Wall clock time and date at job start Tue Mar 31 2020 12:15:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53009 * 109.47049 * 2 1 4 4 C 1.52996 * 109.47049 * 179.97438 * 3 2 1 5 5 H 1.09004 * 109.48959 * 305.03036 * 4 3 2 6 6 C 1.53088 * 109.48190 * 185.00175 * 4 3 2 7 7 C 1.53175 * 109.16724 * 182.41065 * 6 4 3 8 8 H 1.09005 * 109.54079 * 297.02307 * 7 6 4 9 9 C 1.50700 * 109.54528 * 176.84916 * 7 6 4 10 10 O 1.21270 * 119.99882 * 359.97438 * 9 7 6 11 11 N 1.34779 * 119.99854 * 180.02562 * 9 7 6 12 12 C 1.39467 * 120.00134 * 175.90259 * 11 9 7 13 13 C 1.38589 * 119.58453 * 186.20077 * 12 11 9 14 14 C 1.40812 * 118.79960 * 179.73997 * 13 12 11 15 15 C 1.41544 * 120.99962 * 180.23526 * 14 13 12 16 16 H 1.07997 * 120.00225 * 201.22238 * 15 14 13 17 17 C 1.40034 * 119.99560 * 21.22679 * 15 14 13 18 18 N 1.30735 * 120.00420 * 13.77745 * 17 15 14 19 19 Si 1.86805 * 119.99318 * 193.77663 * 17 15 14 20 20 H 1.48494 * 109.47199 * 60.00142 * 19 17 15 21 21 H 1.48508 * 109.46593 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.47303 * 299.99759 * 19 17 15 23 23 C 1.41177 * 118.00248 * 0.51954 * 14 13 12 24 24 C 1.37590 * 119.01839 * 359.73709 * 23 14 13 25 25 N 1.32079 * 121.10749 * 0.02562 * 24 23 14 26 26 C 1.53175 * 109.03589 * 56.97747 * 7 6 4 27 27 C 1.53088 * 109.16527 * 303.01922 * 26 7 6 28 28 O 1.42904 * 109.47929 * 65.05874 * 4 3 2 29 29 H 1.09000 * 109.47390 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47060 * 300.00292 * 1 2 3 31 31 H 1.08998 * 109.47017 * 59.99674 * 1 2 3 32 32 H 1.09003 * 109.47273 * 240.00620 * 2 1 3 33 33 H 1.08999 * 109.47453 * 120.00023 * 2 1 3 34 34 H 1.09003 * 109.46577 * 60.00194 * 3 2 1 35 35 H 1.08999 * 109.47011 * 300.00293 * 3 2 1 36 36 H 1.09000 * 109.52184 * 62.49889 * 6 4 3 37 37 H 1.09005 * 109.57246 * 302.34765 * 6 4 3 38 38 H 0.96998 * 120.00200 * 355.62008 * 11 9 7 39 39 H 1.08001 * 120.60205 * 359.97438 * 13 12 11 40 40 H 0.97003 * 119.99967 * 180.02562 * 18 17 15 41 41 H 1.08000 * 120.48745 * 179.72090 * 23 14 13 42 42 H 1.07997 * 119.44444 * 180.02562 * 24 23 14 43 43 H 1.08993 * 109.52380 * 62.93148 * 26 7 6 44 44 H 1.09006 * 109.51927 * 183.11593 * 26 7 6 45 45 H 1.08998 * 109.48457 * 297.63162 * 27 26 7 46 46 H 1.08999 * 109.48216 * 177.59114 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5699 1.4426 0.0006 5 1 3.9333 0.8529 0.8423 6 6 4.0804 2.8803 0.1265 7 6 5.6110 2.8777 0.0658 8 1 6.0085 2.3203 0.9140 9 6 6.1198 4.2955 0.1111 10 8 5.3368 5.2186 0.1843 11 7 7.4450 4.5375 0.0694 12 6 7.9131 5.8505 0.0250 13 6 9.2674 6.0886 -0.1477 14 6 9.7212 7.4208 -0.1956 15 6 11.0935 7.7174 -0.3752 16 1 11.4816 8.6799 -0.0763 17 6 11.9479 6.7628 -0.9406 18 7 11.4499 5.7162 -1.5453 19 14 13.7995 6.9851 -0.8308 20 1 14.2085 7.0325 0.5959 21 1 14.4754 5.8454 -1.5015 22 1 14.1863 8.2535 -1.4991 23 6 8.7672 8.4516 -0.0530 24 6 7.4439 8.1169 0.1200 25 7 7.0582 6.8542 0.1545 26 6 6.0580 2.2143 -1.2405 27 6 5.4713 0.8022 -1.3135 28 8 4.0470 0.8743 -1.2207 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8899 32 1 1.8933 -0.5137 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.6766 1.9563 0.8900 35 1 1.6766 1.9564 -0.8900 36 1 3.7543 3.3007 1.0778 37 1 3.6845 3.4814 -0.6922 38 1 8.0734 3.7985 0.0743 39 1 9.9617 5.2674 -0.2476 40 1 12.0418 5.0548 -1.9367 41 1 9.0717 9.4874 -0.0790 42 1 6.7082 8.9000 0.2294 43 1 5.7021 2.8009 -2.0873 44 1 7.1464 2.1583 -1.2667 45 1 5.8594 0.2041 -0.4890 46 1 5.7509 0.3409 -2.2606 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000540941086.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:48 Heat of formation + Delta-G solvation = -72.075718 kcal Electronic energy + Delta-G solvation = -26388.033816 eV Core-core repulsion = 22662.562747 eV Total energy + Delta-G solvation = -3725.471069 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.28291 -39.01977 -37.68100 -35.19855 -34.38742 -33.82520 -33.49803 -31.35394 -30.54094 -28.69119 -27.41465 -26.04502 -25.09101 -22.96754 -22.07944 -21.82576 -21.11358 -20.42836 -19.38551 -17.69793 -17.07261 -16.62736 -15.85823 -15.78987 -15.24615 -15.01283 -14.88836 -14.58671 -14.20842 -14.16209 -13.88388 -13.57429 -13.47133 -12.96063 -12.89101 -12.72676 -12.61423 -12.37527 -12.13019 -11.72186 -11.48742 -11.46332 -11.33286 -11.21606 -11.11876 -10.92535 -10.79509 -10.69721 -10.37815 -10.31894 -10.15018 -9.76712 -9.73348 -9.40334 -9.20493 -8.02896 -7.74467 -7.03584 -6.80338 -4.65745 2.54196 2.77639 2.97549 3.00524 3.18857 3.42915 3.58774 3.69114 3.80942 4.46254 4.63476 4.68763 4.73523 4.81395 4.86256 4.93829 5.05423 5.10064 5.26768 5.33081 5.46022 5.48995 5.52485 5.56551 5.67664 5.67927 5.71797 5.78784 5.87355 5.95121 6.04626 6.06874 6.09617 6.18261 6.30303 6.57226 6.64890 6.79363 6.92037 7.11817 7.14208 7.38315 7.45293 7.76109 7.93201 8.19563 8.40970 8.68040 8.72247 8.89250 9.68657 10.02479 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.024133 B = 0.002609 C = 0.002389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.976654 B =10727.481992 C =11719.052949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.122 4.122 3 C -0.112 4.112 4 C 0.091 3.909 5 H 0.057 0.943 6 C -0.128 4.128 7 C -0.108 4.108 8 H 0.093 0.907 9 C 0.503 3.497 10 O -0.480 6.480 11 N -0.657 5.657 12 C 0.335 3.665 13 C -0.247 4.247 14 C 0.139 3.861 15 C -0.450 4.450 16 H 0.081 0.919 17 C 0.075 3.925 18 N -0.789 5.789 19 Si 0.915 3.085 20 H -0.263 1.263 21 H -0.277 1.277 22 H -0.264 1.264 23 C -0.286 4.286 24 C 0.118 3.882 25 N -0.555 5.555 26 C -0.148 4.148 27 C 0.066 3.934 28 O -0.378 6.378 29 H 0.052 0.948 30 H 0.052 0.948 31 H 0.054 0.946 32 H 0.069 0.931 33 H 0.058 0.942 34 H 0.076 0.924 35 H 0.072 0.928 36 H 0.079 0.921 37 H 0.081 0.919 38 H 0.406 0.594 39 H 0.137 0.863 40 H 0.282 0.718 41 H 0.101 0.899 42 H 0.123 0.877 43 H 0.078 0.922 44 H 0.080 0.920 45 H 0.050 0.950 46 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.726 -13.479 1.873 16.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.159 4.159 3 C -0.149 4.149 4 C 0.034 3.966 5 H 0.075 0.925 6 C -0.166 4.166 7 C -0.130 4.130 8 H 0.111 0.889 9 C 0.287 3.713 10 O -0.350 6.350 11 N -0.303 5.303 12 C 0.110 3.890 13 C -0.272 4.272 14 C 0.131 3.869 15 C -0.481 4.481 16 H 0.099 0.901 17 C -0.143 4.143 18 N -0.415 5.415 19 Si 0.739 3.261 20 H -0.187 1.187 21 H -0.202 1.202 22 H -0.188 1.188 23 C -0.309 4.309 24 C -0.036 4.036 25 N -0.275 5.275 26 C -0.186 4.186 27 C -0.011 4.011 28 O -0.297 6.297 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.087 0.913 33 H 0.076 0.924 34 H 0.095 0.905 35 H 0.091 0.909 36 H 0.098 0.902 37 H 0.100 0.900 38 H 0.241 0.759 39 H 0.154 0.846 40 H 0.093 0.907 41 H 0.120 0.880 42 H 0.140 0.860 43 H 0.097 0.903 44 H 0.099 0.901 45 H 0.069 0.931 46 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -11.319 -13.318 1.750 17.566 hybrid contribution 2.494 0.062 0.021 2.495 sum -8.825 -13.256 1.771 16.023 Atomic orbital electron populations 1.21781 0.96049 1.01418 1.01772 1.21484 0.95499 0.96640 1.02320 1.21638 0.92623 0.97588 1.03073 1.22171 0.94678 0.92857 0.86935 0.92516 1.22022 0.93219 0.96952 1.04406 1.21397 0.97556 0.94487 0.99582 0.88925 1.20514 0.82560 0.90686 0.77527 1.90769 1.54697 1.45213 1.44314 1.43455 1.07337 1.06816 1.72691 1.18236 0.89754 0.83840 0.97135 1.21754 0.92421 0.99193 1.13861 1.17587 0.93003 0.90320 0.86027 1.19580 0.92417 1.00776 1.35367 0.90053 1.25985 1.01856 0.94109 0.92371 1.69739 1.37776 1.09373 1.24621 0.86261 0.81201 0.78969 0.79705 1.18727 1.20216 1.18848 1.21876 0.94060 0.98688 1.16321 1.21751 0.93721 0.91892 0.96280 1.67216 1.37204 0.98925 1.24124 1.22204 1.01681 0.97338 0.97405 1.22539 0.81110 0.95300 1.02167 1.87921 1.20777 1.82317 1.38705 0.92933 0.92875 0.92717 0.91250 0.92368 0.90523 0.90922 0.90250 0.90049 0.75923 0.84590 0.90698 0.88045 0.85953 0.90291 0.90124 0.93124 0.88597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.91 37.16 0.37 -0.76 16 2 C -0.12 -1.03 5.83 -26.73 -0.16 -1.18 16 3 C -0.11 -1.06 4.92 -26.73 -0.13 -1.19 16 4 C 0.09 0.97 2.64 -26.69 -0.07 0.90 16 5 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 6 C -0.13 -1.64 4.02 -26.60 -0.11 -1.75 16 7 C -0.11 -1.43 2.61 -91.59 -0.24 -1.67 16 8 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 9 C 0.50 9.39 7.12 -10.98 -0.08 9.31 16 10 O -0.48 -11.03 14.22 5.57 0.08 -10.95 16 11 N -0.66 -12.79 5.28 -11.49 -0.06 -12.85 16 12 C 0.33 8.14 7.41 -154.70 -1.15 6.99 16 13 C -0.25 -6.25 8.65 -38.48 -0.33 -6.58 16 14 C 0.14 3.65 5.64 -106.55 -0.60 3.05 16 15 C -0.45 -11.50 9.14 -37.65 -0.34 -11.84 16 16 H 0.08 1.98 7.88 -52.49 -0.41 1.57 16 17 C 0.08 1.80 5.28 -17.35 -0.09 1.71 16 18 N -0.79 -19.11 10.59 55.55 0.59 -18.52 16 19 Si 0.91 17.70 29.58 -169.99 -5.03 12.67 16 20 H -0.26 -5.05 7.11 56.52 0.40 -4.65 16 21 H -0.28 -5.21 7.11 56.52 0.40 -4.80 16 22 H -0.26 -5.09 7.11 56.52 0.40 -4.68 16 23 C -0.29 -7.05 9.90 -38.70 -0.38 -7.43 16 24 C 0.12 2.86 11.15 -17.68 -0.20 2.66 16 25 N -0.56 -14.30 7.86 -12.52 -0.10 -14.40 16 26 C -0.15 -1.73 5.31 -26.60 -0.14 -1.87 16 27 C 0.07 0.65 6.84 37.20 0.25 0.90 16 28 O -0.38 -4.40 9.94 -35.23 -0.35 -4.75 16 29 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.07 0.64 7.83 -51.93 -0.41 0.24 16 33 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.08 1.21 8.02 -51.93 -0.42 0.79 16 38 H 0.41 6.47 8.35 -40.82 -0.34 6.13 16 39 H 0.14 3.40 5.88 -52.49 -0.31 3.09 16 40 H 0.28 6.17 8.29 -40.82 -0.34 5.83 16 41 H 0.10 2.29 8.06 -52.49 -0.42 1.87 16 42 H 0.12 2.60 8.06 -52.49 -0.42 2.18 16 43 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 44 H 0.08 0.85 7.81 -51.93 -0.41 0.45 16 45 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 46 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 373.07 15.07 5.62 5.62 Total: -1.00 -31.10 373.07 -9.99 -41.09 By element: Atomic # 1 Polarization: 18.18 SS G_CDS: -7.35 Total: 10.83 kcal Atomic # 6 Polarization: -5.35 SS G_CDS: -3.40 Total: -8.74 kcal Atomic # 7 Polarization: -46.20 SS G_CDS: 0.43 Total: -45.77 kcal Atomic # 8 Polarization: -15.43 SS G_CDS: -0.27 Total: -15.70 kcal Atomic # 14 Polarization: 17.70 SS G_CDS: -5.03 Total: 12.67 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -31.10 -9.99 -41.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000540941086.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.984 kcal (2) G-P(sol) polarization free energy of solvation -31.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds