Wall clock time and date at job start Tue Mar 31 2020 12:34:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.46947 * 2 1 4 4 C 1.50700 * 109.47347 * 239.99770 * 2 1 3 5 5 H 1.08001 * 119.99931 * 239.99964 * 4 2 1 6 6 C 1.37879 * 120.00024 * 59.99764 * 4 2 1 7 7 N 1.31520 * 119.99682 * 0.02562 * 6 4 2 8 8 Si 1.86792 * 120.00075 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.47340 * 90.00237 * 8 6 4 10 10 H 1.48496 * 109.47423 * 210.00189 * 8 6 4 11 11 H 1.48500 * 109.47197 * 330.00272 * 8 6 4 12 12 C 1.53002 * 109.46997 * 119.99670 * 2 1 3 13 13 N 1.46492 * 109.47380 * 300.00348 * 12 2 1 14 14 C 1.34775 * 120.00372 * 180.02562 * 13 12 2 15 15 O 1.21585 * 119.99564 * 359.97438 * 14 13 12 16 16 N 1.34775 * 120.00073 * 180.02562 * 14 13 12 17 17 C 1.46506 * 120.00084 * 179.97438 * 16 14 13 18 18 H 1.08998 * 110.26642 * 324.38285 * 17 16 14 19 19 C 1.54337 * 110.38815 * 202.24515 * 17 16 14 20 20 C 1.54342 * 102.39830 * 214.66434 * 19 17 16 21 21 C 1.51393 * 105.17281 * 26.37339 * 20 19 17 22 22 C 1.38545 * 130.32120 * 162.82096 * 21 20 19 23 23 C 1.37999 * 120.28792 * 179.73344 * 22 21 20 24 24 C 1.38753 * 119.88095 * 0.51688 * 23 22 21 25 25 O 1.35896 * 120.09476 * 179.74104 * 24 23 22 26 26 C 1.38594 * 119.81114 * 359.46771 * 24 23 22 27 27 C 1.38264 * 109.73841 * 342.79444 * 21 20 19 28 28 H 1.08999 * 109.47148 * 300.00048 * 1 2 3 29 29 H 1.08997 * 109.47115 * 60.00511 * 1 2 3 30 30 H 1.09002 * 109.46818 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46794 * 179.97438 * 3 2 1 32 32 H 1.09005 * 109.47130 * 299.99650 * 3 2 1 33 33 H 1.08999 * 109.47236 * 60.00005 * 3 2 1 34 34 H 0.97001 * 119.99405 * 179.97438 * 7 6 4 35 35 H 1.08998 * 109.47115 * 179.97438 * 12 2 1 36 36 H 1.09002 * 109.46789 * 60.00048 * 12 2 1 37 37 H 0.97012 * 119.99925 * 359.97438 * 13 12 2 38 38 H 0.96998 * 120.00224 * 359.97438 * 16 14 13 39 39 H 1.08997 * 110.82306 * 332.89611 * 19 17 16 40 40 H 1.09005 * 110.81505 * 96.24123 * 19 17 16 41 41 H 1.08998 * 110.30010 * 145.29608 * 20 19 17 42 42 H 1.08998 * 110.30290 * 267.44609 * 20 19 17 43 43 H 1.07998 * 119.85343 * 359.94906 * 22 21 20 44 44 H 1.08003 * 120.05904 * 180.28075 * 23 22 21 45 45 H 0.96700 * 114.00170 * 269.72636 * 25 24 23 46 46 H 1.08007 * 119.91116 * 180.25350 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6534 -1.5885 -1.1312 6 6 1.6993 -0.2395 -2.4827 7 7 0.9436 0.8301 -2.6034 8 14 2.3226 -1.1196 -4.0078 9 1 1.3450 -2.1617 -4.4123 10 1 2.4874 -0.1404 -5.1120 11 1 3.6310 -1.7566 -3.7118 12 6 2.0400 -0.7212 1.2493 13 7 1.5517 -0.0306 2.4454 14 6 1.8776 -0.4907 3.6695 15 8 2.5767 -1.4792 3.7811 16 7 1.4279 0.1443 4.7699 17 6 1.7817 -0.3561 6.1006 18 1 1.8231 -1.4453 6.0957 19 6 0.7619 0.1365 7.1490 20 6 1.6443 0.3424 8.3985 21 6 3.0325 0.6195 7.8618 22 6 4.1383 1.1785 8.4818 23 6 5.3214 1.3323 7.7883 24 6 5.4014 0.9354 6.4612 25 8 6.5628 1.0897 5.7726 26 6 4.2951 0.3759 5.8415 27 6 3.1114 0.2179 6.5411 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8901 33 1 1.6767 1.9563 0.8900 34 1 0.7096 1.1616 -3.4845 35 1 3.1300 -0.7216 1.2491 36 1 1.6766 -1.7489 1.2493 37 1 0.9942 0.7583 2.3564 38 1 0.8699 0.9328 4.6809 39 1 0.3079 1.0767 6.8361 40 1 -0.0023 -0.6192 7.3309 41 1 1.2862 1.1931 8.9783 42 1 1.6486 -0.5590 9.0112 43 1 4.0750 1.4920 9.5133 44 1 6.1824 1.7643 8.2766 45 1 6.6382 1.9375 5.3136 46 1 4.3568 0.0627 4.8097 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596623537.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:34:24 Heat of formation + Delta-G solvation = -54.522118 kcal Electronic energy + Delta-G solvation = -26781.471608 eV Core-core repulsion = 23056.761721 eV Total energy + Delta-G solvation = -3724.709888 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.73027 -39.34355 -37.94688 -36.42879 -35.15269 -33.37345 -32.98648 -31.11985 -30.52868 -28.46649 -26.75112 -25.71828 -25.45959 -24.51875 -22.98245 -21.40977 -21.07802 -20.48922 -18.77850 -18.22504 -17.98728 -16.54799 -16.22643 -15.79181 -15.52481 -15.30574 -14.88849 -14.77703 -14.59785 -14.07576 -13.62787 -13.57796 -13.33080 -12.91872 -12.84353 -12.64121 -12.19474 -12.14948 -11.97102 -11.87489 -11.53220 -11.37696 -11.18951 -11.08458 -10.85975 -10.68195 -10.61546 -10.37636 -10.20167 -9.78445 -9.62298 -9.30298 -9.03928 -8.91466 -8.78275 -8.51223 -8.40961 -8.19915 -6.01553 -4.11321 1.07534 1.22922 3.06653 3.29090 3.36037 3.40682 3.48282 3.62093 4.01033 4.24367 4.38906 4.41266 4.70906 4.74202 4.89694 4.93887 5.01002 5.19177 5.25371 5.41992 5.46320 5.57177 5.62306 5.74111 5.84991 5.95784 6.17301 6.22114 6.34941 6.37648 6.45946 6.51497 6.62309 6.72410 6.81107 6.83248 6.91438 7.03881 7.10554 7.30580 7.42184 7.56619 7.57274 7.70694 8.01920 8.13361 8.39057 8.48740 8.88691 9.04870 9.54479 10.99890 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.019769 B = 0.002899 C = 0.002666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.026819 B = 9656.703699 C =10498.758876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.056 3.944 3 C -0.129 4.129 4 C -0.505 4.505 5 H 0.058 0.942 6 C 0.066 3.934 7 N -0.887 5.887 8 Si 0.893 3.107 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.274 1.274 12 C 0.151 3.849 13 N -0.733 5.733 14 C 0.696 3.304 15 O -0.596 6.596 16 N -0.746 5.746 17 C 0.204 3.796 18 H 0.104 0.896 19 C -0.124 4.124 20 C -0.077 4.077 21 C -0.107 4.107 22 C -0.097 4.097 23 C -0.144 4.144 24 C 0.100 3.900 25 O -0.498 6.498 26 C -0.107 4.107 27 C -0.088 4.088 28 H 0.005 0.995 29 H 0.085 0.915 30 H 0.026 0.974 31 H 0.026 0.974 32 H 0.085 0.915 33 H 0.005 0.995 34 H 0.259 0.741 35 H 0.052 0.948 36 H 0.052 0.948 37 H 0.393 0.607 38 H 0.394 0.606 39 H 0.080 0.920 40 H 0.086 0.914 41 H 0.078 0.922 42 H 0.084 0.916 43 H 0.123 0.877 44 H 0.128 0.872 45 H 0.390 0.610 46 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.302 5.152 21.759 22.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.056 3.944 3 C -0.187 4.187 4 C -0.544 4.544 5 H 0.076 0.924 6 C -0.135 4.135 7 N -0.525 5.525 8 Si 0.721 3.279 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.199 1.199 12 C 0.028 3.972 13 N -0.387 5.387 14 C 0.396 3.604 15 O -0.475 6.475 16 N -0.402 5.402 17 C 0.098 3.902 18 H 0.121 0.879 19 C -0.162 4.162 20 C -0.114 4.114 21 C -0.108 4.108 22 C -0.115 4.115 23 C -0.162 4.162 24 C 0.055 3.945 25 O -0.308 6.308 26 C -0.126 4.126 27 C -0.090 4.090 28 H 0.024 0.976 29 H 0.103 0.897 30 H 0.045 0.955 31 H 0.045 0.955 32 H 0.103 0.897 33 H 0.024 0.976 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.228 0.772 38 H 0.228 0.772 39 H 0.099 0.901 40 H 0.105 0.895 41 H 0.097 0.903 42 H 0.102 0.898 43 H 0.141 0.859 44 H 0.146 0.854 45 H 0.245 0.755 46 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 0.993 3.760 21.859 22.202 hybrid contribution -0.103 0.776 -1.209 1.440 sum 0.890 4.537 20.650 21.161 Atomic orbital electron populations 1.21819 0.97801 0.99148 0.99970 1.18356 0.92766 0.92747 0.90556 1.21813 0.98540 0.98381 0.99951 1.20999 1.31411 1.12086 0.89890 0.92407 1.24877 0.94881 0.94916 0.98843 1.69810 1.36802 1.22742 1.23182 0.86572 0.79365 0.79378 0.82568 1.20721 1.21291 1.19870 1.21577 0.97848 0.95415 0.82405 1.45520 1.55575 1.32987 1.04598 1.16120 0.80521 0.83017 0.80722 1.90900 1.42876 1.27679 1.86003 1.45211 1.57328 1.33285 1.04349 1.20249 0.89389 0.99533 0.81050 0.87855 1.22595 0.97276 1.02420 0.93923 1.20984 0.90566 1.02379 0.97472 1.20546 0.95868 0.99519 0.94818 1.20399 0.91587 0.99886 0.99656 1.21276 0.98157 1.02246 0.94538 1.18349 0.85477 0.99694 0.90941 1.84835 1.35554 1.42076 1.68314 1.21045 0.90972 0.99244 1.01306 1.20816 0.95455 0.98458 0.94284 0.97568 0.89671 0.95463 0.95497 0.89666 0.97606 0.93044 0.93006 0.92974 0.77233 0.77181 0.90147 0.89527 0.90328 0.89783 0.85893 0.85434 0.75471 0.85103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.91 8.08 37.16 0.30 -2.61 16 2 C 0.06 1.31 0.50 -155.66 -0.08 1.23 16 3 C -0.13 -2.90 8.08 37.16 0.30 -2.60 16 4 C -0.51 -13.29 8.01 -34.44 -0.28 -13.56 16 5 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 6 C 0.07 1.74 5.15 -17.82 -0.09 1.64 16 7 N -0.89 -23.60 9.35 55.43 0.52 -23.08 16 8 Si 0.89 20.80 29.54 -169.99 -5.02 15.78 16 9 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 10 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 12 C 0.15 3.23 4.50 -4.04 -0.02 3.22 16 13 N -0.73 -13.03 4.96 -65.23 -0.32 -13.35 16 14 C 0.70 12.18 8.01 -86.92 -0.70 11.48 16 15 O -0.60 -12.76 15.48 5.29 0.08 -12.68 16 16 N -0.75 -9.59 5.12 -58.79 -0.30 -9.89 16 17 C 0.20 2.40 3.17 -68.05 -0.22 2.18 16 18 H 0.10 1.41 7.64 -51.93 -0.40 1.02 16 19 C -0.12 -0.95 6.76 -25.33 -0.17 -1.13 16 20 C -0.08 -0.56 6.77 -26.84 -0.18 -0.74 16 21 C -0.11 -1.10 6.14 -104.16 -0.64 -1.74 16 22 C -0.10 -0.94 10.03 -39.56 -0.40 -1.34 16 23 C -0.14 -1.53 9.99 -39.48 -0.39 -1.93 16 24 C 0.10 1.29 6.70 -39.26 -0.26 1.03 16 25 O -0.50 -6.12 13.50 -19.41 -0.26 -6.38 16 26 C -0.11 -1.56 9.80 -39.39 -0.39 -1.94 16 27 C -0.09 -1.12 5.78 -104.21 -0.60 -1.73 16 28 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 29 H 0.08 2.11 6.07 -51.93 -0.32 1.80 16 30 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.08 2.12 6.07 -51.93 -0.32 1.80 16 33 H 0.00 0.10 6.86 -51.93 -0.36 -0.26 16 34 H 0.26 6.68 8.31 -40.82 -0.34 6.34 16 35 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.05 1.19 8.14 -51.93 -0.42 0.76 16 37 H 0.39 6.26 6.18 -40.81 -0.25 6.01 16 38 H 0.39 4.01 8.41 -40.82 -0.34 3.67 16 39 H 0.08 0.54 7.81 -51.93 -0.41 0.13 16 40 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 44 H 0.13 1.10 8.06 -52.48 -0.42 0.68 16 45 H 0.39 2.95 9.06 45.56 0.41 3.36 16 46 H 0.13 2.26 7.07 -52.48 -0.37 1.89 16 LS Contribution 367.94 15.07 5.54 5.54 Total: -1.00 -31.45 367.94 -9.62 -41.07 By element: Atomic # 1 Polarization: 17.58 SS G_CDS: -6.04 Total: 11.53 kcal Atomic # 6 Polarization: -4.72 SS G_CDS: -3.81 Total: -8.53 kcal Atomic # 7 Polarization: -46.23 SS G_CDS: -0.11 Total: -46.33 kcal Atomic # 8 Polarization: -18.88 SS G_CDS: -0.18 Total: -19.06 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -31.45 -9.62 -41.07 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596623537.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.454 kcal (2) G-P(sol) polarization free energy of solvation -31.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds