Wall clock time and date at job start Tue Mar 31 2020 12:15:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53009 * 109.47049 * 2 1 4 4 C 1.52996 * 109.47049 * 179.97438 * 3 2 1 5 5 H 1.09004 * 109.48959 * 305.03036 * 4 3 2 6 6 C 1.53088 * 109.48190 * 185.00175 * 4 3 2 7 7 C 1.53175 * 109.16724 * 182.41065 * 6 4 3 8 8 H 1.09005 * 109.54079 * 297.02307 * 7 6 4 9 9 C 1.50700 * 109.54528 * 176.84916 * 7 6 4 10 10 O 1.21270 * 119.99882 * 359.97438 * 9 7 6 11 11 N 1.34779 * 119.99854 * 180.02562 * 9 7 6 12 12 C 1.39467 * 120.00134 * 175.90259 * 11 9 7 13 13 C 1.38589 * 119.58453 * 186.20077 * 12 11 9 14 14 C 1.40812 * 118.79960 * 179.73997 * 13 12 11 15 15 C 1.41544 * 120.99962 * 180.23526 * 14 13 12 16 16 H 1.07997 * 120.00225 * 201.22238 * 15 14 13 17 17 C 1.40034 * 119.99560 * 21.22679 * 15 14 13 18 18 N 1.30735 * 120.00420 * 13.77745 * 17 15 14 19 19 Si 1.86805 * 119.99318 * 193.77663 * 17 15 14 20 20 H 1.48494 * 109.47199 * 60.00142 * 19 17 15 21 21 H 1.48508 * 109.46593 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.47303 * 299.99759 * 19 17 15 23 23 C 1.41177 * 118.00248 * 0.51954 * 14 13 12 24 24 C 1.37590 * 119.01839 * 359.73709 * 23 14 13 25 25 N 1.32079 * 121.10749 * 0.02562 * 24 23 14 26 26 C 1.53175 * 109.03589 * 56.97747 * 7 6 4 27 27 C 1.53088 * 109.16527 * 303.01922 * 26 7 6 28 28 O 1.42904 * 109.47929 * 65.05874 * 4 3 2 29 29 H 1.09000 * 109.47390 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47060 * 300.00292 * 1 2 3 31 31 H 1.08998 * 109.47017 * 59.99674 * 1 2 3 32 32 H 1.09003 * 109.47273 * 240.00620 * 2 1 3 33 33 H 1.08999 * 109.47453 * 120.00023 * 2 1 3 34 34 H 1.09003 * 109.46577 * 60.00194 * 3 2 1 35 35 H 1.08999 * 109.47011 * 300.00293 * 3 2 1 36 36 H 1.09000 * 109.52184 * 62.49889 * 6 4 3 37 37 H 1.09005 * 109.57246 * 302.34765 * 6 4 3 38 38 H 0.96998 * 120.00200 * 355.62008 * 11 9 7 39 39 H 1.08001 * 120.60205 * 359.97438 * 13 12 11 40 40 H 0.97003 * 119.99967 * 180.02562 * 18 17 15 41 41 H 1.08000 * 120.48745 * 179.72090 * 23 14 13 42 42 H 1.07997 * 119.44444 * 180.02562 * 24 23 14 43 43 H 1.08993 * 109.52380 * 62.93148 * 26 7 6 44 44 H 1.09006 * 109.51927 * 183.11593 * 26 7 6 45 45 H 1.08998 * 109.48457 * 297.63162 * 27 26 7 46 46 H 1.08999 * 109.48216 * 177.59114 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5699 1.4426 0.0006 5 1 3.9333 0.8529 0.8423 6 6 4.0804 2.8803 0.1265 7 6 5.6110 2.8777 0.0658 8 1 6.0085 2.3203 0.9140 9 6 6.1198 4.2955 0.1111 10 8 5.3368 5.2186 0.1843 11 7 7.4450 4.5375 0.0694 12 6 7.9131 5.8505 0.0250 13 6 9.2674 6.0886 -0.1477 14 6 9.7212 7.4208 -0.1956 15 6 11.0935 7.7174 -0.3752 16 1 11.4816 8.6799 -0.0763 17 6 11.9479 6.7628 -0.9406 18 7 11.4499 5.7162 -1.5453 19 14 13.7995 6.9851 -0.8308 20 1 14.2085 7.0325 0.5959 21 1 14.4754 5.8454 -1.5015 22 1 14.1863 8.2535 -1.4991 23 6 8.7672 8.4516 -0.0530 24 6 7.4439 8.1169 0.1200 25 7 7.0582 6.8542 0.1545 26 6 6.0580 2.2143 -1.2405 27 6 5.4713 0.8022 -1.3135 28 8 4.0470 0.8743 -1.2207 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8899 32 1 1.8933 -0.5137 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.6766 1.9563 0.8900 35 1 1.6766 1.9564 -0.8900 36 1 3.7543 3.3007 1.0778 37 1 3.6845 3.4814 -0.6922 38 1 8.0734 3.7985 0.0743 39 1 9.9617 5.2674 -0.2476 40 1 12.0418 5.0548 -1.9367 41 1 9.0717 9.4874 -0.0790 42 1 6.7082 8.9000 0.2294 43 1 5.7021 2.8009 -2.0873 44 1 7.1464 2.1583 -1.2667 45 1 5.8594 0.2041 -0.4890 46 1 5.7509 0.3409 -2.2606 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000540941086.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:47 Heat of formation + Delta-G solvation = -89.452937 kcal Electronic energy + Delta-G solvation = -26388.787348 eV Core-core repulsion = 22662.562747 eV Total energy + Delta-G solvation = -3726.224601 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.61872 -40.39007 -39.28596 -36.18250 -35.95588 -35.50145 -34.64592 -32.45297 -32.16207 -30.45134 -28.27988 -27.94666 -26.18632 -23.92237 -23.80817 -23.30705 -22.00936 -21.66517 -20.78311 -19.49244 -18.51563 -17.57679 -17.37048 -17.10721 -16.77115 -16.27082 -16.04983 -15.79079 -15.74272 -15.37209 -15.14504 -14.96781 -14.77978 -14.40284 -14.27976 -14.05734 -13.68728 -13.64218 -13.17568 -13.04649 -12.89533 -12.69465 -12.52930 -12.33199 -12.30760 -12.06467 -11.94633 -11.86897 -11.61777 -11.51687 -11.47043 -11.26240 -11.17752 -10.95793 -10.43267 -9.96793 -9.60785 -8.87433 -8.62417 -6.59458 0.72729 0.99249 1.40617 1.51625 1.56197 1.84605 2.11946 2.19047 2.79800 2.86810 3.47711 3.54154 3.71161 3.78561 3.90059 4.08021 4.10432 4.15185 4.30792 4.32060 4.40169 4.49000 4.60350 4.67626 4.73598 4.77141 4.82368 4.83916 4.84601 4.91940 4.99657 5.05629 5.07649 5.08927 5.11487 5.23697 5.24890 5.32060 5.41772 5.47509 5.52538 5.63385 5.90654 6.13124 6.33129 6.45729 6.59549 6.78053 6.81565 7.29691 7.83178 8.24252 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.024133 B = 0.002609 C = 0.002389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.976654 B =10727.481992 C =11719.052949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.117 4.117 3 C -0.112 4.112 4 C 0.097 3.903 5 H 0.078 0.922 6 C -0.125 4.125 7 C -0.096 4.096 8 H 0.126 0.874 9 C 0.499 3.501 10 O -0.527 6.527 11 N -0.650 5.650 12 C 0.331 3.669 13 C -0.264 4.264 14 C 0.108 3.892 15 C -0.479 4.479 16 H 0.084 0.916 17 C 0.037 3.963 18 N -0.810 5.810 19 Si 0.990 3.010 20 H -0.259 1.259 21 H -0.264 1.264 22 H -0.261 1.261 23 C -0.300 4.300 24 C 0.111 3.889 25 N -0.582 5.582 26 C -0.145 4.145 27 C 0.067 3.933 28 O -0.393 6.393 29 H 0.061 0.939 30 H 0.057 0.943 31 H 0.049 0.951 32 H 0.060 0.940 33 H 0.068 0.932 34 H 0.084 0.916 35 H 0.058 0.942 36 H 0.075 0.925 37 H 0.051 0.949 38 H 0.422 0.578 39 H 0.136 0.864 40 H 0.293 0.707 41 H 0.115 0.885 42 H 0.147 0.853 43 H 0.052 0.948 44 H 0.094 0.906 45 H 0.076 0.924 46 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.688 -15.615 2.291 18.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.155 4.155 3 C -0.150 4.150 4 C 0.040 3.960 5 H 0.096 0.904 6 C -0.163 4.163 7 C -0.117 4.117 8 H 0.144 0.856 9 C 0.286 3.714 10 O -0.400 6.400 11 N -0.297 5.297 12 C 0.105 3.895 13 C -0.290 4.290 14 C 0.100 3.900 15 C -0.509 4.509 16 H 0.102 0.898 17 C -0.180 4.180 18 N -0.435 5.435 19 Si 0.810 3.190 20 H -0.184 1.184 21 H -0.188 1.188 22 H -0.185 1.185 23 C -0.324 4.324 24 C -0.043 4.043 25 N -0.302 5.302 26 C -0.183 4.183 27 C -0.010 4.010 28 O -0.312 6.312 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.068 0.932 32 H 0.079 0.921 33 H 0.087 0.913 34 H 0.103 0.897 35 H 0.077 0.923 36 H 0.094 0.906 37 H 0.070 0.930 38 H 0.260 0.740 39 H 0.153 0.847 40 H 0.104 0.896 41 H 0.133 0.867 42 H 0.165 0.835 43 H 0.071 0.929 44 H 0.113 0.887 45 H 0.094 0.906 46 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -10.290 -15.494 2.162 18.725 hybrid contribution 2.145 0.743 -0.149 2.275 sum -8.145 -14.752 2.013 16.971 Atomic orbital electron populations 1.21779 0.95396 1.02022 1.01794 1.21438 0.96071 0.95617 1.02340 1.21660 0.92056 0.98445 1.02825 1.22194 0.95239 0.91208 0.87404 0.90368 1.22002 0.92909 0.98366 1.03028 1.21423 0.97667 0.90822 1.01825 0.85574 1.21544 0.81625 0.92626 0.75607 1.90741 1.55645 1.47367 1.46277 1.43494 1.08338 1.05613 1.72232 1.18513 0.89596 0.85415 0.95986 1.21760 0.92905 0.98983 1.15341 1.18045 0.94021 0.91276 0.86655 1.19880 0.92798 1.01782 1.36470 0.89830 1.26861 1.06516 0.93362 0.91270 1.69764 1.39884 1.09793 1.24051 0.85126 0.74792 0.79270 0.79789 1.18373 1.18792 1.18545 1.22055 0.94170 0.99202 1.16966 1.22188 0.94296 0.92318 0.95483 1.67340 1.37865 0.99691 1.25337 1.22217 1.02612 0.98199 0.95278 1.22683 0.80149 0.93994 1.04137 1.87922 1.21887 1.82136 1.39271 0.92039 0.92395 0.93203 0.92140 0.91337 0.89715 0.92337 0.90628 0.92967 0.74037 0.84699 0.89561 0.86706 0.83531 0.92879 0.88749 0.90556 0.87102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 9.91 71.98 0.71 -1.32 16 2 C -0.12 -1.77 5.83 30.60 0.18 -1.59 16 3 C -0.11 -2.00 4.92 30.60 0.15 -1.85 16 4 C 0.10 1.89 2.64 30.62 0.08 1.97 16 5 H 0.08 1.23 8.14 -2.38 -0.02 1.21 16 6 C -0.12 -3.14 4.02 30.68 0.12 -3.02 16 7 C -0.10 -2.41 2.61 -11.42 -0.03 -2.44 16 8 H 0.13 2.39 8.14 -2.38 -0.02 2.37 16 9 C 0.50 18.73 7.12 87.66 0.62 19.35 16 10 O -0.53 -24.92 14.22 -3.00 -0.04 -24.97 16 11 N -0.65 -25.37 5.28 -308.66 -1.63 -27.00 16 12 C 0.33 16.40 7.41 132.75 0.98 17.39 16 13 C -0.26 -13.67 8.65 22.98 0.20 -13.47 16 14 C 0.11 5.83 5.64 -21.11 -0.12 5.71 16 15 C -0.48 -24.71 9.14 23.52 0.22 -24.50 16 16 H 0.08 4.12 7.88 -2.91 -0.02 4.09 16 17 C 0.04 1.74 5.28 85.29 0.45 2.19 16 18 N -0.81 -38.86 10.59 21.84 0.23 -38.63 16 19 Si 0.99 35.29 29.58 68.60 2.03 37.32 16 20 H -0.26 -9.07 7.11 99.48 0.71 -8.37 16 21 H -0.26 -8.76 7.11 99.48 0.71 -8.06 16 22 H -0.26 -9.15 7.11 99.48 0.71 -8.45 16 23 C -0.30 -15.15 9.90 22.84 0.23 -14.92 16 24 C 0.11 5.49 11.15 84.50 0.94 6.43 16 25 N -0.58 -30.72 7.86 -193.54 -1.52 -32.24 16 26 C -0.14 -3.17 5.31 30.68 0.16 -3.00 16 27 C 0.07 1.13 6.84 72.01 0.49 1.63 16 28 O -0.39 -8.39 9.94 -148.98 -1.48 -9.87 16 29 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.06 1.03 7.83 -2.39 -0.02 1.01 16 33 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 37 H 0.05 1.61 8.02 -2.38 -0.02 1.59 16 38 H 0.42 13.17 8.35 -92.71 -0.77 12.39 16 39 H 0.14 6.86 5.88 -2.91 -0.02 6.84 16 40 H 0.29 12.51 8.29 -92.71 -0.77 11.74 16 41 H 0.11 5.29 8.06 -2.91 -0.02 5.26 16 42 H 0.15 6.30 8.06 -2.91 -0.02 6.27 16 43 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 44 H 0.09 1.79 7.81 -2.38 -0.02 1.78 16 45 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 46 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 Total: -1.00 -69.04 373.07 3.18 -65.86 By element: Atomic # 1 Polarization: 40.78 SS G_CDS: 0.20 Total: 40.98 kcal Atomic # 6 Polarization: -16.85 SS G_CDS: 5.39 Total: -11.46 kcal Atomic # 7 Polarization: -94.95 SS G_CDS: -2.92 Total: -97.87 kcal Atomic # 8 Polarization: -33.32 SS G_CDS: -1.52 Total: -34.84 kcal Atomic # 14 Polarization: 35.29 SS G_CDS: 2.03 Total: 37.32 kcal Total: -69.04 3.18 -65.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000540941086.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.591 kcal (2) G-P(sol) polarization free energy of solvation -69.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds