3.04 -11.42 -0.03 -2.33 16 8 H 0.13 2.08 8.14 -2.39 -0.02 2.06 16 9 C 0.50 16.96 5.77 87.66 0.51 17.46 16 10 O -0.52 -22.91 12.14 -3.02 -0.04 -22.95 16 11 N -0.65 -22.77 5.22 -308.67 -1.61 -24.38 16 12 C 0.35 16.20 7.40 132.75 0.98 17.18 16 13 C -0.31 -14.94 9.73 22.98 0.22 -14.71 16 14 C 0.12 6.23 5.60 -21.11 -0.12 6.11 16 15 C -0.48 -24.84 9.13 23.52 0.21 -24.62 16 16 H 0.09 4.23 7.87 -2.91 -0.02 4.21 16 17 C 0.03 1.59 5.31 85.29 0.45 2.04 16 18 N -0.82 -41.92 10.70 21.84 0.23 -41.69 16 19 Si 0.99 36.26 29.57 68.60 2.03 38.29 16 20 H -0.26 -9.17 7.11 99.48 0.71 -8.47 16 21 H -0.27 -9.41 7.11 99.48 0.71 -8.70 16 22 H -0.26 -8.96 7.11 99.48 0.71 -8.25 16 23 C -0.24 -13.08 8.77 22.84 0.20 -12.88 16 24 C 0.09 4.92 11.15 84.50 0.94 5.86 16 25 N -0.58 -29.92 7.89 -193.54 -1.53 -31.44 16 26 C -0.14 -2.43 5.57 30.68 0.17 -2.26 16 27 C 0.05 1.29 6.62 72.01 0.48 1.77 16 28 O -0.39 -10.51 9.94 -148.98 -1.48 -11.99 16 29 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.04 1.08 8.14 -2.38 -0.02 1.06 16 33 H 0.06 1.45 7.82 -2.38 -0.02 1.43 16 34 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.10 1.74 8.14 -2.38 -0.02 1.72 16 37 H 0.07 1.73 8.02 -2.39 -0.02 1.71 16 38 H 0.42 10.93 8.25 -92.71 -0.77 10.16 16 39 H 0.12 5.15 8.06 -2.91 -0.02 5.13 16 40 H 0.29 13.42 8.29 -92.70 -0.77 12.65 16 41 H 0.12 6.61 6.12 -2.91 -0.02 6.59 16 42 H 0.14 6.39 8.06 -2.91 -0.02 6.37 16 43 H 0.09 1.39 7.62 -2.38 -0.02 1.37 16 44 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 45 H 0.01 0.41 7.38 -2.39 -0.02 0.40 16 46 H 0.12 2.23 8.14 -2.39 -0.02 2.21 16 Total: -1.00 -70.16 367.19 3.10 -67.07 By element: Atomic # 1 Polarization: 40.50 SS G_CDS: 0.22 Total: 40.72 kcal Atomic # 6 Polarization: -18.89 SS G_CDS: 5.27 Total: -13.62 kcal Atomic # 7 Polarization: -94.61 SS G_CDS: -2.90 Total: -97.51 kcal Atomic # 8 Polarization: -33.42 SS G_CDS: -1.52 Total: -34.94 kcal Atomic # 14 Polarization: 36.26 SS G_CDS: 2.03 Total: 38.29 kcal Total: -70.16 3.10 -67.07 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000540941084.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.391 kcal (2) G-P(sol) polarization free energy of solvation -70.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds