Wall clock time and date at job start Tue Mar 31 2020 13:20:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47049 * 2 1 4 4 H 1.09005 * 109.48027 * 304.97682 * 3 2 1 5 5 C 1.53100 * 109.49554 * 185.03446 * 3 2 1 6 6 C 1.53174 * 109.16109 * 182.49231 * 5 3 2 7 7 H 1.09000 * 109.54105 * 296.93334 * 6 5 3 8 8 C 1.53003 * 109.54693 * 176.76095 * 6 5 3 9 9 C 1.50695 * 109.47640 * 175.17424 * 8 6 5 10 10 O 1.21285 * 119.99553 * 0.02562 * 9 8 6 11 11 N 1.34770 * 120.00356 * 180.02562 * 9 8 6 12 12 C 1.39471 * 120.00154 * 184.64715 * 11 9 8 13 13 C 1.38596 * 119.57874 * 174.50830 * 12 11 9 14 14 C 1.40816 * 118.79103 * 179.71994 * 13 12 11 15 15 C 1.41543 * 120.99340 * 180.02562 * 14 13 12 16 16 H 1.08009 * 120.00286 * 353.89044 * 15 14 13 17 17 C 1.40027 * 120.00165 * 173.88535 * 15 14 13 18 18 N 1.30746 * 120.00266 * 323.22791 * 17 15 14 19 19 Si 1.86798 * 120.00046 * 143.22386 * 17 15 14 20 20 H 1.48496 * 109.47250 * 85.00082 * 19 17 15 21 21 H 1.48505 * 109.47145 * 205.00424 * 19 17 15 22 22 H 1.48504 * 109.47271 * 325.00189 * 19 17 15 23 23 C 1.41168 * 118.00873 * 359.97438 * 14 13 12 24 24 C 1.37584 * 119.01686 * 0.02562 * 23 14 13 25 25 N 1.32076 * 121.11050 * 359.97438 * 24 23 14 26 26 C 1.53176 * 109.11153 * 56.84776 * 6 5 3 27 27 C 1.53091 * 109.16101 * 303.06450 * 26 6 5 28 28 O 1.42904 * 109.48112 * 64.99727 * 3 2 1 29 29 H 1.09008 * 109.47061 * 60.00052 * 1 2 3 30 30 H 1.08998 * 109.47323 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47210 * 299.99964 * 1 2 3 32 32 H 1.08994 * 109.47249 * 239.99889 * 2 1 3 33 33 H 1.09000 * 109.46881 * 119.99693 * 2 1 3 34 34 H 1.09008 * 109.59822 * 62.54371 * 5 3 2 35 35 H 1.09005 * 109.45743 * 302.35585 * 5 3 2 36 36 H 1.09009 * 109.46769 * 55.17405 * 8 6 5 37 37 H 1.09004 * 109.47041 * 295.18184 * 8 6 5 38 38 H 0.97000 * 119.99990 * 4.63710 * 11 9 8 39 39 H 1.07992 * 120.60329 * 359.69326 * 13 12 11 40 40 H 0.96998 * 120.00064 * 179.97438 * 18 17 15 41 41 H 1.08003 * 120.49335 * 180.02562 * 23 14 13 42 42 H 1.08007 * 119.44602 * 179.97438 * 24 23 14 43 43 H 1.08997 * 109.52156 * 62.97084 * 26 6 5 44 44 H 1.08995 * 109.52470 * 183.16133 * 26 6 5 45 45 H 1.09001 * 109.48062 * 177.58707 * 27 26 6 46 46 H 1.08993 * 109.48414 * 297.61275 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6057 1.9816 -0.8420 5 6 3.5657 1.4450 -0.1266 6 6 4.0730 2.8889 -0.0632 7 1 3.6808 3.4507 -0.9109 8 6 5.6024 2.8965 -0.1078 9 6 6.0963 4.3191 -0.1649 10 8 5.3031 5.2366 -0.1690 11 7 7.4193 4.5718 -0.2114 12 6 7.8800 5.8875 -0.1664 13 6 9.2423 6.1334 -0.0994 14 6 9.6894 7.4681 -0.0607 15 6 11.0700 7.7726 0.0074 16 1 11.7927 6.9793 0.1299 17 6 11.4991 9.1024 -0.0841 18 7 10.8851 9.9338 -0.8848 19 14 12.9487 9.6885 0.9379 20 1 14.2141 9.3805 0.2246 21 1 12.8442 11.1546 1.1501 22 1 12.9401 8.9964 2.2518 23 6 8.7195 8.4934 -0.0929 24 6 7.3886 8.1511 -0.1597 25 7 7.0102 6.8862 -0.1943 26 6 3.5953 3.5314 1.2426 27 6 2.0683 3.4485 1.3142 28 8 1.6619 2.0816 1.2210 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 1.8932 -0.5138 0.8900 34 1 3.8543 0.9990 -1.0785 35 1 3.9989 0.8704 0.6921 36 1 5.9428 2.3580 -0.9924 37 1 5.9944 2.4113 0.7861 38 1 8.0511 3.8387 -0.2761 39 1 9.9480 5.3163 -0.0769 40 1 11.1821 10.8550 -0.9479 41 1 9.0178 9.5310 -0.0656 42 1 6.6407 8.9299 -0.1843 43 1 4.0291 3.0004 2.0899 44 1 3.9050 4.5761 1.2692 45 1 1.7256 3.8658 2.2611 46 1 1.6345 4.0140 0.4896 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000542887188.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:20:21 Heat of formation + Delta-G solvation = -88.143113 kcal Electronic energy + Delta-G solvation = -26097.162824 eV Core-core repulsion = 22370.995020 eV Total energy + Delta-G solvation = -3726.167803 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.40853 -40.46133 -39.40401 -36.43192 -35.57365 -35.25959 -34.83913 -32.67510 -31.04922 -30.65500 -29.27162 -27.95393 -25.41877 -24.49868 -23.65046 -23.39317 -22.00152 -21.24643 -20.71766 -19.70804 -18.11132 -17.68259 -17.35292 -16.96271 -16.77299 -16.48810 -16.09647 -15.93367 -15.66485 -15.52046 -14.97905 -14.80606 -14.52419 -14.37966 -14.20371 -13.99746 -13.96490 -13.53439 -13.26023 -13.06841 -12.79116 -12.69165 -12.63172 -12.45628 -12.07996 -12.06021 -11.97242 -11.92874 -11.71170 -11.44436 -11.37292 -11.14318 -10.97672 -10.79140 -10.34732 -10.13381 -9.53048 -8.92057 -8.80329 -6.54856 0.79406 0.98191 1.36712 1.48665 1.61245 1.95532 2.12913 2.22331 2.65738 2.87738 3.57549 3.67514 3.75665 3.80418 3.99590 4.03181 4.23202 4.25240 4.30414 4.41468 4.45886 4.53263 4.57798 4.70122 4.75440 4.78603 4.85383 4.87141 4.94860 4.95960 4.98891 5.00726 5.05450 5.14179 5.18956 5.22437 5.25149 5.31831 5.45223 5.48633 5.50616 5.65533 5.90342 6.13599 6.34471 6.42464 6.67672 6.75833 6.81367 7.40249 7.90981 8.04407 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.042796 B = 0.002155 C = 0.002112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.113078 B =12987.822475 C =13252.389283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.112 4.112 3 C 0.082 3.918 4 H 0.051 0.949 5 C -0.135 4.135 6 C -0.071 4.071 7 H 0.059 0.941 8 C -0.120 4.120 9 C 0.490 3.510 10 O -0.521 6.521 11 N -0.655 5.655 12 C 0.354 3.646 13 C -0.334 4.334 14 C 0.110 3.890 15 C -0.480 4.480 16 H 0.090 0.910 17 C 0.051 3.949 18 N -0.777 5.777 19 Si 0.981 3.019 20 H -0.252 1.252 21 H -0.263 1.263 22 H -0.259 1.259 23 C -0.278 4.278 24 C 0.102 3.898 25 N -0.590 5.590 26 C -0.153 4.153 27 C 0.067 3.933 28 O -0.392 6.392 29 H 0.052 0.948 30 H 0.065 0.935 31 H 0.046 0.954 32 H 0.095 0.905 33 H 0.070 0.930 34 H 0.095 0.905 35 H 0.081 0.919 36 H 0.124 0.876 37 H 0.117 0.883 38 H 0.425 0.575 39 H 0.119 0.881 40 H 0.299 0.701 41 H 0.117 0.883 42 H 0.134 0.866 43 H 0.068 0.932 44 H 0.062 0.938 45 H 0.097 0.903 46 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.750 -17.065 1.584 19.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.149 4.149 3 C 0.025 3.975 4 H 0.069 0.931 5 C -0.173 4.173 6 C -0.090 4.090 7 H 0.077 0.923 8 C -0.160 4.160 9 C 0.277 3.723 10 O -0.394 6.394 11 N -0.303 5.303 12 C 0.126 3.874 13 C -0.360 4.360 14 C 0.102 3.898 15 C -0.509 4.509 16 H 0.108 0.892 17 C -0.172 4.172 18 N -0.399 5.399 19 Si 0.800 3.200 20 H -0.176 1.176 21 H -0.187 1.187 22 H -0.183 1.183 23 C -0.301 4.301 24 C -0.048 4.048 25 N -0.311 5.311 26 C -0.190 4.190 27 C -0.010 4.010 28 O -0.312 6.312 29 H 0.071 0.929 30 H 0.084 0.916 31 H 0.065 0.935 32 H 0.113 0.887 33 H 0.088 0.912 34 H 0.114 0.886 35 H 0.100 0.900 36 H 0.142 0.858 37 H 0.135 0.865 38 H 0.263 0.737 39 H 0.137 0.863 40 H 0.111 0.889 41 H 0.134 0.866 42 H 0.152 0.848 43 H 0.087 0.913 44 H 0.080 0.920 45 H 0.115 0.885 46 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -11.428 -16.531 1.551 20.156 hybrid contribution 1.928 1.055 0.040 2.198 sum -9.500 -15.476 1.590 18.228 Atomic orbital electron populations 1.21715 0.95482 1.01992 1.01552 1.21565 0.96546 0.93264 1.03574 1.22321 0.94057 0.94701 0.86459 0.93089 1.22243 0.95624 0.95086 1.04340 1.20899 0.93406 0.96884 0.97773 0.92284 1.21780 0.96652 0.90783 1.06794 1.21774 0.81511 0.93269 0.75717 1.90739 1.54538 1.48179 1.45951 1.43584 1.08847 1.05422 1.72423 1.18331 0.89032 0.85563 0.94496 1.21178 0.93183 0.97113 1.24568 1.17899 0.94187 0.91112 0.86614 1.19861 0.92307 0.94124 1.44565 0.89216 1.27023 1.00867 0.96182 0.93167 1.69910 1.38081 1.07296 1.24587 0.85241 0.77227 0.78092 0.79432 1.17644 1.18735 1.18269 1.22169 0.93283 1.00295 1.14383 1.22092 0.94284 0.92306 0.96110 1.67344 1.37488 0.99444 1.26846 1.22272 0.96812 1.01903 0.98039 1.22492 0.93696 0.82750 1.02037 1.87880 1.78902 1.24837 1.39547 0.92935 0.91565 0.93518 0.88700 0.91151 0.88618 0.90040 0.85804 0.86536 0.73706 0.86326 0.88940 0.86563 0.84837 0.91295 0.91960 0.88502 0.93870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 9.81 71.98 0.71 -1.38 16 2 C -0.11 -1.51 5.64 30.59 0.17 -1.34 16 3 C 0.08 1.46 2.64 30.63 0.08 1.54 16 4 H 0.05 0.96 8.14 -2.38 -0.02 0.94 16 5 C -0.14 -2.13 4.71 30.69 0.14 -1.98 16 6 C -0.07 -1.56 1.92 -10.68 -0.02 -1.58 16 7 H 0.06 1.55 7.96 -2.39 -0.02 1.54 16 8 C -0.12 -2.49 5.18 29.85 0.15 -2.34 16 9 C 0.49 16.66 7.53 87.66 0.66 17.32 16 10 O -0.52 -22.87 12.24 -3.05 -0.04 -22.91 16 11 N -0.65 -23.29 5.39 -308.66 -1.66 -24.96 16 12 C 0.35 16.82 7.41 132.75 0.98 17.81 16 13 C -0.33 -16.34 9.73 22.99 0.22 -16.12 16 14 C 0.11 5.92 5.72 -21.11 -0.12 5.79 16 15 C -0.48 -24.70 9.01 23.52 0.21 -24.49 16 16 H 0.09 4.36 8.05 -2.91 -0.02 4.34 16 17 C 0.05 2.41 4.94 85.29 0.42 2.83 16 18 N -0.78 -38.10 11.17 21.84 0.24 -37.85 16 19 Si 0.98 35.04 29.68 68.60 2.04 37.07 16 20 H -0.25 -8.46 7.11 99.48 0.71 -7.75 16 21 H -0.26 -8.90 7.11 99.48 0.71 -8.19 16 22 H -0.26 -9.31 7.11 99.48 0.71 -8.60 16 23 C -0.28 -15.06 9.01 22.83 0.21 -14.85 16 24 C 0.10 5.37 11.15 84.50 0.94 6.31 16 25 N -0.59 -31.10 7.85 -193.53 -1.52 -32.62 16 26 C -0.15 -3.89 5.13 30.68 0.16 -3.73 16 27 C 0.07 1.57 6.84 72.01 0.49 2.06 16 28 O -0.39 -8.92 9.94 -148.98 -1.48 -10.40 16 29 H 0.05 0.71 8.14 -2.38 -0.02 0.69 16 30 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.05 0.79 7.82 -2.39 -0.02 0.77 16 32 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.10 1.10 8.14 -2.38 -0.02 1.08 16 35 H 0.08 1.18 8.14 -2.38 -0.02 1.16 16 36 H 0.12 1.81 8.14 -2.38 -0.02 1.79 16 37 H 0.12 1.89 8.14 -2.38 -0.02 1.87 16 38 H 0.42 11.13 8.70 -92.71 -0.81 10.33 16 39 H 0.12 5.11 8.06 -2.91 -0.02 5.09 16 40 H 0.30 12.91 8.29 -92.71 -0.77 12.14 16 41 H 0.12 6.36 5.82 -2.91 -0.02 6.34 16 42 H 0.13 6.34 8.06 -2.91 -0.02 6.32 16 43 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 44 H 0.06 2.06 6.05 -2.39 -0.01 2.04 16 45 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 46 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 Total: -1.00 -69.82 370.49 3.17 -66.66 By element: Atomic # 1 Polarization: 38.98 SS G_CDS: 0.17 Total: 39.15 kcal Atomic # 6 Polarization: -19.55 SS G_CDS: 5.42 Total: -14.14 kcal Atomic # 7 Polarization: -92.49 SS G_CDS: -2.94 Total: -95.43 kcal Atomic # 8 Polarization: -31.79 SS G_CDS: -1.52 Total: -33.31 kcal Atomic # 14 Polarization: 35.04 SS G_CDS: 2.04 Total: 37.07 kcal Total: -69.82 3.17 -66.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000542887188.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.487 kcal (2) G-P(sol) polarization free energy of solvation -69.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds