Wall clock time and date at job start Tue Mar 31 2020 12:33:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.46966 * 2 1 4 4 C 1.50701 * 109.47225 * 239.99961 * 2 1 3 5 5 H 1.07995 * 120.00078 * 240.00054 * 4 2 1 6 6 C 1.37880 * 119.99788 * 59.99892 * 4 2 1 7 7 N 1.31513 * 120.00142 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 120.00037 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47004 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.46934 * 120.00035 * 8 6 4 11 11 H 1.48497 * 109.47294 * 240.00145 * 8 6 4 12 12 C 1.52998 * 109.46964 * 120.00127 * 2 1 3 13 13 N 1.46502 * 109.47291 * 299.99906 * 12 2 1 14 14 C 1.34771 * 119.99985 * 180.02562 * 13 12 2 15 15 O 1.21583 * 120.00116 * 355.05704 * 14 13 12 16 16 N 1.34781 * 119.99796 * 175.05952 * 14 13 12 17 17 C 1.46384 * 119.79799 * 184.96763 * 16 14 13 18 18 C 1.52639 * 110.96219 * 116.40877 * 17 16 14 19 19 O 1.43226 * 110.13640 * 61.49299 * 18 17 16 20 20 C 1.35635 * 115.82052 * 270.57301 * 19 18 17 21 21 C 1.38832 * 120.20652 * 253.12262 * 20 19 18 22 22 C 1.38135 * 119.83966 * 175.10139 * 21 20 19 23 23 C 1.38293 * 120.32305 * 0.06267 * 22 21 20 24 24 C 1.38433 * 119.99109 * 0.88652 * 23 22 21 25 25 C 1.37710 * 119.69319 * 359.78783 * 24 23 22 26 26 C 1.46654 * 119.80045 * 5.23536 * 16 14 13 27 27 H 1.08999 * 109.47274 * 299.99710 * 1 2 3 28 28 H 1.09002 * 109.47377 * 60.00292 * 1 2 3 29 29 H 1.09007 * 109.46679 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47002 * 180.02562 * 3 2 1 31 31 H 1.09005 * 109.47329 * 300.00035 * 3 2 1 32 32 H 1.08999 * 109.46887 * 60.00053 * 3 2 1 33 33 H 0.97005 * 119.99975 * 179.97438 * 7 6 4 34 34 H 1.08997 * 109.47310 * 60.00530 * 12 2 1 35 35 H 1.09008 * 109.46654 * 180.02562 * 12 2 1 36 36 H 0.97002 * 119.99639 * 0.02562 * 13 12 2 37 37 H 1.08997 * 109.13013 * 236.87265 * 17 16 14 38 38 H 1.09005 * 109.12917 * 355.97380 * 17 16 14 39 39 H 1.09002 * 109.46927 * 301.23360 * 18 17 16 40 40 H 1.08996 * 109.17287 * 181.56208 * 18 17 16 41 41 H 1.07996 * 120.08420 * 355.10797 * 21 20 19 42 42 H 1.07995 * 119.83594 * 180.08253 * 22 21 20 43 43 H 1.07998 * 120.00414 * 180.86595 * 23 22 21 44 44 H 1.07999 * 120.15466 * 179.80259 * 24 23 22 45 45 H 1.09000 * 109.59038 * 19.99980 * 26 16 14 46 46 H 1.09001 * 109.59358 * 140.28837 * 26 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9435 0.8302 -2.6034 8 14 2.3225 -1.1195 -4.0080 9 1 3.1474 -2.2862 -3.6039 10 1 1.1677 -1.5865 -4.8166 11 1 3.1472 -0.1857 -4.8161 12 6 2.0400 -0.7213 1.2492 13 7 1.5516 -0.0307 2.4454 14 6 1.8776 -0.4909 3.6695 15 8 2.5009 -1.5287 3.7827 16 7 1.5127 0.1993 4.7681 17 6 1.9614 -0.2450 6.0887 18 6 2.8634 0.8005 6.7393 19 8 2.1436 2.0245 6.9269 20 6 2.1938 2.9035 5.8951 21 6 2.9564 4.0590 5.9983 22 6 3.0840 4.8979 4.9083 23 6 2.4547 4.5931 3.7152 24 6 1.6775 3.4520 3.6146 25 6 1.5390 2.6226 4.7052 26 6 0.6636 1.3875 4.6338 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0278 -0.0005 30 1 3.1299 1.4425 -0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 0.7095 1.1618 -3.4845 34 1 1.6767 -1.7489 1.2492 35 1 3.1300 -0.7208 1.2494 36 1 0.9937 0.7578 2.3564 37 1 1.0915 -0.4146 6.7232 38 1 2.5127 -1.1794 5.9830 39 1 3.7270 0.9838 6.1000 40 1 3.2022 0.4291 7.7064 41 1 3.4488 4.3013 6.9284 42 1 3.6783 5.7961 4.9883 43 1 2.5693 5.2454 2.8621 44 1 1.1823 3.2131 2.6850 45 1 0.1468 1.3608 3.6744 46 1 -0.0674 1.4077 5.4421 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590949419.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:33:00 Heat of formation + Delta-G solvation = -46.685269 kcal Electronic energy + Delta-G solvation = -27977.954286 eV Core-core repulsion = 24253.584229 eV Total energy + Delta-G solvation = -3724.370056 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.97554 -40.63253 -38.58699 -38.12837 -36.63569 -35.06223 -33.08159 -32.63614 -31.58775 -29.74830 -27.57855 -27.48746 -27.34967 -26.64689 -24.28508 -23.26231 -22.39364 -21.09925 -20.64972 -19.63579 -18.71450 -17.85624 -17.51488 -17.05634 -16.86988 -16.55029 -16.42620 -16.16860 -15.58392 -15.32705 -15.23975 -14.88307 -14.71549 -14.56110 -14.22271 -14.01193 -13.79558 -13.23796 -13.16143 -13.11809 -12.99846 -12.82531 -12.66686 -12.57505 -12.47682 -12.25317 -12.13213 -12.00792 -11.49382 -11.39862 -11.14087 -11.10668 -10.70081 -10.39944 -10.19266 -9.88094 -9.59795 -9.48769 -8.01732 -6.16843 0.14995 0.34001 1.41970 1.46345 1.55163 1.65378 2.08038 2.40359 2.46896 2.89037 3.14103 3.22173 3.62229 3.74701 3.94625 4.07608 4.11797 4.23070 4.24367 4.39260 4.47420 4.47953 4.51861 4.54670 4.62023 4.70214 4.79991 4.83123 4.97860 4.98382 5.04998 5.11555 5.19456 5.36491 5.38772 5.43543 5.46700 5.55022 5.59653 5.67087 5.68347 5.77138 5.85888 6.14870 6.21343 6.44144 6.47497 6.86664 6.92570 7.50543 7.51484 8.97484 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.017817 B = 0.003799 C = 0.003344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1571.131142 B = 7368.385030 C = 8371.346776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.052 3.948 3 C -0.115 4.115 4 C -0.527 4.527 5 H 0.043 0.957 6 C 0.031 3.969 7 N -0.897 5.897 8 Si 0.944 3.056 9 H -0.277 1.277 10 H -0.281 1.281 11 H -0.281 1.281 12 C 0.166 3.834 13 N -0.724 5.724 14 C 0.699 3.301 15 O -0.634 6.634 16 N -0.624 5.624 17 C 0.094 3.906 18 C 0.057 3.943 19 O -0.332 6.332 20 C 0.091 3.909 21 C -0.142 4.142 22 C -0.101 4.101 23 C -0.132 4.132 24 C -0.101 4.101 25 C -0.151 4.151 26 C 0.154 3.846 27 H 0.032 0.968 28 H 0.065 0.935 29 H 0.017 0.983 30 H 0.016 0.984 31 H 0.064 0.936 32 H 0.033 0.967 33 H 0.260 0.740 34 H 0.036 0.964 35 H 0.034 0.966 36 H 0.402 0.598 37 H 0.096 0.904 38 H 0.095 0.905 39 H 0.046 0.954 40 H 0.142 0.858 41 H 0.145 0.855 42 H 0.153 0.847 43 H 0.143 0.857 44 H 0.129 0.871 45 H 0.088 0.912 46 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.336 8.997 18.312 20.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.052 3.948 3 C -0.173 4.173 4 C -0.566 4.566 5 H 0.062 0.938 6 C -0.169 4.169 7 N -0.536 5.536 8 Si 0.771 3.229 9 H -0.201 1.201 10 H -0.207 1.207 11 H -0.207 1.207 12 C 0.042 3.958 13 N -0.381 5.381 14 C 0.400 3.600 15 O -0.516 6.516 16 N -0.360 5.360 17 C -0.029 4.029 18 C -0.019 4.019 19 O -0.249 6.249 20 C 0.047 3.953 21 C -0.160 4.160 22 C -0.119 4.119 23 C -0.149 4.149 24 C -0.119 4.119 25 C -0.153 4.153 26 C 0.031 3.969 27 H 0.051 0.949 28 H 0.083 0.917 29 H 0.037 0.963 30 H 0.035 0.965 31 H 0.083 0.917 32 H 0.052 0.948 33 H 0.070 0.930 34 H 0.054 0.946 35 H 0.053 0.947 36 H 0.240 0.760 37 H 0.115 0.885 38 H 0.113 0.887 39 H 0.065 0.935 40 H 0.159 0.841 41 H 0.162 0.838 42 H 0.171 0.829 43 H 0.161 0.839 44 H 0.147 0.853 45 H 0.107 0.893 46 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 0.612 8.357 18.413 20.230 hybrid contribution 0.163 -0.363 -1.437 1.491 sum 0.775 7.994 16.977 18.780 Atomic orbital electron populations 1.21655 0.97113 0.98656 1.00201 1.18362 0.93228 0.93159 0.90099 1.21633 0.97786 0.97671 1.00213 1.21262 1.31682 1.12131 0.91477 0.93831 1.25409 0.95111 0.95575 1.00811 1.69901 1.36974 1.23203 1.23537 0.85726 0.78127 0.78737 0.80319 1.20138 1.20743 1.20690 1.21172 0.96580 0.94824 0.83263 1.45387 1.55582 1.33129 1.03979 1.16159 0.79487 0.82962 0.81388 1.90835 1.48619 1.25875 1.86230 1.47115 1.54353 1.28966 1.05563 1.22025 1.00603 0.98573 0.81737 1.23348 0.92847 0.82491 1.03175 1.86082 1.72641 1.28290 1.37867 1.18756 0.97163 0.92057 0.87315 1.21522 0.98377 0.95640 1.00492 1.21386 0.98759 0.99835 0.91935 1.21530 0.97225 0.97217 0.98971 1.21115 0.98687 0.94676 0.97443 1.20825 1.01567 0.98543 0.94336 1.20708 0.91338 0.80546 1.04286 0.94917 0.91653 0.96334 0.96492 0.91678 0.94768 0.93010 0.94570 0.94745 0.75966 0.88548 0.88655 0.93517 0.84080 0.83769 0.82896 0.83945 0.85277 0.89350 0.87269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.24 8.08 71.98 0.58 -4.66 16 2 C 0.05 2.41 0.50 -52.93 -0.03 2.39 16 3 C -0.12 -5.05 8.08 71.98 0.58 -4.46 16 4 C -0.53 -27.81 8.01 25.60 0.21 -27.60 16 5 H 0.04 2.37 7.74 -2.91 -0.02 2.34 16 6 C 0.03 1.61 5.15 84.66 0.44 2.04 16 7 N -0.90 -47.11 9.35 21.45 0.20 -46.91 16 8 Si 0.94 42.39 29.54 68.60 2.03 44.42 16 9 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 10 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 11 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 12 C 0.17 7.26 4.51 86.38 0.39 7.65 16 13 N -0.72 -26.40 4.83 -478.53 -2.31 -28.71 16 14 C 0.70 25.51 8.26 179.05 1.48 26.99 16 15 O -0.63 -27.88 15.66 -3.98 -0.06 -27.95 16 16 N -0.62 -17.28 2.69 -843.19 -2.26 -19.55 16 17 C 0.09 2.10 6.29 86.28 0.54 2.64 16 18 C 0.06 1.09 6.68 71.86 0.48 1.57 16 19 O -0.33 -7.20 9.90 -89.48 -0.89 -8.08 16 20 C 0.09 2.08 5.62 22.52 0.13 2.21 16 21 C -0.14 -2.77 10.00 22.39 0.22 -2.55 16 22 C -0.10 -1.79 10.03 22.26 0.22 -1.57 16 23 C -0.13 -2.64 10.06 22.33 0.22 -2.41 16 24 C -0.10 -2.32 9.71 22.19 0.22 -2.11 16 25 C -0.15 -3.57 5.48 -19.61 -0.11 -3.68 16 26 C 0.15 3.55 5.49 85.88 0.47 4.02 16 27 H 0.03 1.21 6.86 -2.39 -0.02 1.19 16 28 H 0.06 3.19 6.07 -2.39 -0.01 3.18 16 29 H 0.02 0.81 8.14 -2.38 -0.02 0.79 16 30 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.06 3.15 6.07 -2.38 -0.01 3.13 16 32 H 0.03 1.24 6.28 -2.39 -0.02 1.23 16 33 H 0.26 13.13 8.31 -92.70 -0.77 12.36 16 34 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.03 1.61 8.14 -2.38 -0.02 1.59 16 36 H 0.40 12.97 3.75 -92.71 -0.35 12.63 16 37 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 38 H 0.10 2.43 6.86 -2.38 -0.02 2.41 16 39 H 0.05 1.06 7.88 -2.39 -0.02 1.04 16 40 H 0.14 1.73 8.14 -2.39 -0.02 1.72 16 41 H 0.14 2.24 8.06 -2.91 -0.02 2.21 16 42 H 0.15 1.81 8.06 -2.91 -0.02 1.78 16 43 H 0.14 2.36 8.06 -2.91 -0.02 2.33 16 44 H 0.13 2.93 7.43 -2.91 -0.02 2.91 16 45 H 0.09 1.99 5.82 -2.39 -0.01 1.98 16 46 H 0.11 2.13 8.14 -2.39 -0.02 2.11 16 Total: -1.00 -63.85 359.46 3.39 -60.47 By element: Atomic # 1 Polarization: 25.20 SS G_CDS: 0.64 Total: 25.84 kcal Atomic # 6 Polarization: -5.58 SS G_CDS: 6.05 Total: 0.47 kcal Atomic # 7 Polarization: -90.79 SS G_CDS: -4.38 Total: -95.17 kcal Atomic # 8 Polarization: -35.08 SS G_CDS: -0.95 Total: -36.03 kcal Atomic # 14 Polarization: 42.39 SS G_CDS: 2.03 Total: 44.42 kcal Total: -63.85 3.39 -60.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590949419.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.780 kcal (2) G-P(sol) polarization free energy of solvation -63.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds