Wall clock time and date at job start Tue Mar 31 2020 13:20:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53002 * 109.47128 * 2 1 4 4 H 1.09003 * 109.49181 * 54.96719 * 3 2 1 5 5 C 1.53096 * 109.48332 * 175.00149 * 3 2 1 6 6 C 1.53177 * 109.16297 * 177.58886 * 5 3 2 7 7 H 1.09001 * 109.53950 * 183.05993 * 6 5 3 8 8 C 1.53002 * 109.54273 * 62.88942 * 6 5 3 9 9 C 1.50699 * 109.47152 * 175.17481 * 8 6 5 10 10 O 1.21273 * 120.00190 * 0.02562 * 9 8 6 11 11 N 1.34780 * 119.99794 * 179.97438 * 9 8 6 12 12 C 1.39472 * 119.99987 * 184.30507 * 11 9 8 13 13 C 1.38596 * 119.58284 * 185.28515 * 12 11 9 14 14 C 1.40807 * 118.79553 * 179.73223 * 13 12 11 15 15 C 1.41545 * 120.99858 * 180.26851 * 14 13 12 16 16 H 1.08005 * 119.99607 * 332.34633 * 15 14 13 17 17 C 1.40024 * 120.00292 * 152.34024 * 15 14 13 18 18 N 1.30747 * 120.00282 * 161.97433 * 17 15 14 19 19 Si 1.86801 * 119.99995 * 341.97912 * 17 15 14 20 20 H 1.48495 * 109.47273 * 90.37641 * 19 17 15 21 21 H 1.48505 * 109.47094 * 210.37847 * 19 17 15 22 22 H 1.48501 * 109.46924 * 330.37346 * 19 17 15 23 23 C 1.41175 * 118.00649 * 0.52803 * 14 13 12 24 24 C 1.37586 * 119.01724 * 359.48980 * 23 14 13 25 25 N 1.32085 * 121.10820 * 0.25226 * 24 23 14 26 26 C 1.53174 * 109.11116 * 302.97715 * 6 5 3 27 27 C 1.53277 * 109.06553 * 56.94034 * 26 6 5 28 28 O 1.42898 * 109.46177 * 302.44616 * 27 26 6 29 29 H 1.09003 * 109.47294 * 299.99844 * 1 2 3 30 30 H 1.09003 * 109.47225 * 60.00016 * 1 2 3 31 31 H 1.09007 * 109.47190 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47294 * 240.00156 * 2 1 3 33 33 H 1.09000 * 109.47537 * 119.99559 * 2 1 3 34 34 H 1.08996 * 109.51990 * 57.68053 * 5 3 2 35 35 H 1.08998 * 109.57038 * 297.52990 * 5 3 2 36 36 H 1.09005 * 109.47227 * 55.16975 * 8 6 5 37 37 H 1.09004 * 109.46963 * 295.17554 * 8 6 5 38 38 H 0.96998 * 119.99859 * 4.32071 * 11 9 8 39 39 H 1.08005 * 120.59817 * 0.02562 * 13 12 11 40 40 H 0.96992 * 120.00120 * 180.02562 * 18 17 15 41 41 H 1.08005 * 120.49216 * 179.77039 * 23 14 13 42 42 H 1.07998 * 119.44836 * 180.27829 * 24 23 14 43 43 H 1.09001 * 109.52072 * 176.93511 * 26 6 5 44 44 H 1.09003 * 109.51812 * 297.11752 * 26 6 5 45 45 H 1.09002 * 109.45989 * 182.44921 * 27 26 6 46 46 H 1.08997 * 109.46503 * 62.45052 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6050 1.9820 0.8414 5 6 3.5657 1.4447 0.1258 6 6 4.0732 2.8886 0.0644 7 1 5.1627 2.8939 0.0988 8 6 3.5199 3.6765 1.2535 9 6 4.1133 5.0618 1.2580 10 8 4.9008 5.3870 0.3950 11 7 3.7680 5.9396 2.2207 12 6 4.2466 7.2489 2.1749 13 6 3.9773 8.1130 3.2245 14 6 4.4733 9.4294 3.1636 15 6 4.2309 10.3489 4.2120 16 1 3.3477 10.2479 4.8255 17 6 5.1361 11.3895 4.4539 18 7 4.7666 12.4267 5.1590 19 14 6.8716 11.2958 3.7692 20 1 6.9071 11.9217 2.4230 21 1 7.8008 12.0175 4.6753 22 1 7.2865 9.8738 3.6651 23 6 5.2149 9.8063 2.0230 24 6 5.4306 8.8781 1.0305 25 7 4.9524 7.6508 1.1283 26 6 3.5985 3.5320 -1.2421 27 6 2.0698 3.4479 -1.3150 28 8 1.6631 2.0813 -1.2216 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5137 0.8900 34 1 3.9994 0.8710 -0.6932 35 1 3.8543 0.9971 1.0768 36 1 3.7811 3.1663 2.1807 37 1 2.4353 3.7461 1.1702 38 1 3.1869 5.6608 2.9456 39 1 3.4014 7.7811 4.0758 40 1 5.3935 13.1477 5.3262 41 1 5.6109 10.8070 1.9329 42 1 6.0008 9.1576 0.1570 43 1 3.9098 4.5763 -1.2680 44 1 4.0331 3.0003 -2.0887 45 1 1.7280 3.8649 -2.2623 46 1 1.6352 4.0137 -0.4910 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000542887186.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:20:16 Heat of formation + Delta-G solvation = -64.523825 kcal Electronic energy + Delta-G solvation = -26595.495578 eV Core-core repulsion = 22870.351984 eV Total energy + Delta-G solvation = -3725.143594 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.50995 -39.39066 -37.99902 -34.90711 -34.27496 -34.14622 -33.69967 -31.33562 -29.97794 -29.70205 -27.98720 -26.03572 -25.00831 -23.73502 -22.32216 -21.93200 -21.57176 -19.99819 -18.92751 -18.03508 -16.85685 -16.58294 -16.25638 -16.14962 -15.57567 -15.52151 -14.72258 -14.39325 -14.31179 -14.22431 -13.90473 -13.89981 -13.70904 -13.20836 -13.15864 -12.91226 -12.78895 -12.50822 -11.91941 -11.87334 -11.66391 -11.51850 -11.39039 -11.29162 -11.22288 -11.10453 -10.86841 -10.73250 -10.62420 -10.28058 -9.90999 -9.79516 -9.54046 -9.39624 -9.32042 -8.31247 -7.90809 -7.28519 -7.10692 -4.76994 2.25257 2.57714 3.04191 3.14435 3.17400 3.29875 3.41536 3.64171 3.87825 4.39378 4.52715 4.57367 4.65867 4.78955 4.84154 4.90301 5.08308 5.11189 5.15423 5.23595 5.36268 5.37341 5.40756 5.47085 5.52937 5.65484 5.69043 5.74260 5.77777 5.85599 5.94107 6.04899 6.12037 6.17929 6.27489 6.30715 6.34666 6.44155 6.52532 6.97084 7.07871 7.13269 7.15068 7.56903 7.71990 7.97090 8.17752 8.39422 8.59605 8.67807 9.41209 9.90161 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.031233 B = 0.002545 C = 0.002466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.275249 B =11000.154222 C =11353.921717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.116 4.116 3 C 0.087 3.913 4 H 0.058 0.942 5 C -0.145 4.145 6 C -0.071 4.071 7 H 0.083 0.917 8 C -0.144 4.144 9 C 0.499 3.501 10 O -0.474 6.474 11 N -0.664 5.664 12 C 0.360 3.640 13 C -0.295 4.295 14 C 0.128 3.872 15 C -0.438 4.438 16 H 0.094 0.906 17 C 0.087 3.913 18 N -0.797 5.797 19 Si 0.919 3.081 20 H -0.265 1.265 21 H -0.290 1.290 22 H -0.248 1.248 23 C -0.307 4.307 24 C 0.139 3.861 25 N -0.557 5.557 26 C -0.156 4.156 27 C 0.059 3.941 28 O -0.379 6.379 29 H 0.052 0.948 30 H 0.062 0.938 31 H 0.052 0.948 32 H 0.069 0.931 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.092 0.908 37 H 0.091 0.909 38 H 0.407 0.593 39 H 0.108 0.892 40 H 0.289 0.711 41 H 0.111 0.889 42 H 0.129 0.871 43 H 0.098 0.902 44 H 0.068 0.932 45 H 0.092 0.908 46 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.716 -19.293 -6.063 20.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.154 4.154 3 C 0.030 3.970 4 H 0.076 0.924 5 C -0.183 4.183 6 C -0.090 4.090 7 H 0.102 0.898 8 C -0.184 4.184 9 C 0.284 3.716 10 O -0.344 6.344 11 N -0.310 5.310 12 C 0.135 3.865 13 C -0.320 4.320 14 C 0.120 3.880 15 C -0.468 4.468 16 H 0.112 0.888 17 C -0.134 4.134 18 N -0.420 5.420 19 Si 0.746 3.254 20 H -0.191 1.191 21 H -0.218 1.218 22 H -0.172 1.172 23 C -0.330 4.330 24 C -0.015 4.015 25 N -0.277 5.277 26 C -0.194 4.194 27 C -0.017 4.017 28 O -0.299 6.299 29 H 0.071 0.929 30 H 0.081 0.919 31 H 0.071 0.929 32 H 0.088 0.912 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.091 0.909 36 H 0.110 0.890 37 H 0.109 0.891 38 H 0.242 0.758 39 H 0.126 0.874 40 H 0.099 0.901 41 H 0.129 0.871 42 H 0.146 0.854 43 H 0.116 0.884 44 H 0.086 0.914 45 H 0.110 0.890 46 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -4.096 -19.587 -7.407 21.337 hybrid contribution 0.383 0.895 1.247 1.582 sum -3.714 -18.692 -6.160 20.028 Atomic orbital electron populations 1.21723 0.95333 1.01379 1.02342 1.21552 0.96661 0.94594 1.02572 1.22165 0.93594 0.93834 0.87445 0.92405 1.22271 0.96311 0.96875 1.02835 1.20900 1.01290 0.93111 0.93716 0.89818 1.21910 1.01980 0.93682 1.00820 1.20682 0.82544 0.86429 0.81978 1.90749 1.31185 1.77547 1.34916 1.43575 1.50201 1.09496 1.27747 1.18098 0.93376 0.83619 0.91426 1.21181 1.15901 0.94672 1.00277 1.17662 0.88037 0.90733 0.91598 1.19469 1.08225 1.06136 1.12990 0.88844 1.26201 1.01723 0.92739 0.92777 1.69640 1.37312 1.05158 1.29921 0.86249 0.80242 0.80796 0.78153 1.19141 1.21792 1.17163 1.22005 1.12579 1.00623 0.97833 1.21831 0.94952 0.88015 0.96676 1.67297 1.17625 1.17995 1.24762 1.22359 0.95793 1.04034 0.97198 1.22659 0.94583 0.82541 1.01913 1.87898 1.78664 1.24994 1.38320 0.92935 0.91920 0.92923 0.91223 0.90767 0.90773 0.90915 0.88986 0.89116 0.75777 0.87372 0.90077 0.87118 0.85383 0.88412 0.91365 0.89021 0.93351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.81 37.15 0.36 -0.75 16 2 C -0.12 -0.88 5.64 -26.73 -0.15 -1.03 16 3 C 0.09 0.79 2.37 -26.68 -0.06 0.72 16 4 H 0.06 0.50 6.72 -51.93 -0.35 0.15 16 5 C -0.15 -1.27 4.92 -26.59 -0.13 -1.41 16 6 C -0.07 -0.78 2.33 -90.44 -0.21 -1.00 16 7 H 0.08 1.03 7.96 -51.93 -0.41 0.62 16 8 C -0.14 -1.56 4.61 -27.88 -0.13 -1.69 16 9 C 0.50 8.03 7.48 -10.98 -0.08 7.95 16 10 O -0.47 -9.53 12.28 5.56 0.07 -9.46 16 11 N -0.66 -11.15 5.39 -11.49 -0.06 -11.21 16 12 C 0.36 7.86 7.41 -154.70 -1.15 6.72 16 13 C -0.29 -6.67 9.73 -38.48 -0.37 -7.05 16 14 C 0.13 3.20 5.17 -106.55 -0.55 2.65 16 15 C -0.44 -11.44 9.64 -37.65 -0.36 -11.80 16 16 H 0.09 2.52 8.06 -52.48 -0.42 2.10 16 17 C 0.09 2.20 5.43 -17.34 -0.09 2.10 16 18 N -0.80 -20.37 13.92 55.55 0.77 -19.60 16 19 Si 0.92 20.42 24.54 -169.99 -4.17 16.25 16 20 H -0.27 -5.70 6.44 56.52 0.36 -5.33 16 21 H -0.29 -6.18 7.11 56.52 0.40 -5.77 16 22 H -0.25 -5.77 7.01 56.52 0.40 -5.37 16 23 C -0.31 -7.39 7.39 -38.71 -0.29 -7.68 16 24 C 0.14 3.20 11.15 -17.68 -0.20 3.01 16 25 N -0.56 -13.22 7.88 -12.52 -0.10 -13.32 16 26 C -0.16 -1.89 5.42 -26.50 -0.14 -2.03 16 27 C 0.06 0.66 6.57 37.30 0.25 0.90 16 28 O -0.38 -4.25 9.95 -35.23 -0.35 -4.60 16 29 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.54 7.82 -51.93 -0.41 0.13 16 31 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 37 H 0.09 0.87 5.03 -51.93 -0.26 0.61 16 38 H 0.41 5.19 8.70 -40.82 -0.35 4.84 16 39 H 0.11 2.20 8.06 -52.48 -0.42 1.78 16 40 H 0.29 6.66 8.29 -40.82 -0.34 6.32 16 41 H 0.11 2.61 4.42 -52.48 -0.23 2.38 16 42 H 0.13 2.59 8.06 -52.49 -0.42 2.17 16 43 H 0.10 1.46 5.93 -51.93 -0.31 1.15 16 44 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 45 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 46 H 0.05 0.53 6.49 -51.93 -0.34 0.20 16 LS Contribution 358.40 15.07 5.40 5.40 Total: -1.00 -30.65 358.40 -8.66 -39.32 By element: Atomic # 1 Polarization: 14.51 SS G_CDS: -6.91 Total: 7.60 kcal Atomic # 6 Polarization: -7.07 SS G_CDS: -3.31 Total: -10.38 kcal Atomic # 7 Polarization: -44.74 SS G_CDS: 0.61 Total: -44.13 kcal Atomic # 8 Polarization: -13.77 SS G_CDS: -0.28 Total: -14.05 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -4.17 Total: 16.25 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -30.65 -8.66 -39.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000542887186.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.207 kcal (2) G-P(sol) polarization free energy of solvation -30.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds