Wall clock time and date at job start Tue Mar 31 2020 12:30:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46762 * 110.99418 * 2 1 4 4 C 1.53416 * 108.57645 * 175.04798 * 3 2 1 5 5 O 1.43111 * 107.93064 * 296.70419 * 4 3 2 6 6 C 1.36006 * 116.72726 * 45.43835 * 5 4 3 7 7 C 1.39085 * 118.60312 * 165.19866 * 6 5 4 8 8 C 1.37692 * 120.41262 * 179.51691 * 7 6 5 9 9 C 1.39694 * 119.88961 * 0.28093 * 8 7 6 10 10 C 1.47609 * 120.10183 * 179.78410 * 9 8 7 11 11 O 1.21582 * 120.00477 * 180.02562 * 10 9 8 12 12 N 1.34779 * 120.00229 * 0.02562 * 10 9 8 13 13 C 1.46500 * 120.00323 * 179.97438 * 12 10 9 14 14 C 1.52999 * 109.46877 * 180.02562 * 13 12 10 15 15 C 1.53006 * 109.47052 * 299.99857 * 14 13 12 16 16 C 1.52997 * 109.47297 * 59.99913 * 14 13 12 17 17 C 1.50698 * 109.47072 * 180.02562 * 14 13 12 18 18 H 1.08000 * 120.00083 * 1.34187 * 17 14 13 19 19 C 1.37876 * 120.00377 * 181.35011 * 17 14 13 20 20 N 1.31509 * 120.00237 * 193.97504 * 19 17 14 21 21 Si 1.86800 * 119.99941 * 13.96805 * 19 17 14 22 22 H 1.48498 * 109.46916 * 84.55189 * 21 19 17 23 23 H 1.48496 * 109.47213 * 204.55148 * 21 19 17 24 24 H 1.48507 * 109.47033 * 324.55530 * 21 19 17 25 25 C 1.39552 * 119.80163 * 359.53501 * 9 8 7 26 26 C 1.38728 * 120.12503 * 0.54243 * 25 9 8 27 27 H 1.08994 * 109.47507 * 294.60586 * 1 2 3 28 28 H 1.08995 * 109.47420 * 54.61229 * 1 2 3 29 29 H 1.09005 * 109.46611 * 174.60488 * 1 2 3 30 30 H 1.08996 * 109.62115 * 294.77651 * 3 2 1 31 31 H 1.09002 * 109.61845 * 55.32729 * 3 2 1 32 32 H 1.09002 * 109.77165 * 56.30843 * 4 3 2 33 33 H 1.08997 * 109.77095 * 177.09174 * 4 3 2 34 34 H 1.08000 * 119.79119 * 359.49421 * 7 6 5 35 35 H 1.08007 * 120.05673 * 180.02562 * 8 7 6 36 36 H 0.97001 * 119.99749 * 359.97438 * 12 10 9 37 37 H 1.08996 * 109.47242 * 300.00139 * 13 12 10 38 38 H 1.09001 * 109.46773 * 60.00475 * 13 12 10 39 39 H 1.09002 * 109.46860 * 69.37518 * 15 14 13 40 40 H 1.09000 * 109.46897 * 189.36872 * 15 14 13 41 41 H 1.08994 * 109.47243 * 309.36706 * 15 14 13 42 42 H 1.09005 * 109.47102 * 60.00074 * 16 14 13 43 43 H 1.09007 * 109.47124 * 179.97438 * 16 14 13 44 44 H 1.08999 * 109.47473 * 299.99910 * 16 14 13 45 45 H 0.97001 * 120.00123 * 179.97438 * 20 19 17 46 46 H 1.08007 * 119.94349 * 180.28272 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9948 1.3702 0.0000 4 6 3.5226 1.3074 0.1255 5 8 3.8368 0.7159 1.3902 6 6 3.1374 -0.3984 1.7350 7 6 3.6072 -1.1814 2.7841 8 6 2.9231 -2.3120 3.1708 9 6 1.7527 -2.6800 2.5028 10 6 1.0181 -3.8938 2.9103 11 8 0.0000 -4.2127 2.3273 12 7 1.4760 -4.6486 3.9287 13 6 0.7467 -5.8529 4.3335 14 6 1.4731 -6.5199 5.5033 15 6 2.8903 -6.9027 5.0720 16 6 1.5440 -5.5464 6.6815 17 6 0.7232 -7.7591 5.9194 18 1 -0.1690 -8.0545 5.3874 19 6 1.1761 -8.5157 6.9793 20 7 0.7001 -9.7260 7.1741 21 14 2.4659 -7.8216 8.1386 22 1 1.8024 -6.9987 9.1816 23 1 3.2036 -8.9374 8.7835 24 1 3.4169 -6.9767 7.3723 25 6 1.2772 -1.8939 1.4523 26 6 1.9704 -0.7564 1.0649 27 1 -0.3634 0.4279 0.9343 28 1 -0.3634 0.5951 -0.8378 29 1 -0.3633 -1.0232 -0.0966 30 1 1.7243 1.8661 -0.9322 31 1 1.5806 1.9211 0.8444 32 1 3.9339 0.6977 -0.6789 33 1 3.9383 2.3138 0.0757 34 1 4.5145 -0.9009 3.2985 35 1 3.2929 -2.9156 3.9866 36 1 2.2885 -4.3944 4.3936 37 1 -0.2628 -5.5802 4.6411 38 1 0.6959 -6.5463 3.4940 39 1 3.4836 -5.9993 4.9307 40 1 3.3496 -7.5222 5.8424 41 1 2.8473 -7.4594 4.1359 42 1 0.5343 -5.2737 6.9887 43 1 2.0611 -6.0218 7.5150 44 1 2.0866 -4.6503 6.3803 45 1 1.0189 -10.2584 7.9196 46 1 0.3701 -2.1738 0.9372 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590916555.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:30:45 Heat of formation + Delta-G solvation = -41.176146 kcal Electronic energy + Delta-G solvation = -26847.854629 eV Core-core repulsion = 23123.723466 eV Total energy + Delta-G solvation = -3724.131163 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.19957 -40.89146 -38.67259 -38.06853 -37.63702 -35.06324 -33.51916 -31.98310 -31.59652 -30.09170 -28.04431 -27.82833 -27.03976 -26.05837 -25.53160 -23.36759 -22.53719 -20.99589 -20.81604 -19.41477 -18.75404 -18.03834 -17.89680 -17.26521 -16.94690 -16.58414 -16.37305 -16.09828 -15.60966 -15.43584 -15.17030 -15.12798 -14.95995 -14.69338 -14.64467 -14.35554 -14.17502 -13.98039 -13.74174 -13.50651 -13.14440 -12.94393 -12.84390 -12.61855 -12.38385 -12.15532 -12.03238 -11.94297 -11.75799 -11.73115 -11.14687 -11.03096 -10.96875 -10.60998 -10.38199 -10.08419 -9.59900 -8.74222 -8.29109 -6.31081 -0.20692 0.23168 1.38265 1.39401 1.52694 1.74769 2.18318 2.20848 2.36239 2.57059 2.83900 3.07018 3.43658 3.61749 3.73666 3.96527 4.05593 4.08283 4.12108 4.20446 4.28607 4.32825 4.39310 4.42192 4.45708 4.63466 4.69290 4.75306 4.76942 4.82637 4.86827 4.87083 4.92090 4.96274 5.06195 5.07392 5.17629 5.27145 5.38417 5.43959 5.53378 5.72599 5.76132 5.80509 5.86416 6.29610 6.30825 6.59471 6.73608 7.22978 7.33852 8.88157 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.028389 B = 0.002790 C = 0.002605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.073651 B =10032.527184 C =10744.821457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.501 5.501 3 C 0.011 3.989 4 C 0.051 3.949 5 O -0.319 6.319 6 C 0.106 3.894 7 C -0.128 4.128 8 C -0.071 4.071 9 C -0.152 4.152 10 C 0.553 3.447 11 O -0.589 6.589 12 N -0.703 5.703 13 C 0.157 3.843 14 C 0.028 3.972 15 C -0.143 4.143 16 C -0.149 4.149 17 C -0.518 4.518 18 H 0.027 0.973 19 C 0.016 3.984 20 N -0.947 5.947 21 Si 0.945 3.055 22 H -0.281 1.281 23 H -0.316 1.316 24 H -0.201 1.201 25 C -0.078 4.078 26 C 0.027 3.973 27 H 0.039 0.961 28 H 0.103 0.897 29 H 0.071 0.929 30 H 0.130 0.870 31 H 0.058 0.942 32 H 0.077 0.923 33 H 0.150 0.850 34 H 0.164 0.836 35 H 0.157 0.843 36 H 0.411 0.589 37 H 0.044 0.956 38 H 0.042 0.958 39 H 0.067 0.933 40 H 0.047 0.953 41 H 0.040 0.960 42 H 0.046 0.954 43 H 0.037 0.963 44 H 0.075 0.925 45 H 0.264 0.736 46 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.592 28.218 -12.759 32.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.217 5.217 3 C -0.115 4.115 4 C -0.024 4.024 5 O -0.233 6.233 6 C 0.058 3.942 7 C -0.147 4.147 8 C -0.090 4.090 9 C -0.156 4.156 10 C 0.342 3.658 11 O -0.472 6.472 12 N -0.355 5.355 13 C 0.033 3.967 14 C 0.027 3.973 15 C -0.200 4.200 16 C -0.205 4.205 17 C -0.557 4.557 18 H 0.045 0.955 19 C -0.182 4.182 20 N -0.586 5.586 21 Si 0.774 3.226 22 H -0.209 1.209 23 H -0.245 1.245 24 H -0.124 1.124 25 C -0.099 4.099 26 C -0.071 4.071 27 H 0.057 0.943 28 H 0.122 0.878 29 H 0.090 0.910 30 H 0.148 0.852 31 H 0.076 0.924 32 H 0.095 0.905 33 H 0.168 0.832 34 H 0.182 0.818 35 H 0.174 0.826 36 H 0.250 0.750 37 H 0.063 0.937 38 H 0.060 0.940 39 H 0.086 0.914 40 H 0.066 0.934 41 H 0.059 0.941 42 H 0.065 0.935 43 H 0.055 0.945 44 H 0.094 0.906 45 H 0.073 0.927 46 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 9.139 27.777 -13.456 32.189 hybrid contribution -0.418 -0.477 1.258 1.409 sum 8.721 27.299 -12.199 31.146 Atomic orbital electron populations 1.22623 0.83518 1.03770 1.02530 1.58941 1.10274 1.13920 1.38520 1.23014 0.96137 0.87345 1.05032 1.23525 0.94427 1.01226 0.83189 1.86197 1.59810 1.38485 1.38822 1.19096 0.91136 0.88323 0.95643 1.20648 1.02179 0.94066 0.97800 1.21253 0.92546 0.96308 0.98928 1.19596 0.98658 0.96640 1.00662 1.18591 0.84101 0.83509 0.79575 1.90729 1.27090 1.73272 1.56076 1.45937 1.29286 1.26061 1.34239 1.21091 0.94642 0.84572 0.96421 1.18654 0.93771 0.93013 0.91872 1.22242 0.96429 1.00746 1.00585 1.22314 1.01231 0.98869 0.98131 1.21024 1.11050 1.08087 1.15504 0.95497 1.25881 0.98820 0.94063 0.99389 1.70115 1.46916 1.10436 1.31179 0.86331 0.80625 0.76896 0.78761 1.20853 1.24546 1.12429 1.20970 0.99918 0.93137 0.95924 1.18880 0.96339 0.97402 0.94453 0.94281 0.87814 0.91031 0.85218 0.92358 0.90482 0.83239 0.81848 0.82568 0.75016 0.93723 0.93974 0.91385 0.93420 0.94093 0.93450 0.94486 0.90637 0.92672 0.85047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 8.93 127.69 1.14 1.46 16 2 N -0.50 -8.73 4.89 -719.23 -3.52 -12.25 16 3 C 0.01 0.11 5.72 86.47 0.49 0.61 16 4 C 0.05 0.52 7.25 72.12 0.52 1.04 16 5 O -0.32 -5.51 10.39 -93.62 -0.97 -6.48 16 6 C 0.11 2.17 6.49 22.72 0.15 2.32 16 7 C -0.13 -2.35 9.91 22.34 0.22 -2.13 16 8 C -0.07 -1.44 9.53 22.49 0.21 -1.22 16 9 C -0.15 -4.10 5.87 -20.14 -0.12 -4.22 16 10 C 0.55 18.88 7.76 86.72 0.67 19.55 16 11 O -0.59 -25.07 16.33 -3.97 -0.06 -25.13 16 12 N -0.70 -22.53 4.95 -466.20 -2.31 -24.84 16 13 C 0.16 6.37 4.49 86.38 0.39 6.76 16 14 C 0.03 1.19 0.50 -52.93 -0.03 1.16 16 15 C -0.14 -5.38 7.53 71.98 0.54 -4.84 16 16 C -0.15 -5.51 7.52 71.98 0.54 -4.96 16 17 C -0.52 -28.76 8.62 25.60 0.22 -28.54 16 18 H 0.03 1.70 7.99 -2.91 -0.02 1.68 16 19 C 0.02 0.90 5.32 84.66 0.45 1.35 16 20 N -0.95 -59.06 13.96 21.45 0.30 -58.76 16 21 Si 0.94 42.46 22.79 68.60 1.56 44.02 16 22 H -0.28 -12.38 7.10 99.48 0.71 -11.68 16 23 H -0.32 -14.69 7.11 99.48 0.71 -13.98 16 24 H -0.20 -7.50 4.65 99.48 0.46 -7.04 16 25 C -0.08 -2.04 8.61 22.70 0.20 -1.85 16 26 C 0.03 0.61 5.82 38.21 0.22 0.83 16 27 H 0.04 0.60 8.14 -2.39 -0.02 0.58 16 28 H 0.10 0.99 8.13 -2.39 -0.02 0.97 16 29 H 0.07 1.27 6.17 -2.38 -0.01 1.26 16 30 H 0.13 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.06 0.65 8.13 -2.39 -0.02 0.63 16 32 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.15 0.48 8.14 -2.39 -0.02 0.46 16 34 H 0.16 2.14 8.06 -2.91 -0.02 2.12 16 35 H 0.16 2.36 6.40 -2.91 -0.02 2.34 16 36 H 0.41 10.34 4.28 -92.71 -0.40 9.94 16 37 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 38 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 39 H 0.07 1.94 7.13 -2.39 -0.02 1.92 16 40 H 0.05 1.89 4.30 -2.39 -0.01 1.88 16 41 H 0.04 1.58 8.12 -2.39 -0.02 1.57 16 42 H 0.05 1.81 8.14 -2.38 -0.02 1.79 16 43 H 0.04 1.42 2.25 -2.38 -0.01 1.41 16 44 H 0.07 2.10 6.86 -2.39 -0.02 2.09 16 45 H 0.26 15.52 8.31 -92.71 -0.77 14.75 16 46 H 0.13 3.69 5.59 -2.91 -0.02 3.68 16 Total: -1.00 -75.70 350.76 1.20 -74.50 By element: Atomic # 1 Polarization: 21.24 SS G_CDS: 0.37 Total: 21.61 kcal Atomic # 6 Polarization: -18.51 SS G_CDS: 5.83 Total: -12.68 kcal Atomic # 7 Polarization: -90.32 SS G_CDS: -5.53 Total: -95.85 kcal Atomic # 8 Polarization: -30.58 SS G_CDS: -1.04 Total: -31.61 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 1.56 Total: 44.02 kcal Total: -75.70 1.20 -74.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590916555.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.328 kcal (2) G-P(sol) polarization free energy of solvation -75.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds