Wall clock time and date at job start Tue Mar 31 2020 12:19:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47083 * 2 1 4 4 C 1.53000 * 109.47085 * 120.00157 * 2 1 3 5 5 H 1.08995 * 109.47266 * 296.03801 * 4 2 1 6 6 C 1.50698 * 109.47107 * 176.03814 * 4 2 1 7 7 O 1.21288 * 120.00117 * 328.37315 * 6 4 2 8 8 N 1.34777 * 120.00027 * 148.37553 * 6 4 2 9 9 C 1.47419 * 125.64945 * 355.01525 * 8 6 4 10 10 C 1.54898 * 104.83608 * 155.90780 * 9 8 6 11 11 C 1.55159 * 101.58070 * 37.00686 * 10 9 8 12 12 O 1.42897 * 110.71767 * 82.86671 * 11 10 9 13 13 C 1.50710 * 110.71992 * 205.95750 * 11 10 9 14 14 H 1.08001 * 119.99616 * 116.15954 * 13 11 10 15 15 C 1.37877 * 120.00081 * 296.16149 * 13 11 10 16 16 N 1.31512 * 119.99683 * 359.97438 * 15 13 11 17 17 Si 1.86800 * 119.99887 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.46834 * 59.99953 * 17 15 13 19 19 H 1.48502 * 109.47099 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.47013 * 299.99768 * 17 15 13 21 21 C 1.47020 * 125.64850 * 175.05432 * 8 6 4 22 22 C 1.50698 * 109.46848 * 56.03775 * 4 2 1 23 23 C 1.38675 * 120.41752 * 239.72050 * 22 4 2 24 24 C 1.38628 * 118.41994 * 179.78674 * 23 22 4 25 25 C 1.38226 * 119.16262 * 0.46993 * 24 23 22 26 26 N 1.31855 * 120.76010 * 359.76897 * 25 24 23 27 27 C 1.31878 * 121.72878 * 0.02562 * 26 25 24 28 28 H 1.08999 * 109.47067 * 300.00028 * 1 2 3 29 29 H 1.08998 * 109.47050 * 59.99808 * 1 2 3 30 30 H 1.08996 * 109.47191 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.46859 * 240.00258 * 2 1 3 32 32 H 1.09005 * 109.46714 * 176.10623 * 3 2 1 33 33 H 1.08993 * 109.47191 * 296.10338 * 3 2 1 34 34 H 1.08999 * 109.46978 * 56.11266 * 3 2 1 35 35 H 1.09003 * 110.36927 * 37.06116 * 9 8 6 36 36 H 1.09000 * 110.36445 * 274.75084 * 9 8 6 37 37 H 1.09003 * 111.00770 * 278.93488 * 10 9 8 38 38 H 1.09002 * 111.01155 * 155.08437 * 10 9 8 39 39 H 0.96702 * 114.00849 * 61.45759 * 12 11 10 40 40 H 0.97010 * 119.99592 * 180.02562 * 16 15 13 41 41 H 1.09003 * 109.88492 * 61.60290 * 21 8 6 42 42 H 1.09003 * 109.88264 * 300.44487 * 21 8 6 43 43 H 1.07995 * 120.78854 * 0.02562 * 23 22 4 44 44 H 1.08003 * 120.42254 * 180.22425 * 24 23 22 45 45 H 1.08001 * 119.62027 * 179.79696 * 25 24 23 46 46 H 1.08004 * 119.62030 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.7358 -0.1682 2.1378 6 6 3.5438 -0.8069 1.2011 7 8 4.1124 -0.8943 0.1334 8 7 4.2568 -0.7863 2.3446 9 6 3.7066 -0.5807 3.6967 10 6 4.7360 -1.2397 4.6483 11 6 6.0757 -0.8903 3.9480 12 8 6.5017 0.4274 4.3004 13 6 7.1378 -1.9021 4.2937 14 1 7.5635 -2.5239 3.5200 15 6 7.5660 -2.0340 5.5977 16 7 7.0479 -1.2765 6.5396 17 14 8.8819 -3.2887 6.0262 18 1 10.1229 -2.9822 5.2703 19 1 9.1637 -3.2325 7.4832 20 1 8.4057 -4.6482 5.6657 21 6 5.7124 -0.9645 2.4501 22 6 1.4591 -2.1109 1.2992 23 6 0.6762 -2.5064 2.3733 24 6 0.1591 -3.7926 2.3746 25 6 0.4471 -4.6354 1.3176 26 7 1.1996 -4.2268 0.3149 27 6 1.7048 -3.0092 0.2783 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 3.1278 1.4432 0.0698 33 1 1.7348 1.9358 -0.9228 34 1 1.6209 1.9760 0.8531 35 1 2.7367 -1.0693 3.7900 36 1 3.6181 0.4841 3.9123 37 1 4.5896 -2.3189 4.6954 38 1 4.6880 -0.7969 5.6431 39 1 6.6682 0.5475 5.2453 40 1 7.3494 -1.3691 7.4570 41 1 6.2235 -0.1710 1.9049 42 1 5.9970 -1.9365 2.0472 43 1 0.4710 -1.8272 3.1875 44 1 -0.4577 -4.1333 3.1932 45 1 0.0508 -5.6401 1.3126 46 1 2.3173 -2.7103 -0.5596 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592851508.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:23 Heat of formation + Delta-G solvation = -80.060374 kcal Electronic energy + Delta-G solvation = -27951.355155 eV Core-core repulsion = 24225.537846 eV Total energy + Delta-G solvation = -3725.817309 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.92972 -40.65310 -39.19855 -37.01410 -36.13743 -34.19988 -33.55904 -32.50576 -31.50066 -30.21780 -28.69776 -27.93634 -26.76961 -24.65065 -24.12198 -23.42590 -21.93247 -21.15035 -19.97194 -19.19607 -18.35747 -18.12809 -17.13013 -16.97689 -16.92434 -16.69936 -16.17453 -16.01533 -15.50146 -15.22849 -14.85376 -14.61141 -14.50795 -14.23396 -13.98558 -13.86576 -13.53255 -13.43239 -13.30397 -13.21329 -13.13528 -13.02688 -12.84550 -12.67929 -12.46426 -12.29663 -12.13334 -11.98649 -11.86276 -11.63486 -11.30888 -11.07658 -10.69108 -10.59538 -10.41020 -10.16575 -9.88774 -9.64713 -8.27153 -6.40736 0.09964 0.33455 1.40585 1.42684 1.49477 1.56124 1.98747 2.38043 2.82506 2.98530 3.42595 3.46255 3.66931 3.74152 3.83173 3.95359 3.95994 4.05794 4.08490 4.20327 4.22899 4.36733 4.39741 4.48666 4.55658 4.62341 4.64409 4.68622 4.79916 4.83833 4.87827 4.96853 4.99885 5.13592 5.17901 5.18678 5.23131 5.26831 5.37080 5.43170 5.45242 5.49941 5.74164 5.76436 6.06011 6.55928 6.63240 7.00930 7.09965 7.29673 7.41323 8.79086 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.015091 B = 0.004133 C = 0.003632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1854.993353 B = 6772.951908 C = 7707.756356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.075 4.075 3 C -0.146 4.146 4 C -0.043 4.043 5 H 0.122 0.878 6 C 0.528 3.472 7 O -0.583 6.583 8 N -0.610 5.610 9 C 0.103 3.897 10 C -0.124 4.124 11 C 0.238 3.762 12 O -0.592 6.592 13 C -0.567 4.567 14 H 0.047 0.953 15 C 0.042 3.958 16 N -0.903 5.903 17 Si 0.955 3.045 18 H -0.279 1.279 19 H -0.274 1.274 20 H -0.275 1.275 21 C 0.129 3.871 22 C -0.125 4.125 23 C -0.067 4.067 24 C -0.160 4.160 25 C 0.082 3.918 26 N -0.514 5.514 27 C 0.091 3.909 28 H 0.074 0.926 29 H 0.068 0.932 30 H 0.048 0.952 31 H 0.062 0.938 32 H 0.027 0.973 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.098 0.902 36 H 0.076 0.924 37 H 0.054 0.946 38 H 0.081 0.919 39 H 0.381 0.619 40 H 0.273 0.727 41 H 0.041 0.959 42 H 0.052 0.948 43 H 0.167 0.833 44 H 0.173 0.827 45 H 0.180 0.820 46 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.752 0.579 -3.246 19.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.094 4.094 3 C -0.203 4.203 4 C -0.065 4.065 5 H 0.140 0.860 6 C 0.318 3.682 7 O -0.463 6.463 8 N -0.342 5.342 9 C -0.018 4.018 10 C -0.163 4.163 11 C 0.198 3.802 12 O -0.402 6.402 13 C -0.605 4.605 14 H 0.065 0.935 15 C -0.160 4.160 16 N -0.542 5.542 17 Si 0.781 3.219 18 H -0.205 1.205 19 H -0.199 1.199 20 H -0.200 1.200 21 C 0.006 3.994 22 C -0.127 4.127 23 C -0.093 4.093 24 C -0.179 4.179 25 C -0.074 4.074 26 N -0.223 5.223 27 C -0.065 4.065 28 H 0.093 0.907 29 H 0.087 0.913 30 H 0.068 0.932 31 H 0.080 0.920 32 H 0.046 0.954 33 H 0.090 0.910 34 H 0.092 0.908 35 H 0.116 0.884 36 H 0.095 0.905 37 H 0.073 0.927 38 H 0.100 0.900 39 H 0.232 0.768 40 H 0.083 0.917 41 H 0.060 0.940 42 H 0.070 0.930 43 H 0.184 0.816 44 H 0.190 0.810 45 H 0.197 0.803 46 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -18.378 0.094 -5.006 19.048 hybrid contribution 1.484 -0.256 1.303 1.992 sum -16.894 -0.161 -3.703 17.296 Atomic orbital electron populations 1.21760 0.92207 1.01869 1.03304 1.20993 0.97359 0.95885 0.95151 1.21839 0.99784 0.95410 1.03284 1.20336 0.88387 0.94510 1.03280 0.86024 1.20786 0.90281 0.75240 0.81881 1.90637 1.73258 1.52345 1.30081 1.48718 1.07983 1.69797 1.07692 1.22555 0.98016 1.01072 0.80186 1.23065 0.95033 0.99487 0.98736 1.19538 0.91584 0.81135 0.87955 1.86109 1.90190 1.32613 1.31254 1.21697 1.23615 1.20875 0.94300 0.93487 1.25510 0.97555 0.97166 0.95729 1.69674 1.42950 1.39806 1.01790 0.85663 0.79458 0.79457 0.77348 1.20474 1.19895 1.20024 1.21748 0.80702 0.99011 0.97930 1.20360 1.00198 0.95362 0.96827 1.21910 0.93547 0.97187 0.96618 1.22521 1.01035 0.93905 1.00482 1.23359 0.93466 1.01259 0.89351 1.67681 1.10108 1.16556 1.27906 1.22537 0.96710 0.89218 0.98035 0.90714 0.91318 0.93244 0.91985 0.95383 0.90985 0.90826 0.88385 0.90534 0.92693 0.90006 0.76830 0.91735 0.94023 0.92991 0.81588 0.80964 0.80302 0.84882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.22 8.89 71.98 0.64 -1.58 16 2 C -0.07 -1.72 1.99 -10.79 -0.02 -1.74 16 3 C -0.15 -3.29 9.04 71.98 0.65 -2.64 16 4 C -0.04 -1.09 1.43 -12.29 -0.02 -1.11 16 5 H 0.12 2.44 6.70 -2.39 -0.02 2.42 16 6 C 0.53 19.01 5.55 87.66 0.49 19.50 16 7 O -0.58 -25.18 15.73 -3.05 -0.05 -25.23 16 8 N -0.61 -23.43 3.33 -811.83 -2.70 -26.13 16 9 C 0.10 3.37 6.33 86.85 0.55 3.92 16 10 C -0.12 -5.12 5.56 31.98 0.18 -4.95 16 11 C 0.24 11.50 0.85 -10.35 -0.01 11.49 16 12 O -0.59 -29.71 13.06 -148.98 -1.95 -31.65 16 13 C -0.57 -30.19 8.22 25.60 0.21 -29.98 16 14 H 0.05 2.58 7.56 -2.91 -0.02 2.56 16 15 C 0.04 2.15 5.29 84.65 0.45 2.60 16 16 N -0.90 -45.19 10.69 21.45 0.23 -44.96 16 17 Si 0.96 41.29 29.54 68.60 2.03 43.31 16 18 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 19 H -0.27 -11.30 7.11 99.48 0.71 -10.60 16 20 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 21 C 0.13 6.02 6.23 86.73 0.54 6.56 16 22 C -0.12 -3.06 3.33 -19.77 -0.07 -3.12 16 23 C -0.07 -1.22 9.74 22.47 0.22 -1.01 16 24 C -0.16 -2.63 10.11 22.36 0.23 -2.40 16 25 C 0.08 1.71 11.18 84.69 0.95 2.66 16 26 N -0.51 -14.62 10.36 -195.84 -2.03 -16.65 16 27 C 0.09 2.69 10.04 84.67 0.85 3.54 16 28 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.05 0.88 7.10 -2.39 -0.02 0.87 16 31 H 0.06 1.71 7.13 -2.38 -0.02 1.70 16 32 H 0.03 0.81 6.93 -2.38 -0.02 0.79 16 33 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.10 2.43 7.24 -2.39 -0.02 2.41 16 36 H 0.08 2.34 8.14 -2.39 -0.02 2.33 16 37 H 0.05 2.36 8.04 -2.39 -0.02 2.34 16 38 H 0.08 3.45 7.64 -2.39 -0.02 3.43 16 39 H 0.38 19.02 7.28 -74.06 -0.54 18.48 16 40 H 0.27 13.00 8.31 -92.70 -0.77 12.23 16 41 H 0.04 2.05 8.07 -2.39 -0.02 2.04 16 42 H 0.05 2.56 7.66 -2.39 -0.02 2.54 16 43 H 0.17 1.97 8.00 -2.91 -0.02 1.94 16 44 H 0.17 1.54 8.06 -2.91 -0.02 1.51 16 45 H 0.18 2.57 8.06 -2.91 -0.02 2.55 16 46 H 0.13 4.40 7.33 -2.91 -0.02 4.38 16 Total: -1.00 -65.45 369.61 1.81 -63.65 By element: Atomic # 1 Polarization: 35.49 SS G_CDS: 0.44 Total: 35.93 kcal Atomic # 6 Polarization: -4.10 SS G_CDS: 5.83 Total: 1.73 kcal Atomic # 7 Polarization: -83.25 SS G_CDS: -4.50 Total: -87.75 kcal Atomic # 8 Polarization: -54.89 SS G_CDS: -1.99 Total: -56.88 kcal Atomic # 14 Polarization: 41.29 SS G_CDS: 2.03 Total: 43.31 kcal Total: -65.45 1.81 -63.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592851508.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.412 kcal (2) G-P(sol) polarization free energy of solvation -65.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds