Wall clock time and date at job start Tue Mar 31 2020 12:34:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.46947 * 2 1 4 4 C 1.50700 * 109.47347 * 239.99770 * 2 1 3 5 5 H 1.08001 * 119.99931 * 239.99964 * 4 2 1 6 6 C 1.37879 * 120.00024 * 59.99764 * 4 2 1 7 7 N 1.31520 * 119.99682 * 0.02562 * 6 4 2 8 8 Si 1.86792 * 120.00075 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.47340 * 90.00237 * 8 6 4 10 10 H 1.48496 * 109.47423 * 210.00189 * 8 6 4 11 11 H 1.48500 * 109.47197 * 330.00272 * 8 6 4 12 12 C 1.53002 * 109.46997 * 119.99670 * 2 1 3 13 13 N 1.46492 * 109.47380 * 300.00348 * 12 2 1 14 14 C 1.34775 * 120.00372 * 180.02562 * 13 12 2 15 15 O 1.21585 * 119.99564 * 359.97438 * 14 13 12 16 16 N 1.34775 * 120.00073 * 180.02562 * 14 13 12 17 17 C 1.46506 * 120.00084 * 179.97438 * 16 14 13 18 18 H 1.08998 * 110.26642 * 324.38285 * 17 16 14 19 19 C 1.54337 * 110.38815 * 202.24515 * 17 16 14 20 20 C 1.54342 * 102.39830 * 214.66434 * 19 17 16 21 21 C 1.51393 * 105.17281 * 26.37339 * 20 19 17 22 22 C 1.38545 * 130.32120 * 162.82096 * 21 20 19 23 23 C 1.37999 * 120.28792 * 179.73344 * 22 21 20 24 24 C 1.38753 * 119.88095 * 0.51688 * 23 22 21 25 25 O 1.35896 * 120.09476 * 179.74104 * 24 23 22 26 26 C 1.38594 * 119.81114 * 359.46771 * 24 23 22 27 27 C 1.38264 * 109.73841 * 342.79444 * 21 20 19 28 28 H 1.08999 * 109.47148 * 300.00048 * 1 2 3 29 29 H 1.08997 * 109.47115 * 60.00511 * 1 2 3 30 30 H 1.09002 * 109.46818 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46794 * 179.97438 * 3 2 1 32 32 H 1.09005 * 109.47130 * 299.99650 * 3 2 1 33 33 H 1.08999 * 109.47236 * 60.00005 * 3 2 1 34 34 H 0.97001 * 119.99405 * 179.97438 * 7 6 4 35 35 H 1.08998 * 109.47115 * 179.97438 * 12 2 1 36 36 H 1.09002 * 109.46789 * 60.00048 * 12 2 1 37 37 H 0.97012 * 119.99925 * 359.97438 * 13 12 2 38 38 H 0.96998 * 120.00224 * 359.97438 * 16 14 13 39 39 H 1.08997 * 110.82306 * 332.89611 * 19 17 16 40 40 H 1.09005 * 110.81505 * 96.24123 * 19 17 16 41 41 H 1.08998 * 110.30010 * 145.29608 * 20 19 17 42 42 H 1.08998 * 110.30290 * 267.44609 * 20 19 17 43 43 H 1.07998 * 119.85343 * 359.94906 * 22 21 20 44 44 H 1.08003 * 120.05904 * 180.28075 * 23 22 21 45 45 H 0.96700 * 114.00170 * 269.72636 * 25 24 23 46 46 H 1.08007 * 119.91116 * 180.25350 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6534 -1.5885 -1.1312 6 6 1.6993 -0.2395 -2.4827 7 7 0.9436 0.8301 -2.6034 8 14 2.3226 -1.1196 -4.0078 9 1 1.3450 -2.1617 -4.4123 10 1 2.4874 -0.1404 -5.1120 11 1 3.6310 -1.7566 -3.7118 12 6 2.0400 -0.7212 1.2493 13 7 1.5517 -0.0306 2.4454 14 6 1.8776 -0.4907 3.6695 15 8 2.5767 -1.4792 3.7811 16 7 1.4279 0.1443 4.7699 17 6 1.7817 -0.3561 6.1006 18 1 1.8231 -1.4453 6.0957 19 6 0.7619 0.1365 7.1490 20 6 1.6443 0.3424 8.3985 21 6 3.0325 0.6195 7.8618 22 6 4.1383 1.1785 8.4818 23 6 5.3214 1.3323 7.7883 24 6 5.4014 0.9354 6.4612 25 8 6.5628 1.0897 5.7726 26 6 4.2951 0.3759 5.8415 27 6 3.1114 0.2179 6.5411 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8901 33 1 1.6767 1.9563 0.8900 34 1 0.7096 1.1616 -3.4845 35 1 3.1300 -0.7216 1.2491 36 1 1.6766 -1.7489 1.2493 37 1 0.9942 0.7583 2.3564 38 1 0.8699 0.9328 4.6809 39 1 0.3079 1.0767 6.8361 40 1 -0.0023 -0.6192 7.3309 41 1 1.2862 1.1931 8.9783 42 1 1.6486 -0.5590 9.0112 43 1 4.0750 1.4920 9.5133 44 1 6.1824 1.7643 8.2766 45 1 6.6382 1.9375 5.3136 46 1 4.3568 0.0627 4.8097 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596623537.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:34:23 Heat of formation + Delta-G solvation = -76.228366 kcal Electronic energy + Delta-G solvation = -26782.412862 eV Core-core repulsion = 23056.761721 eV Total energy + Delta-G solvation = -3725.651141 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.70846 -40.63422 -38.93268 -38.11861 -36.15873 -35.01446 -34.15779 -32.65505 -31.72600 -29.28775 -27.85353 -27.56913 -27.32500 -26.14868 -23.79238 -22.48880 -21.91612 -21.70625 -20.59147 -19.52774 -19.02895 -17.79213 -17.57359 -17.12041 -16.63858 -16.57060 -16.32671 -16.08801 -15.75454 -15.31504 -15.04282 -14.74424 -14.69674 -14.36526 -14.01750 -13.97144 -13.57274 -13.21862 -13.10796 -13.01141 -12.78963 -12.68695 -12.59704 -12.55897 -12.31151 -12.25726 -12.14597 -11.74912 -11.54791 -11.49187 -11.36674 -11.14295 -10.71555 -10.41370 -10.29497 -9.85263 -9.69826 -9.34483 -8.03355 -6.18886 0.22376 0.32888 1.41682 1.44390 1.52831 1.82258 2.19717 2.45513 2.63153 3.16540 3.20220 3.41130 3.52318 3.64722 4.05030 4.06368 4.21560 4.27809 4.38506 4.41831 4.51879 4.65754 4.71002 4.72967 4.84388 4.97404 4.98891 5.05203 5.09226 5.10059 5.11368 5.19215 5.21406 5.35863 5.37662 5.44742 5.54894 5.61979 5.66266 5.66531 5.66817 5.89314 6.07730 6.14659 6.21327 6.43188 6.78175 6.85137 7.17067 7.48814 7.65044 8.95658 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.019769 B = 0.002899 C = 0.002666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.026819 B = 9656.703699 C =10498.758876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.054 3.946 3 C -0.118 4.118 4 C -0.531 4.531 5 H 0.042 0.958 6 C 0.030 3.970 7 N -0.898 5.898 8 Si 0.945 3.055 9 H -0.278 1.278 10 H -0.281 1.281 11 H -0.277 1.277 12 C 0.169 3.831 13 N -0.726 5.726 14 C 0.696 3.304 15 O -0.639 6.639 16 N -0.725 5.725 17 C 0.196 3.804 18 H 0.077 0.923 19 C -0.112 4.112 20 C -0.071 4.071 21 C -0.101 4.101 22 C -0.090 4.090 23 C -0.142 4.142 24 C 0.083 3.917 25 O -0.515 6.515 26 C -0.139 4.139 27 C -0.110 4.110 28 H 0.038 0.962 29 H 0.063 0.937 30 H 0.017 0.983 31 H 0.015 0.985 32 H 0.063 0.937 33 H 0.036 0.964 34 H 0.261 0.739 35 H 0.029 0.971 36 H 0.034 0.966 37 H 0.405 0.595 38 H 0.411 0.589 39 H 0.098 0.902 40 H 0.103 0.897 41 H 0.108 0.892 42 H 0.098 0.902 43 H 0.160 0.840 44 H 0.150 0.850 45 H 0.406 0.594 46 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.000 6.634 24.708 25.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.053 3.947 3 C -0.176 4.176 4 C -0.569 4.569 5 H 0.061 0.939 6 C -0.170 4.170 7 N -0.537 5.537 8 Si 0.771 3.229 9 H -0.204 1.204 10 H -0.207 1.207 11 H -0.202 1.202 12 C 0.045 3.955 13 N -0.381 5.381 14 C 0.396 3.604 15 O -0.521 6.521 16 N -0.381 5.381 17 C 0.091 3.909 18 H 0.095 0.905 19 C -0.150 4.150 20 C -0.108 4.108 21 C -0.102 4.102 22 C -0.108 4.108 23 C -0.161 4.161 24 C 0.038 3.962 25 O -0.328 6.328 26 C -0.158 4.158 27 C -0.111 4.111 28 H 0.056 0.944 29 H 0.082 0.918 30 H 0.036 0.964 31 H 0.034 0.966 32 H 0.082 0.918 33 H 0.055 0.945 34 H 0.070 0.930 35 H 0.048 0.952 36 H 0.052 0.948 37 H 0.242 0.758 38 H 0.248 0.752 39 H 0.116 0.884 40 H 0.122 0.878 41 H 0.126 0.874 42 H 0.116 0.884 43 H 0.178 0.822 44 H 0.168 0.832 45 H 0.264 0.736 46 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -0.342 5.298 24.836 25.397 hybrid contribution 0.351 0.324 -2.067 2.121 sum 0.009 5.622 22.769 23.453 Atomic orbital electron populations 1.21653 0.96935 0.98661 1.00415 1.18341 0.93363 0.92959 0.90060 1.21647 0.97727 0.97873 1.00347 1.21280 1.31783 1.12193 0.91684 0.93930 1.25434 0.95124 0.95583 1.00890 1.69905 1.36992 1.23177 1.23627 0.85768 0.78640 0.78545 0.79915 1.20396 1.20670 1.20245 1.21085 0.96370 0.94673 0.83406 1.45192 1.55861 1.33175 1.03877 1.16254 0.80083 0.82708 0.81400 1.90872 1.44732 1.29844 1.86634 1.45041 1.56291 1.33086 1.03650 1.20510 0.90929 0.98310 0.81193 0.90458 1.22637 0.96493 1.03593 0.92294 1.21084 0.88162 1.04189 0.97348 1.20958 0.97670 0.98040 0.93542 1.20844 0.90601 0.98276 1.01079 1.21552 0.99585 1.01586 0.93331 1.18551 0.85049 1.00435 0.92125 1.84776 1.35550 1.43665 1.68766 1.20939 0.93100 1.01886 0.99920 1.20967 0.95012 0.99381 0.95786 0.94353 0.91838 0.96366 0.96619 0.91796 0.94504 0.92977 0.95206 0.94777 0.75824 0.75206 0.88384 0.87811 0.87407 0.88393 0.82194 0.83226 0.73602 0.89345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.30 8.08 71.98 0.58 -4.72 16 2 C 0.05 2.52 0.50 -52.93 -0.03 2.49 16 3 C -0.12 -5.32 8.08 71.98 0.58 -4.74 16 4 C -0.53 -28.66 8.01 25.60 0.21 -28.46 16 5 H 0.04 2.36 7.74 -2.91 -0.02 2.34 16 6 C 0.03 1.57 5.15 84.65 0.44 2.01 16 7 N -0.90 -48.11 9.35 21.45 0.20 -47.91 16 8 Si 0.94 43.16 29.54 68.60 2.03 45.18 16 9 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 10 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 11 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 12 C 0.17 7.52 4.50 86.38 0.39 7.91 16 13 N -0.73 -25.95 4.96 -478.55 -2.37 -28.33 16 14 C 0.70 24.89 8.01 179.06 1.43 26.33 16 15 O -0.64 -28.87 15.48 -3.98 -0.06 -28.93 16 16 N -0.72 -18.19 5.12 -458.18 -2.34 -20.53 16 17 C 0.20 4.46 3.17 44.91 0.14 4.60 16 18 H 0.08 2.17 7.64 -2.39 -0.02 2.15 16 19 C -0.11 -1.33 6.76 31.50 0.21 -1.12 16 20 C -0.07 -0.72 6.77 30.52 0.21 -0.52 16 21 C -0.10 -1.80 6.14 -19.56 -0.12 -1.92 16 22 C -0.09 -1.43 10.03 22.29 0.22 -1.21 16 23 C -0.14 -2.77 9.99 22.34 0.22 -2.54 16 24 C 0.08 2.17 6.70 22.48 0.15 2.32 16 25 O -0.51 -13.18 13.50 -92.38 -1.25 -14.43 16 26 C -0.14 -4.28 9.80 22.40 0.22 -4.06 16 27 C -0.11 -2.75 5.78 -19.60 -0.11 -2.87 16 28 H 0.04 1.42 6.86 -2.39 -0.02 1.40 16 29 H 0.06 3.14 6.07 -2.39 -0.01 3.12 16 30 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.01 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.06 3.18 6.07 -2.38 -0.01 3.16 16 33 H 0.04 1.38 6.86 -2.39 -0.02 1.36 16 34 H 0.26 13.42 8.31 -92.71 -0.77 12.65 16 35 H 0.03 1.43 8.14 -2.39 -0.02 1.42 16 36 H 0.03 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.41 12.35 6.18 -92.70 -0.57 11.77 16 38 H 0.41 7.52 8.41 -92.71 -0.78 6.74 16 39 H 0.10 0.86 7.81 -2.39 -0.02 0.84 16 40 H 0.10 0.93 8.14 -2.38 -0.02 0.91 16 41 H 0.11 0.58 8.14 -2.39 -0.02 0.56 16 42 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 43 H 0.16 1.37 8.06 -2.91 -0.02 1.35 16 44 H 0.15 2.18 8.06 -2.91 -0.02 2.16 16 45 H 0.41 6.52 9.06 -74.06 -0.67 5.85 16 46 H 0.09 3.40 7.07 -2.91 -0.02 3.37 16 Total: -1.00 -72.03 367.94 -0.05 -72.08 By element: Atomic # 1 Polarization: 30.36 SS G_CDS: -1.00 Total: 29.36 kcal Atomic # 6 Polarization: -11.24 SS G_CDS: 4.75 Total: -6.49 kcal Atomic # 7 Polarization: -92.25 SS G_CDS: -4.52 Total: -96.77 kcal Atomic # 8 Polarization: -42.05 SS G_CDS: -1.31 Total: -43.36 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.18 kcal Total: -72.03 -0.05 -72.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596623537.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.144 kcal (2) G-P(sol) polarization free energy of solvation -72.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds