Wall clock time and date at job start Tue Mar 31 2020 12:32:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35907 * 117.00090 * 2 1 4 4 C 1.38690 * 120.00055 * 0.02562 * 3 2 1 5 5 C 1.38127 * 119.89624 * 179.97438 * 4 3 2 6 6 C 1.38216 * 120.02360 * 359.97438 * 5 4 3 7 7 C 1.38338 * 120.26065 * 0.08166 * 6 5 4 8 8 C 1.38159 * 119.94775 * 359.87764 * 7 6 5 9 9 C 1.50770 * 108.90066 * 180.02562 * 8 7 6 10 10 N 1.46634 * 107.69330 * 0.03925 * 9 8 7 11 11 C 1.34785 * 126.56615 * 179.97438 * 10 9 8 12 12 O 1.21582 * 119.99680 * 359.97438 * 11 10 9 13 13 N 1.34770 * 119.99894 * 179.97438 * 11 10 9 14 14 C 1.46503 * 120.00032 * 179.97438 * 13 11 10 15 15 C 1.52998 * 109.47336 * 180.02562 * 14 13 11 16 16 C 1.52996 * 109.47255 * 300.00417 * 15 14 13 17 17 C 1.52999 * 109.47001 * 60.00362 * 15 14 13 18 18 C 1.50699 * 109.46926 * 179.97438 * 15 14 13 19 19 H 1.07999 * 120.00451 * 1.35062 * 18 15 14 20 20 C 1.37882 * 119.99683 * 181.34803 * 18 15 14 21 21 N 1.31521 * 119.99514 * 193.97908 * 20 18 15 22 22 Si 1.86795 * 119.99964 * 13.97739 * 20 18 15 23 23 H 1.48503 * 109.47072 * 84.55183 * 22 20 18 24 24 H 1.48502 * 109.46945 * 204.54714 * 22 20 18 25 25 H 1.48493 * 109.47449 * 324.54867 * 22 20 18 26 26 C 1.46627 * 106.86953 * 359.97438 * 10 9 8 27 27 H 1.08998 * 109.46408 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46704 * 299.99620 * 1 2 3 29 29 H 1.09000 * 109.47092 * 59.99870 * 1 2 3 30 30 H 1.07999 * 120.05334 * 359.94817 * 4 3 2 31 31 H 1.07995 * 119.98514 * 179.97438 * 5 4 3 32 32 H 1.07998 * 119.88913 * 180.02562 * 6 5 4 33 33 H 1.08996 * 109.81013 * 240.49046 * 9 8 7 34 34 H 1.09003 * 109.87074 * 119.61543 * 9 8 7 35 35 H 0.97001 * 120.00395 * 0.02562 * 13 11 10 36 36 H 1.09003 * 109.47094 * 300.00905 * 14 13 11 37 37 H 1.09007 * 109.46699 * 60.00005 * 14 13 11 38 38 H 1.08995 * 109.47397 * 69.36641 * 16 15 14 39 39 H 1.09001 * 109.47008 * 189.37030 * 16 15 14 40 40 H 1.09008 * 109.47077 * 309.36579 * 16 15 14 41 41 H 1.09003 * 109.46841 * 59.99563 * 17 15 14 42 42 H 1.08996 * 109.46875 * 179.97438 * 17 15 14 43 43 H 1.09007 * 109.47014 * 300.00271 * 17 15 14 44 44 H 0.97003 * 119.99039 * 179.97438 * 21 20 18 45 45 H 1.09002 * 109.81759 * 119.54792 * 26 10 9 46 46 H 1.09002 * 109.81282 * 240.38653 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2907 2.3741 0.0005 5 6 1.9200 3.6037 0.0011 6 6 3.3004 3.6740 0.0016 7 6 4.0575 2.5162 -0.0001 8 6 3.4330 1.2838 0.0002 9 6 4.4846 0.2034 -0.0012 10 7 5.7965 0.8584 -0.0015 11 6 6.9985 0.2486 -0.0022 12 8 7.0641 -0.9654 -0.0022 13 7 8.1275 0.9846 -0.0029 14 6 9.4340 0.3218 -0.0031 15 6 10.5414 1.3774 -0.0033 16 6 10.4128 2.2514 -1.2524 17 6 10.4132 2.2513 1.2460 18 6 11.8853 0.6955 -0.0028 19 1 11.9439 -0.3827 -0.0245 20 6 13.0402 1.4482 0.0252 21 7 14.1976 0.8870 -0.2491 22 14 12.9610 3.2648 0.4527 23 1 12.9774 3.4271 1.9287 24 1 14.1323 3.9632 -0.1351 25 1 11.7104 3.8483 -0.0956 26 6 5.5503 2.3039 -0.0009 27 1 -0.3632 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 0.2121 2.3186 0.0001 31 1 1.3333 4.5103 0.0011 32 1 3.7902 4.6366 0.0024 33 1 4.3793 -0.4133 -0.8937 34 1 4.3809 -0.4157 0.8899 35 1 8.0751 1.9532 -0.0025 36 1 9.5258 -0.3006 0.8870 37 1 9.5251 -0.3012 -0.8930 38 1 9.5189 2.8699 -1.1726 39 1 11.2908 2.8913 -1.3401 40 1 10.3370 1.6155 -2.1346 41 1 10.5048 1.6285 2.1360 42 1 11.2024 3.0030 1.2461 43 1 9.4411 2.7444 1.2462 44 1 15.0101 1.4166 -0.2298 45 1 5.9872 2.7528 0.8912 46 1 5.9875 2.7535 -0.8924 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599073576.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:43 Heat of formation + Delta-G solvation = -31.579585 kcal Electronic energy + Delta-G solvation = -26661.545464 eV Core-core repulsion = 22937.830439 eV Total energy + Delta-G solvation = -3723.715025 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.01499 -40.87018 -39.30477 -38.39627 -36.82167 -35.04955 -33.52605 -32.10353 -31.77886 -28.79724 -28.36266 -28.01187 -27.52546 -26.96839 -25.55176 -22.64029 -22.28654 -21.37947 -20.95186 -19.32080 -18.59564 -18.04411 -17.47638 -17.34214 -17.15899 -16.85758 -16.62737 -16.33173 -15.72822 -15.48212 -15.35727 -14.88467 -14.60736 -14.57219 -14.36640 -14.03000 -14.01163 -13.90664 -13.73834 -13.67523 -13.30432 -12.92998 -12.86712 -12.38190 -12.32737 -12.14437 -11.95703 -11.93882 -11.91416 -11.75751 -11.50690 -11.04901 -10.60479 -10.41991 -10.37932 -9.96928 -9.33948 -9.15003 -8.28285 -6.30238 0.20121 0.40951 1.38449 1.39610 1.40523 1.53235 2.03515 2.36269 2.36850 2.66654 2.93475 3.07745 3.27349 3.42112 4.02456 4.05912 4.14546 4.25016 4.33431 4.38629 4.41543 4.42513 4.43428 4.44190 4.49987 4.51302 4.71472 4.73968 4.75698 4.83094 4.86526 4.89500 4.93705 5.02348 5.07075 5.17867 5.28488 5.41186 5.43858 5.50313 5.53619 5.73325 5.75763 5.80862 5.96686 6.32442 6.40737 6.73600 6.91242 7.34223 7.46505 8.88944 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.027636 B = 0.002713 C = 0.002520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.931036 B =10319.769105 C =11108.607257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.341 6.341 3 C 0.138 3.862 4 C -0.204 4.204 5 C -0.069 4.069 6 C -0.131 4.131 7 C -0.069 4.069 8 C -0.164 4.164 9 C 0.184 3.816 10 N -0.635 5.635 11 C 0.725 3.275 12 O -0.633 6.633 13 N -0.718 5.718 14 C 0.176 3.824 15 C 0.029 3.971 16 C -0.140 4.140 17 C -0.146 4.146 18 C -0.518 4.518 19 H 0.027 0.973 20 C 0.015 3.985 21 N -0.947 5.947 22 Si 0.946 3.054 23 H -0.281 1.281 24 H -0.316 1.316 25 H -0.201 1.201 26 C 0.137 3.863 27 H 0.112 0.888 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.159 0.841 31 H 0.165 0.835 32 H 0.155 0.845 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.409 0.591 36 H 0.041 0.959 37 H 0.039 0.961 38 H 0.066 0.934 39 H 0.047 0.953 40 H 0.040 0.960 41 H 0.046 0.954 42 H 0.037 0.963 43 H 0.073 0.927 44 H 0.264 0.736 45 H 0.101 0.899 46 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.232 12.076 0.786 34.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.255 6.255 3 C 0.092 3.908 4 C -0.222 4.222 5 C -0.086 4.086 6 C -0.150 4.150 7 C -0.069 4.069 8 C -0.166 4.166 9 C 0.061 3.939 10 N -0.373 5.373 11 C 0.427 3.573 12 O -0.515 6.515 13 N -0.374 5.374 14 C 0.051 3.949 15 C 0.028 3.972 16 C -0.198 4.198 17 C -0.203 4.203 18 C -0.556 4.556 19 H 0.045 0.955 20 C -0.182 4.182 21 N -0.586 5.586 22 Si 0.775 3.225 23 H -0.209 1.209 24 H -0.245 1.245 25 H -0.125 1.125 26 C 0.015 3.985 27 H 0.130 0.870 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.176 0.824 31 H 0.183 0.817 32 H 0.173 0.827 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.246 0.754 36 H 0.060 0.940 37 H 0.058 0.942 38 H 0.085 0.915 39 H 0.066 0.934 40 H 0.059 0.941 41 H 0.065 0.935 42 H 0.055 0.945 43 H 0.092 0.908 44 H 0.073 0.927 45 H 0.119 0.881 46 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -31.812 10.943 0.760 33.650 hybrid contribution 0.713 0.174 0.212 0.764 sum -31.099 11.118 0.971 33.040 Atomic orbital electron populations 1.23365 0.76143 1.05500 1.02598 1.86101 1.23782 1.27132 1.88501 1.18579 0.89699 0.85651 0.96836 1.21501 1.01307 0.91375 1.08029 1.21314 0.94003 0.98109 0.95206 1.20720 0.93806 0.97425 1.03017 1.20192 0.94235 0.93336 0.99184 1.19518 0.91377 0.95811 1.09870 1.19666 0.79202 0.93571 1.01505 1.46864 1.03777 1.08144 1.78562 1.15335 0.79645 0.84406 0.77933 1.90894 1.86269 1.13892 1.60404 1.45065 1.03820 1.10065 1.78460 1.20971 0.79496 0.94759 0.99643 1.18653 0.91985 0.92842 0.93738 1.22216 1.00763 0.99014 0.97771 1.22290 1.00428 0.98994 0.98596 1.21005 0.90358 0.93153 1.51084 0.95475 1.25893 0.94564 1.03751 0.94016 1.70125 0.99686 1.39361 1.49421 0.86310 0.77875 0.80109 0.78179 1.20869 1.24519 1.12468 1.20545 0.92960 0.80626 1.04359 0.86972 0.91194 0.91206 0.82372 0.81730 0.82703 0.91963 0.91921 0.75386 0.94016 0.94212 0.91537 0.93396 0.94130 0.93501 0.94482 0.90811 0.92678 0.88092 0.88127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.81 113.37 1.11 1.27 16 2 O -0.34 -6.55 10.47 -92.50 -0.97 -7.52 16 3 C 0.14 2.63 6.69 22.53 0.15 2.78 16 4 C -0.20 -2.52 9.03 22.35 0.20 -2.31 16 5 C -0.07 -0.68 10.04 22.24 0.22 -0.46 16 6 C -0.13 -1.60 10.03 22.29 0.22 -1.38 16 7 C -0.07 -1.25 6.22 -19.83 -0.12 -1.37 16 8 C -0.16 -3.68 6.18 -19.71 -0.12 -3.80 16 9 C 0.18 5.13 6.87 85.63 0.59 5.72 16 10 N -0.64 -18.05 3.34 -847.59 -2.83 -20.88 16 11 C 0.72 26.25 8.51 179.05 1.52 27.77 16 12 O -0.63 -29.07 16.72 -3.97 -0.07 -29.14 16 13 N -0.72 -23.82 4.97 -478.53 -2.38 -26.20 16 14 C 0.18 7.30 4.49 86.38 0.39 7.69 16 15 C 0.03 1.24 0.50 -52.93 -0.03 1.22 16 16 C -0.14 -5.30 7.53 71.98 0.54 -4.76 16 17 C -0.15 -5.45 7.52 71.98 0.54 -4.91 16 18 C -0.52 -28.82 8.62 25.60 0.22 -28.60 16 19 H 0.03 1.72 7.99 -2.91 -0.02 1.70 16 20 C 0.02 0.86 5.32 84.65 0.45 1.31 16 21 N -0.95 -59.06 13.96 21.45 0.30 -58.76 16 22 Si 0.95 42.45 22.79 68.60 1.56 44.01 16 23 H -0.28 -12.37 7.10 99.48 0.71 -11.66 16 24 H -0.32 -14.63 7.11 99.48 0.71 -13.92 16 25 H -0.20 -7.49 4.65 99.48 0.46 -7.03 16 26 C 0.14 2.62 6.21 85.64 0.53 3.15 16 27 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.07 0.42 7.66 -2.39 -0.02 0.40 16 29 H 0.07 0.42 7.66 -2.39 -0.02 0.40 16 30 H 0.16 1.04 6.30 -2.91 -0.02 1.02 16 31 H 0.17 0.51 8.06 -2.91 -0.02 0.49 16 32 H 0.16 1.04 8.06 -2.91 -0.02 1.02 16 33 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 34 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 35 H 0.41 10.67 5.31 -92.71 -0.49 10.18 16 36 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 37 H 0.04 1.82 8.14 -2.38 -0.02 1.80 16 38 H 0.07 1.91 7.13 -2.39 -0.02 1.89 16 39 H 0.05 1.90 4.30 -2.39 -0.01 1.89 16 40 H 0.04 1.58 8.12 -2.38 -0.02 1.56 16 41 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 42 H 0.04 1.42 2.25 -2.39 -0.01 1.42 16 43 H 0.07 2.08 6.86 -2.38 -0.02 2.07 16 44 H 0.26 15.51 8.31 -92.71 -0.77 14.74 16 45 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 46 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 Total: -1.00 -78.32 357.82 2.31 -76.01 By element: Atomic # 1 Polarization: 18.89 SS G_CDS: 0.26 Total: 19.15 kcal Atomic # 6 Polarization: -3.10 SS G_CDS: 6.43 Total: 3.33 kcal Atomic # 7 Polarization: -100.94 SS G_CDS: -4.91 Total: -105.84 kcal Atomic # 8 Polarization: -35.62 SS G_CDS: -1.03 Total: -36.65 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 1.56 Total: 44.01 kcal Total: -78.32 2.31 -76.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599073576.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.426 kcal (2) G-P(sol) polarization free energy of solvation -78.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds