Wall clock time and date at job start Tue Mar 31 2020 12:32:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35907 * 117.00090 * 2 1 4 4 C 1.38690 * 120.00055 * 0.02562 * 3 2 1 5 5 C 1.38127 * 119.89624 * 179.97438 * 4 3 2 6 6 C 1.38216 * 120.02360 * 359.97438 * 5 4 3 7 7 C 1.38338 * 120.26065 * 0.08166 * 6 5 4 8 8 C 1.38159 * 119.94775 * 359.87764 * 7 6 5 9 9 C 1.50770 * 108.90066 * 180.02562 * 8 7 6 10 10 N 1.46634 * 107.69330 * 0.03925 * 9 8 7 11 11 C 1.34785 * 126.56615 * 179.97438 * 10 9 8 12 12 O 1.21582 * 119.99680 * 359.97438 * 11 10 9 13 13 N 1.34770 * 119.99894 * 179.97438 * 11 10 9 14 14 C 1.46503 * 120.00032 * 179.97438 * 13 11 10 15 15 C 1.52998 * 109.47336 * 180.02562 * 14 13 11 16 16 C 1.52996 * 109.47255 * 300.00417 * 15 14 13 17 17 C 1.52999 * 109.47001 * 60.00362 * 15 14 13 18 18 C 1.50699 * 109.46926 * 179.97438 * 15 14 13 19 19 H 1.07999 * 120.00451 * 1.35062 * 18 15 14 20 20 C 1.37882 * 119.99683 * 181.34803 * 18 15 14 21 21 N 1.31521 * 119.99514 * 193.97908 * 20 18 15 22 22 Si 1.86795 * 119.99964 * 13.97739 * 20 18 15 23 23 H 1.48503 * 109.47072 * 84.55183 * 22 20 18 24 24 H 1.48502 * 109.46945 * 204.54714 * 22 20 18 25 25 H 1.48493 * 109.47449 * 324.54867 * 22 20 18 26 26 C 1.46627 * 106.86953 * 359.97438 * 10 9 8 27 27 H 1.08998 * 109.46408 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46704 * 299.99620 * 1 2 3 29 29 H 1.09000 * 109.47092 * 59.99870 * 1 2 3 30 30 H 1.07999 * 120.05334 * 359.94817 * 4 3 2 31 31 H 1.07995 * 119.98514 * 179.97438 * 5 4 3 32 32 H 1.07998 * 119.88913 * 180.02562 * 6 5 4 33 33 H 1.08996 * 109.81013 * 240.49046 * 9 8 7 34 34 H 1.09003 * 109.87074 * 119.61543 * 9 8 7 35 35 H 0.97001 * 120.00395 * 0.02562 * 13 11 10 36 36 H 1.09003 * 109.47094 * 300.00905 * 14 13 11 37 37 H 1.09007 * 109.46699 * 60.00005 * 14 13 11 38 38 H 1.08995 * 109.47397 * 69.36641 * 16 15 14 39 39 H 1.09001 * 109.47008 * 189.37030 * 16 15 14 40 40 H 1.09008 * 109.47077 * 309.36579 * 16 15 14 41 41 H 1.09003 * 109.46841 * 59.99563 * 17 15 14 42 42 H 1.08996 * 109.46875 * 179.97438 * 17 15 14 43 43 H 1.09007 * 109.47014 * 300.00271 * 17 15 14 44 44 H 0.97003 * 119.99039 * 179.97438 * 21 20 18 45 45 H 1.09002 * 109.81759 * 119.54792 * 26 10 9 46 46 H 1.09002 * 109.81282 * 240.38653 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2907 2.3741 0.0005 5 6 1.9200 3.6037 0.0011 6 6 3.3004 3.6740 0.0016 7 6 4.0575 2.5162 -0.0001 8 6 3.4330 1.2838 0.0002 9 6 4.4846 0.2034 -0.0012 10 7 5.7965 0.8584 -0.0015 11 6 6.9985 0.2486 -0.0022 12 8 7.0641 -0.9654 -0.0022 13 7 8.1275 0.9846 -0.0029 14 6 9.4340 0.3218 -0.0031 15 6 10.5414 1.3774 -0.0033 16 6 10.4128 2.2514 -1.2524 17 6 10.4132 2.2513 1.2460 18 6 11.8853 0.6955 -0.0028 19 1 11.9439 -0.3827 -0.0245 20 6 13.0402 1.4482 0.0252 21 7 14.1976 0.8870 -0.2491 22 14 12.9610 3.2648 0.4527 23 1 12.9774 3.4271 1.9287 24 1 14.1323 3.9632 -0.1351 25 1 11.7104 3.8483 -0.0956 26 6 5.5503 2.3039 -0.0009 27 1 -0.3632 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 0.2121 2.3186 0.0001 31 1 1.3333 4.5103 0.0011 32 1 3.7902 4.6366 0.0024 33 1 4.3793 -0.4133 -0.8937 34 1 4.3809 -0.4157 0.8899 35 1 8.0751 1.9532 -0.0025 36 1 9.5258 -0.3006 0.8870 37 1 9.5251 -0.3012 -0.8930 38 1 9.5189 2.8699 -1.1726 39 1 11.2908 2.8913 -1.3401 40 1 10.3370 1.6155 -2.1346 41 1 10.5048 1.6285 2.1360 42 1 11.2024 3.0030 1.2461 43 1 9.4411 2.7444 1.2462 44 1 15.0101 1.4166 -0.2298 45 1 5.9872 2.7528 0.8912 46 1 5.9875 2.7535 -0.8924 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599073576.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:44 Heat of formation + Delta-G solvation = -8.466482 kcal Electronic energy + Delta-G solvation = -26660.543205 eV Core-core repulsion = 22937.830439 eV Total energy + Delta-G solvation = -3722.712765 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.14043 -39.73627 -38.36304 -36.84413 -35.81758 -33.34011 -31.73659 -31.12360 -30.95094 -27.96641 -27.74938 -26.40523 -26.15941 -25.13502 -24.23851 -21.88078 -21.60030 -20.00627 -19.21366 -18.10897 -17.83990 -16.46125 -16.31708 -16.26562 -16.04755 -15.89392 -15.48946 -15.16961 -14.42743 -14.35815 -14.17707 -13.65439 -13.23446 -13.20475 -13.10144 -12.91601 -12.88793 -12.59644 -12.52476 -12.24426 -12.19317 -12.03539 -11.71729 -11.43120 -11.29759 -11.28134 -10.41626 -10.30299 -10.16116 -10.05457 -9.91654 -9.39492 -9.12437 -8.67816 -8.66384 -8.52774 -8.45449 -8.20813 -6.13382 -4.10462 0.86079 1.04619 2.65527 2.92026 3.24763 3.30199 3.31661 3.39340 3.47652 3.89880 4.21980 4.33258 4.36572 4.51958 4.69557 4.75328 4.85162 5.00884 5.06764 5.11291 5.17275 5.23487 5.24622 5.42810 5.55643 5.71064 5.76690 5.84357 6.00326 6.03604 6.05875 6.09277 6.21290 6.34412 6.37251 6.48890 6.54869 6.63850 6.72004 6.82567 6.98618 6.99633 7.21115 7.25928 7.44742 7.73882 8.22859 8.47444 8.87065 8.92977 9.50417 10.99700 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.027636 B = 0.002713 C = 0.002520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.931036 B =10319.769105 C =11108.607257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.313 6.313 3 C 0.151 3.849 4 C -0.206 4.206 5 C -0.076 4.076 6 C -0.132 4.132 7 C -0.062 4.062 8 C -0.134 4.134 9 C 0.183 3.817 10 N -0.639 5.639 11 C 0.727 3.273 12 O -0.585 6.585 13 N -0.734 5.734 14 C 0.159 3.841 15 C 0.029 3.971 16 C -0.141 4.141 17 C -0.147 4.147 18 C -0.512 4.512 19 H 0.077 0.923 20 C 0.075 3.925 21 N -0.891 5.891 22 Si 0.886 3.114 23 H -0.286 1.286 24 H -0.306 1.306 25 H -0.249 1.249 26 C 0.143 3.857 27 H 0.101 0.899 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.133 0.867 31 H 0.131 0.869 32 H 0.129 0.871 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.392 0.608 36 H 0.061 0.939 37 H 0.063 0.937 38 H 0.020 0.980 39 H 0.056 0.944 40 H 0.047 0.953 41 H 0.054 0.946 42 H 0.041 0.959 43 H 0.028 0.972 44 H 0.264 0.736 45 H 0.083 0.917 46 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.642 7.497 0.498 29.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.226 6.226 3 C 0.105 3.895 4 C -0.224 4.224 5 C -0.094 4.094 6 C -0.151 4.151 7 C -0.063 4.063 8 C -0.136 4.136 9 C 0.059 3.941 10 N -0.379 5.379 11 C 0.429 3.571 12 O -0.462 6.462 13 N -0.388 5.388 14 C 0.037 3.963 15 C 0.027 3.973 16 C -0.199 4.199 17 C -0.204 4.204 18 C -0.550 4.550 19 H 0.095 0.905 20 C -0.128 4.128 21 N -0.528 5.528 22 Si 0.719 3.281 23 H -0.214 1.214 24 H -0.234 1.234 25 H -0.175 1.175 26 C 0.020 3.980 27 H 0.119 0.881 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.151 0.849 31 H 0.149 0.851 32 H 0.147 0.853 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.227 0.773 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.039 0.961 39 H 0.075 0.925 40 H 0.067 0.933 41 H 0.073 0.927 42 H 0.059 0.941 43 H 0.047 0.953 44 H 0.074 0.926 45 H 0.101 0.899 46 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -28.140 6.313 0.472 28.844 hybrid contribution -0.264 1.739 0.321 1.788 sum -28.405 8.052 0.792 29.534 Atomic orbital electron populations 1.23086 0.78250 1.04189 1.01304 1.86135 1.21456 1.26637 1.88418 1.18344 0.89926 0.84672 0.96514 1.21146 1.00029 0.92000 1.09267 1.20842 0.94039 0.97160 0.97392 1.20376 0.93344 0.97260 1.04105 1.20133 0.94790 0.93006 0.98330 1.19598 0.90957 0.96178 1.06842 1.19739 0.78661 0.92679 1.02975 1.46983 1.04750 1.06027 1.80179 1.15275 0.78697 0.84989 0.78170 1.90928 1.85339 1.11534 1.58396 1.45496 1.05278 1.09560 1.78471 1.21435 0.78017 0.95268 1.01600 1.18732 0.94768 0.92302 0.91465 1.22290 0.99111 0.99115 0.99358 1.22355 0.98115 0.99514 1.00390 1.20710 0.87262 0.95002 1.51993 0.90454 1.24976 0.95307 0.98240 0.94251 1.69959 0.98644 1.37059 1.47096 0.87289 0.76265 0.86345 0.78242 1.21378 1.23447 1.17532 1.20269 0.91783 0.83277 1.02707 0.88061 0.92579 0.92583 0.84946 0.85146 0.85337 0.90289 0.90285 0.77309 0.92015 0.91900 0.96067 0.92529 0.93339 0.92729 0.94063 0.95299 0.92576 0.89911 0.89866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 9.81 101.05 0.99 1.14 16 2 O -0.31 -3.09 10.47 -19.45 -0.20 -3.29 16 3 C 0.15 1.55 6.69 -39.17 -0.26 1.29 16 4 C -0.21 -1.62 9.03 -39.45 -0.36 -1.98 16 5 C -0.08 -0.56 10.04 -39.63 -0.40 -0.95 16 6 C -0.13 -1.09 10.03 -39.55 -0.40 -1.49 16 7 C -0.06 -0.64 6.22 -104.57 -0.65 -1.30 16 8 C -0.13 -1.56 6.18 -104.38 -0.65 -2.21 16 9 C 0.18 2.47 6.87 -5.09 -0.03 2.43 16 10 N -0.64 -9.30 3.34 -181.88 -0.61 -9.90 16 11 C 0.73 13.17 8.51 -86.92 -0.74 12.43 16 12 O -0.58 -12.88 16.72 5.29 0.09 -12.79 16 13 N -0.73 -12.72 4.97 -65.22 -0.32 -13.04 16 14 C 0.16 3.28 4.49 -4.04 -0.02 3.26 16 15 C 0.03 0.63 0.50 -155.66 -0.08 0.55 16 16 C -0.14 -2.88 7.53 37.16 0.28 -2.60 16 17 C -0.15 -2.98 7.52 37.16 0.28 -2.70 16 18 C -0.51 -13.78 8.62 -34.44 -0.30 -14.08 16 19 H 0.08 2.29 7.99 -52.49 -0.42 1.87 16 20 C 0.07 2.08 5.32 -17.82 -0.09 1.99 16 21 N -0.89 -26.68 13.96 55.43 0.77 -25.91 16 22 Si 0.89 21.06 22.79 -169.99 -3.87 17.19 16 23 H -0.29 -6.78 7.10 56.52 0.40 -6.38 16 24 H -0.31 -7.45 7.11 56.52 0.40 -7.05 16 25 H -0.25 -5.36 4.65 56.52 0.26 -5.10 16 26 C 0.14 1.58 6.21 -5.08 -0.03 1.55 16 27 H 0.10 0.39 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 0.24 7.66 -51.93 -0.40 -0.16 16 29 H 0.06 0.24 7.66 -51.93 -0.40 -0.16 16 30 H 0.13 0.71 6.30 -52.49 -0.33 0.38 16 31 H 0.13 0.60 8.06 -52.49 -0.42 0.18 16 32 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 33 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.39 5.90 5.31 -40.82 -0.22 5.68 16 36 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 37 H 0.06 1.38 8.14 -51.92 -0.42 0.95 16 38 H 0.02 0.36 7.13 -51.93 -0.37 -0.02 16 39 H 0.06 1.22 4.30 -51.93 -0.22 1.00 16 40 H 0.05 0.98 8.12 -51.92 -0.42 0.56 16 41 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 42 H 0.04 0.88 2.25 -51.93 -0.12 0.77 16 43 H 0.03 0.48 6.86 -51.93 -0.36 0.13 16 44 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 45 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 46 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 357.82 15.07 5.39 5.39 Total: -1.00 -33.21 357.82 -7.96 -41.16 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: -6.75 Total: 3.87 kcal Atomic # 6 Polarization: -0.23 SS G_CDS: -2.45 Total: -2.68 kcal Atomic # 7 Polarization: -48.69 SS G_CDS: -0.16 Total: -48.85 kcal Atomic # 8 Polarization: -15.97 SS G_CDS: -0.12 Total: -16.08 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -3.87 Total: 17.19 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -33.21 -7.96 -41.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599073576.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.698 kcal (2) G-P(sol) polarization free energy of solvation -33.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds