Wall clock time and date at job start Tue Mar 31 2020 13:20:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53002 * 109.47128 * 2 1 4 4 H 1.09003 * 109.49181 * 54.96719 * 3 2 1 5 5 C 1.53096 * 109.48332 * 175.00149 * 3 2 1 6 6 C 1.53177 * 109.16297 * 177.58886 * 5 3 2 7 7 H 1.09001 * 109.53950 * 183.05993 * 6 5 3 8 8 C 1.53002 * 109.54273 * 62.88942 * 6 5 3 9 9 C 1.50699 * 109.47152 * 175.17481 * 8 6 5 10 10 O 1.21273 * 120.00190 * 0.02562 * 9 8 6 11 11 N 1.34780 * 119.99794 * 179.97438 * 9 8 6 12 12 C 1.39472 * 119.99987 * 184.30507 * 11 9 8 13 13 C 1.38596 * 119.58284 * 185.28515 * 12 11 9 14 14 C 1.40807 * 118.79553 * 179.73223 * 13 12 11 15 15 C 1.41545 * 120.99858 * 180.26851 * 14 13 12 16 16 H 1.08005 * 119.99607 * 332.34633 * 15 14 13 17 17 C 1.40024 * 120.00292 * 152.34024 * 15 14 13 18 18 N 1.30747 * 120.00282 * 161.97433 * 17 15 14 19 19 Si 1.86801 * 119.99995 * 341.97912 * 17 15 14 20 20 H 1.48495 * 109.47273 * 90.37641 * 19 17 15 21 21 H 1.48505 * 109.47094 * 210.37847 * 19 17 15 22 22 H 1.48501 * 109.46924 * 330.37346 * 19 17 15 23 23 C 1.41175 * 118.00649 * 0.52803 * 14 13 12 24 24 C 1.37586 * 119.01724 * 359.48980 * 23 14 13 25 25 N 1.32085 * 121.10820 * 0.25226 * 24 23 14 26 26 C 1.53174 * 109.11116 * 302.97715 * 6 5 3 27 27 C 1.53277 * 109.06553 * 56.94034 * 26 6 5 28 28 O 1.42898 * 109.46177 * 302.44616 * 27 26 6 29 29 H 1.09003 * 109.47294 * 299.99844 * 1 2 3 30 30 H 1.09003 * 109.47225 * 60.00016 * 1 2 3 31 31 H 1.09007 * 109.47190 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47294 * 240.00156 * 2 1 3 33 33 H 1.09000 * 109.47537 * 119.99559 * 2 1 3 34 34 H 1.08996 * 109.51990 * 57.68053 * 5 3 2 35 35 H 1.08998 * 109.57038 * 297.52990 * 5 3 2 36 36 H 1.09005 * 109.47227 * 55.16975 * 8 6 5 37 37 H 1.09004 * 109.46963 * 295.17554 * 8 6 5 38 38 H 0.96998 * 119.99859 * 4.32071 * 11 9 8 39 39 H 1.08005 * 120.59817 * 0.02562 * 13 12 11 40 40 H 0.96992 * 120.00120 * 180.02562 * 18 17 15 41 41 H 1.08005 * 120.49216 * 179.77039 * 23 14 13 42 42 H 1.07998 * 119.44836 * 180.27829 * 24 23 14 43 43 H 1.09001 * 109.52072 * 176.93511 * 26 6 5 44 44 H 1.09003 * 109.51812 * 297.11752 * 26 6 5 45 45 H 1.09002 * 109.45989 * 182.44921 * 27 26 6 46 46 H 1.08997 * 109.46503 * 62.45052 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6050 1.9820 0.8414 5 6 3.5657 1.4447 0.1258 6 6 4.0732 2.8886 0.0644 7 1 5.1627 2.8939 0.0988 8 6 3.5199 3.6765 1.2535 9 6 4.1133 5.0618 1.2580 10 8 4.9008 5.3870 0.3950 11 7 3.7680 5.9396 2.2207 12 6 4.2466 7.2489 2.1749 13 6 3.9773 8.1130 3.2245 14 6 4.4733 9.4294 3.1636 15 6 4.2309 10.3489 4.2120 16 1 3.3477 10.2479 4.8255 17 6 5.1361 11.3895 4.4539 18 7 4.7666 12.4267 5.1590 19 14 6.8716 11.2958 3.7692 20 1 6.9071 11.9217 2.4230 21 1 7.8008 12.0175 4.6753 22 1 7.2865 9.8738 3.6651 23 6 5.2149 9.8063 2.0230 24 6 5.4306 8.8781 1.0305 25 7 4.9524 7.6508 1.1283 26 6 3.5985 3.5320 -1.2421 27 6 2.0698 3.4479 -1.3150 28 8 1.6631 2.0813 -1.2216 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5137 0.8900 34 1 3.9994 0.8710 -0.6932 35 1 3.8543 0.9971 1.0768 36 1 3.7811 3.1663 2.1807 37 1 2.4353 3.7461 1.1702 38 1 3.1869 5.6608 2.9456 39 1 3.4014 7.7811 4.0758 40 1 5.3935 13.1477 5.3262 41 1 5.6109 10.8070 1.9329 42 1 6.0008 9.1576 0.1570 43 1 3.9098 4.5763 -1.2680 44 1 4.0331 3.0003 -2.0887 45 1 1.7280 3.8649 -2.2623 46 1 1.6352 4.0137 -0.4910 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000542887186.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:20:15 Heat of formation + Delta-G solvation = -83.062404 kcal Electronic energy + Delta-G solvation = -26596.299471 eV Core-core repulsion = 22870.351984 eV Total energy + Delta-G solvation = -3725.947487 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.66268 -40.67812 -39.48950 -36.33869 -35.52973 -35.31692 -34.82128 -33.21012 -31.20006 -30.69718 -29.18676 -27.92908 -25.82995 -24.53589 -23.92408 -23.64633 -22.20982 -21.46053 -20.09068 -19.62684 -18.11221 -17.90339 -17.33622 -17.30267 -17.13564 -16.64203 -16.17409 -16.00840 -15.53656 -15.38379 -15.07786 -14.89140 -14.72383 -14.63677 -14.50288 -14.20121 -13.90362 -13.69747 -13.40965 -13.00950 -12.76891 -12.65535 -12.62748 -12.52453 -12.38247 -12.19967 -12.03952 -11.75051 -11.73470 -11.49600 -11.40768 -11.18883 -11.04084 -10.87966 -10.21322 -10.19075 -9.66111 -9.02268 -8.96382 -6.73582 0.53037 0.73874 1.25862 1.39038 1.45630 1.82828 2.07686 2.09609 2.65326 2.89559 3.51813 3.52893 3.68111 3.77569 3.94865 4.01633 4.13201 4.21724 4.24737 4.31128 4.46080 4.49105 4.52246 4.60148 4.63183 4.65028 4.69143 4.74363 4.76298 4.78665 4.95846 5.01454 5.14869 5.17998 5.18406 5.22673 5.23750 5.26951 5.33831 5.38604 5.46889 5.51040 5.71480 6.05709 6.19518 6.36758 6.50402 6.51503 6.68365 7.27974 7.69804 8.05383 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.031233 B = 0.002545 C = 0.002466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.275249 B =11000.154222 C =11353.921717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.115 4.115 3 C 0.080 3.920 4 H 0.068 0.932 5 C -0.136 4.136 6 C -0.071 4.071 7 H 0.067 0.933 8 C -0.130 4.130 9 C 0.495 3.505 10 O -0.516 6.516 11 N -0.655 5.655 12 C 0.361 3.639 13 C -0.302 4.302 14 C 0.113 3.887 15 C -0.468 4.468 16 H 0.070 0.930 17 C 0.057 3.943 18 N -0.828 5.828 19 Si 0.967 3.033 20 H -0.253 1.253 21 H -0.273 1.273 22 H -0.265 1.265 23 C -0.320 4.320 24 C 0.135 3.865 25 N -0.573 5.573 26 C -0.153 4.153 27 C 0.064 3.936 28 O -0.392 6.392 29 H 0.056 0.944 30 H 0.045 0.955 31 H 0.062 0.938 32 H 0.064 0.936 33 H 0.095 0.905 34 H 0.071 0.929 35 H 0.097 0.903 36 H 0.127 0.873 37 H 0.110 0.890 38 H 0.427 0.573 39 H 0.126 0.874 40 H 0.299 0.701 41 H 0.114 0.886 42 H 0.154 0.846 43 H 0.066 0.934 44 H 0.065 0.935 45 H 0.093 0.907 46 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.719 -21.628 -5.962 22.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.152 4.152 3 C 0.023 3.977 4 H 0.086 0.914 5 C -0.174 4.174 6 C -0.090 4.090 7 H 0.086 0.914 8 C -0.169 4.169 9 C 0.283 3.717 10 O -0.388 6.388 11 N -0.303 5.303 12 C 0.134 3.866 13 C -0.327 4.327 14 C 0.104 3.896 15 C -0.498 4.498 16 H 0.088 0.912 17 C -0.162 4.162 18 N -0.453 5.453 19 Si 0.791 3.209 20 H -0.178 1.178 21 H -0.200 1.200 22 H -0.190 1.190 23 C -0.343 4.343 24 C -0.019 4.019 25 N -0.293 5.293 26 C -0.191 4.191 27 C -0.013 4.013 28 O -0.312 6.312 29 H 0.075 0.925 30 H 0.064 0.936 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.114 0.886 34 H 0.090 0.910 35 H 0.115 0.885 36 H 0.145 0.855 37 H 0.128 0.872 38 H 0.266 0.734 39 H 0.144 0.856 40 H 0.110 0.890 41 H 0.132 0.868 42 H 0.172 0.828 43 H 0.084 0.916 44 H 0.084 0.916 45 H 0.111 0.889 46 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -4.136 -21.946 -7.278 23.488 hybrid contribution 0.320 1.480 1.141 1.896 sum -3.816 -20.466 -6.137 21.704 Atomic orbital electron populations 1.21717 0.95411 1.01908 1.01727 1.21580 0.96570 0.93658 1.03373 1.22397 0.93747 0.94666 0.86877 0.91441 1.22223 0.96022 0.94987 1.04137 1.20885 1.00413 0.94629 0.93034 0.91406 1.21931 1.02574 0.90037 1.02357 1.21652 0.81643 0.87832 0.80614 1.90743 1.33116 1.78598 1.36328 1.43635 1.50113 1.07718 1.28852 1.18360 0.92265 0.85506 0.90439 1.21392 1.15859 0.94204 1.01275 1.17878 0.88570 0.91548 0.91555 1.19466 1.08458 1.07871 1.14005 0.91231 1.26776 1.04215 0.92244 0.92934 1.69645 1.38704 1.05868 1.31049 0.85510 0.76911 0.79841 0.78609 1.17787 1.19956 1.18993 1.22098 1.13085 1.01116 0.98005 1.22263 0.94682 0.87743 0.97205 1.67441 1.18004 1.18277 1.25563 1.22263 0.96683 1.02067 0.98108 1.22584 0.93633 0.82911 1.02168 1.87901 1.78770 1.24778 1.39708 0.92474 0.93587 0.91890 0.91740 0.88642 0.91011 0.88452 0.85516 0.87161 0.73424 0.85584 0.88994 0.86843 0.82847 0.91584 0.91648 0.88933 0.93142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 9.81 71.98 0.71 -1.16 16 2 C -0.11 -1.37 5.64 30.59 0.17 -1.20 16 3 C 0.08 1.20 2.37 30.63 0.07 1.27 16 4 H 0.07 0.89 6.72 -2.39 -0.02 0.88 16 5 C -0.14 -1.95 4.92 30.69 0.15 -1.80 16 6 C -0.07 -1.41 2.33 -10.68 -0.02 -1.43 16 7 H 0.07 1.59 7.96 -2.39 -0.02 1.57 16 8 C -0.13 -2.40 4.61 29.85 0.14 -2.26 16 9 C 0.49 15.03 7.48 87.66 0.66 15.69 16 10 O -0.52 -20.43 12.28 -3.01 -0.04 -20.47 16 11 N -0.66 -20.68 5.39 -308.66 -1.66 -22.35 16 12 C 0.36 15.40 7.41 132.75 0.98 16.38 16 13 C -0.30 -13.55 9.73 22.98 0.22 -13.33 16 14 C 0.11 5.67 5.17 -21.11 -0.11 5.56 16 15 C -0.47 -25.02 9.64 23.52 0.23 -24.80 16 16 H 0.07 3.92 8.06 -2.91 -0.02 3.90 16 17 C 0.06 2.90 5.43 85.29 0.46 3.36 16 18 N -0.83 -42.86 13.92 21.84 0.30 -42.55 16 19 Si 0.97 41.75 24.54 68.60 1.68 43.43 16 20 H -0.25 -10.30 6.44 99.48 0.64 -9.65 16 21 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 22 H -0.27 -12.13 7.01 99.48 0.70 -11.43 16 23 C -0.32 -15.30 7.39 22.84 0.17 -15.14 16 24 C 0.13 6.12 11.15 84.50 0.94 7.06 16 25 N -0.57 -26.77 7.88 -193.53 -1.53 -28.29 16 26 C -0.15 -3.61 5.42 30.75 0.17 -3.44 16 27 C 0.06 1.33 6.57 72.07 0.47 1.80 16 28 O -0.39 -8.03 9.95 -148.98 -1.48 -9.52 16 29 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.04 0.72 7.82 -2.39 -0.02 0.70 16 31 H 0.06 0.64 8.14 -2.38 -0.02 0.62 16 32 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.13 1.56 8.14 -2.38 -0.02 1.55 16 37 H 0.11 1.70 5.03 -2.38 -0.01 1.68 16 38 H 0.43 9.69 8.70 -92.71 -0.81 8.89 16 39 H 0.13 5.05 8.06 -2.91 -0.02 5.03 16 40 H 0.30 13.82 8.29 -92.71 -0.77 13.05 16 41 H 0.11 5.28 4.42 -2.91 -0.01 5.27 16 42 H 0.15 6.00 8.06 -2.91 -0.02 5.98 16 43 H 0.07 2.00 5.93 -2.39 -0.01 1.99 16 44 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 45 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 46 H 0.05 1.02 6.49 -2.39 -0.02 1.00 16 Total: -1.00 -67.58 358.40 2.81 -64.77 By element: Atomic # 1 Polarization: 28.28 SS G_CDS: 0.12 Total: 28.39 kcal Atomic # 6 Polarization: -18.83 SS G_CDS: 5.41 Total: -13.42 kcal Atomic # 7 Polarization: -90.31 SS G_CDS: -2.88 Total: -93.19 kcal Atomic # 8 Polarization: -28.46 SS G_CDS: -1.52 Total: -29.98 kcal Atomic # 14 Polarization: 41.75 SS G_CDS: 1.68 Total: 43.43 kcal Total: -67.58 2.81 -64.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000542887186.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.292 kcal (2) G-P(sol) polarization free energy of solvation -67.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds