Wall clock time and date at job start Tue Mar 31 2020 12:32:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52994 * 109.47368 * 2 1 4 4 C 1.50697 * 109.47391 * 239.99331 * 2 1 3 5 5 H 1.07998 * 120.00301 * 240.00250 * 4 2 1 6 6 C 1.37885 * 119.99738 * 60.00370 * 4 2 1 7 7 N 1.31516 * 119.99905 * 0.02562 * 6 4 2 8 8 Si 1.86795 * 119.99985 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47514 * 89.99845 * 8 6 4 10 10 H 1.48498 * 109.46985 * 210.00221 * 8 6 4 11 11 H 1.48503 * 109.47097 * 329.99469 * 8 6 4 12 12 C 1.53004 * 109.46626 * 119.99718 * 2 1 3 13 13 N 1.46501 * 109.47366 * 299.99535 * 12 2 1 14 14 C 1.34770 * 120.00052 * 180.02562 * 13 12 2 15 15 O 1.21585 * 120.00527 * 4.97269 * 14 13 12 16 16 N 1.34777 * 119.99804 * 184.97513 * 14 13 12 17 17 C 1.47139 * 121.35435 * 174.81119 * 16 14 13 18 18 C 1.52788 * 107.95069 * 115.75968 * 17 16 14 19 19 C 1.50598 * 110.82015 * 47.47708 * 18 17 16 20 20 C 1.39464 * 117.63077 * 159.97692 * 19 18 17 21 21 O 1.35905 * 119.76575 * 359.53346 * 20 19 18 22 22 C 1.38407 * 120.46607 * 179.56435 * 20 19 18 23 23 C 1.38176 * 119.76392 * 359.90038 * 22 20 19 24 24 C 1.37979 * 119.77628 * 0.22884 * 23 22 20 25 25 C 1.37581 * 122.88667 * 339.87218 * 19 18 17 26 26 C 1.46676 * 121.33898 * 354.78721 * 16 14 13 27 27 H 1.08997 * 109.47435 * 300.00638 * 1 2 3 28 28 H 1.09007 * 109.46848 * 59.99898 * 1 2 3 29 29 H 1.08997 * 109.47823 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47062 * 179.97438 * 3 2 1 31 31 H 1.09005 * 109.46741 * 299.99675 * 3 2 1 32 32 H 1.08997 * 109.47363 * 59.99318 * 3 2 1 33 33 H 0.96991 * 119.99949 * 180.02562 * 7 6 4 34 34 H 1.08998 * 109.46803 * 179.97438 * 12 2 1 35 35 H 1.09003 * 109.46977 * 60.00261 * 12 2 1 36 36 H 0.96999 * 119.99675 * 0.02562 * 13 12 2 37 37 H 1.09000 * 109.71743 * 356.16040 * 17 16 14 38 38 H 1.08999 * 109.77291 * 235.39308 * 17 16 14 39 39 H 1.08994 * 109.20008 * 287.14625 * 18 17 16 40 40 H 1.09001 * 109.19614 * 167.80643 * 18 17 16 41 41 H 0.96704 * 113.99671 * 90.01078 * 21 20 19 42 42 H 1.08004 * 120.11905 * 179.97438 * 22 20 19 43 43 H 1.07997 * 120.10907 * 180.24938 * 23 22 20 44 44 H 1.07999 * 119.68567 * 180.02562 * 24 23 22 45 45 H 1.08999 * 109.43376 * 104.33201 * 26 16 14 46 46 H 1.08997 * 109.43199 * 344.46725 * 26 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7105 -1.2303 5 1 2.6532 -1.5886 -1.1312 6 6 1.6993 -0.2395 -2.4827 7 7 0.9437 0.8301 -2.6035 8 14 2.3214 -1.1206 -4.0078 9 1 1.3429 -2.1620 -4.4118 10 1 2.4868 -0.1417 -5.1121 11 1 3.6294 -1.7585 -3.7120 12 6 2.0399 -0.7212 1.2493 13 7 1.5516 -0.0305 2.4455 14 6 1.8775 -0.4906 3.6696 15 8 2.6492 -1.4233 3.7829 16 7 1.3480 0.0831 4.7681 17 6 1.5932 -0.4645 6.1116 18 6 2.3778 0.5766 6.9085 19 6 1.7540 1.9401 6.7675 20 6 2.0642 2.8963 7.7342 21 8 2.8955 2.5738 8.7599 22 6 1.5308 4.1711 7.6568 23 6 0.6867 4.4993 6.6132 24 6 0.3777 3.5526 5.6582 25 6 0.9058 2.2705 5.7359 26 6 0.5042 1.2791 4.6727 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 3.1300 1.4424 0.0005 31 1 1.6767 1.9562 -0.8901 32 1 1.6766 1.9563 0.8899 33 1 0.7091 1.1612 -3.4844 34 1 3.1298 -0.7216 1.2491 35 1 1.6765 -1.7489 1.2493 36 1 0.9937 0.7580 2.3564 37 1 2.1738 -1.3837 6.0337 38 1 0.6433 -0.6682 6.6058 39 1 3.4031 0.6117 6.5404 40 1 2.3841 0.2924 7.9608 41 1 3.8300 2.7414 8.5762 42 1 1.7744 4.9071 8.4087 43 1 0.2706 5.4935 6.5451 44 1 -0.2819 3.8108 4.8429 45 1 -0.5396 0.9988 4.8140 46 1 0.6274 1.7323 3.6891 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599074944.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:56 Heat of formation + Delta-G solvation = -45.733748 kcal Electronic energy + Delta-G solvation = -27119.632172 eV Core-core repulsion = 23395.303377 eV Total energy + Delta-G solvation = -3724.328795 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.79195 -39.50565 -37.35916 -36.56594 -35.67077 -33.54773 -32.35700 -31.32973 -30.69708 -28.90599 -26.16452 -25.72983 -25.49948 -24.79548 -23.60773 -22.33288 -21.19960 -19.30082 -18.87475 -18.31018 -17.87091 -16.52448 -16.09188 -15.87565 -15.78802 -15.39731 -15.05212 -14.72028 -14.32223 -14.02009 -13.91218 -13.72731 -13.36078 -12.98334 -12.90612 -12.63331 -12.46472 -12.34483 -12.15470 -11.88931 -11.57015 -11.39938 -11.30948 -11.19131 -10.86779 -10.68841 -10.57483 -10.38592 -10.20506 -9.78999 -9.63385 -9.31001 -8.93196 -8.80159 -8.79310 -8.65272 -8.40521 -8.16340 -6.02200 -4.11952 0.97518 1.06236 2.86864 3.28575 3.31384 3.35552 3.39955 3.55134 3.95362 4.28276 4.42437 4.44071 4.50894 4.76255 4.81376 5.05837 5.11122 5.18663 5.24692 5.24985 5.39876 5.50800 5.56342 5.69869 5.75455 5.94965 6.12261 6.17625 6.19890 6.30672 6.36615 6.49097 6.52689 6.54472 6.79604 6.81477 6.91434 7.02999 7.08391 7.25104 7.38172 7.38560 7.55615 7.69838 8.00868 8.12011 8.35695 8.41185 8.87663 8.99398 9.53785 10.99313 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.022791 B = 0.002945 C = 0.002743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.279333 B = 9506.354775 C =10206.492545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.056 3.944 3 C -0.129 4.129 4 C -0.505 4.505 5 H 0.058 0.942 6 C 0.066 3.934 7 N -0.886 5.886 8 Si 0.893 3.107 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.274 1.274 12 C 0.149 3.851 13 N -0.732 5.732 14 C 0.706 3.294 15 O -0.594 6.594 16 N -0.636 5.636 17 C 0.132 3.868 18 C -0.094 4.094 19 C -0.088 4.088 20 C 0.101 3.899 21 O -0.498 6.498 22 C -0.146 4.146 23 C -0.106 4.106 24 C -0.120 4.120 25 C -0.078 4.078 26 C 0.153 3.847 27 H 0.004 0.996 28 H 0.085 0.915 29 H 0.027 0.973 30 H 0.026 0.974 31 H 0.085 0.915 32 H 0.004 0.996 33 H 0.260 0.740 34 H 0.053 0.947 35 H 0.052 0.948 36 H 0.393 0.607 37 H 0.100 0.900 38 H 0.068 0.932 39 H 0.079 0.921 40 H 0.090 0.910 41 H 0.389 0.611 42 H 0.127 0.873 43 H 0.128 0.872 44 H 0.129 0.871 45 H 0.082 0.918 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.637 7.553 19.443 20.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.055 3.945 3 C -0.187 4.187 4 C -0.544 4.544 5 H 0.076 0.924 6 C -0.135 4.135 7 N -0.525 5.525 8 Si 0.721 3.279 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.199 1.199 12 C 0.026 3.974 13 N -0.388 5.388 14 C 0.408 3.592 15 O -0.473 6.473 16 N -0.375 5.375 17 C 0.009 3.991 18 C -0.132 4.132 19 C -0.089 4.089 20 C 0.056 3.944 21 O -0.308 6.308 22 C -0.164 4.164 23 C -0.124 4.124 24 C -0.139 4.139 25 C -0.079 4.079 26 C 0.029 3.971 27 H 0.023 0.977 28 H 0.104 0.896 29 H 0.046 0.954 30 H 0.046 0.954 31 H 0.104 0.896 32 H 0.022 0.978 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.229 0.771 37 H 0.118 0.882 38 H 0.087 0.913 39 H 0.098 0.902 40 H 0.108 0.892 41 H 0.245 0.755 42 H 0.145 0.855 43 H 0.146 0.854 44 H 0.147 0.853 45 H 0.100 0.900 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -1.656 6.764 19.588 20.789 hybrid contribution 0.461 0.317 -1.037 1.179 sum -1.195 7.082 18.551 19.893 Atomic orbital electron populations 1.21819 0.97781 0.99179 0.99928 1.18360 0.92780 0.92764 0.90553 1.21813 0.98610 0.98354 0.99887 1.20989 1.31444 1.12088 0.89848 0.92384 1.24877 0.94880 0.94909 0.98837 1.69800 1.36770 1.22736 1.23202 0.86568 0.79344 0.79378 0.82565 1.20721 1.21294 1.19888 1.21609 0.98037 0.95353 0.82392 1.45656 1.55667 1.32908 1.04585 1.15882 0.80613 0.82290 0.80454 1.90872 1.39064 1.31813 1.85569 1.47179 1.54267 1.29899 1.06155 1.21365 0.99961 0.97063 0.80750 1.20749 0.99786 0.91231 1.01476 1.19819 0.98860 0.96581 0.93660 1.18457 0.95628 0.92022 0.88275 1.84786 1.20611 1.87592 1.37772 1.21336 1.00115 0.95682 0.99281 1.20928 0.97892 0.99533 0.94095 1.21106 1.00554 0.92469 0.99743 1.19748 0.97288 0.94943 0.95922 1.20386 0.94783 0.84383 0.97575 0.97690 0.89613 0.95411 0.95434 0.89605 0.97751 0.93027 0.92870 0.92944 0.77073 0.88214 0.91329 0.90242 0.89206 0.75517 0.85514 0.85409 0.85310 0.90017 0.89005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.89 8.08 37.16 0.30 -2.59 16 2 C 0.06 1.30 0.50 -155.66 -0.08 1.22 16 3 C -0.13 -2.90 8.08 37.15 0.30 -2.60 16 4 C -0.51 -13.21 8.01 -34.44 -0.28 -13.49 16 5 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 6 C 0.07 1.73 5.15 -17.82 -0.09 1.64 16 7 N -0.89 -23.45 9.35 55.43 0.52 -22.93 16 8 Si 0.89 20.68 29.54 -169.99 -5.02 15.65 16 9 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 10 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 12 C 0.15 3.22 4.51 -4.04 -0.02 3.20 16 13 N -0.73 -13.45 4.86 -65.22 -0.32 -13.77 16 14 C 0.71 12.95 8.32 -86.92 -0.72 12.22 16 15 O -0.59 -12.99 15.85 5.29 0.08 -12.91 16 16 N -0.64 -9.05 2.93 -180.20 -0.53 -9.58 16 17 C 0.13 1.60 6.42 -3.80 -0.02 1.58 16 18 C -0.09 -1.02 5.51 -28.04 -0.15 -1.17 16 19 C -0.09 -0.99 5.77 -104.45 -0.60 -1.59 16 20 C 0.10 1.03 6.66 -39.06 -0.26 0.77 16 21 O -0.50 -4.43 12.46 -19.44 -0.24 -4.68 16 22 C -0.15 -1.34 9.98 -39.54 -0.39 -1.73 16 23 C -0.11 -0.93 10.05 -39.70 -0.40 -1.33 16 24 C -0.12 -1.14 9.62 -39.44 -0.38 -1.52 16 25 C -0.08 -0.86 5.82 -104.57 -0.61 -1.47 16 26 C 0.15 1.76 6.07 -5.04 -0.03 1.73 16 27 H 0.00 0.08 6.86 -51.93 -0.36 -0.27 16 28 H 0.09 2.11 6.07 -51.92 -0.32 1.80 16 29 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.09 2.12 6.07 -51.93 -0.32 1.81 16 32 H 0.00 0.07 6.86 -51.93 -0.36 -0.29 16 33 H 0.26 6.64 8.31 -40.82 -0.34 6.30 16 34 H 0.05 1.22 8.14 -51.93 -0.42 0.79 16 35 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.39 6.50 3.82 -40.82 -0.16 6.34 16 37 H 0.10 1.33 7.09 -51.93 -0.37 0.96 16 38 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.09 0.86 7.65 -51.93 -0.40 0.46 16 41 H 0.39 1.86 9.06 45.56 0.41 2.28 16 42 H 0.13 0.94 8.06 -52.48 -0.42 0.52 16 43 H 0.13 0.82 8.06 -52.49 -0.42 0.39 16 44 H 0.13 0.99 8.05 -52.49 -0.42 0.57 16 45 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 46 H 0.09 1.05 5.97 -51.93 -0.31 0.74 16 LS Contribution 361.53 15.07 5.45 5.45 Total: -1.00 -30.87 361.53 -9.43 -40.30 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: -5.93 Total: 7.59 kcal Atomic # 6 Polarization: -1.69 SS G_CDS: -3.44 Total: -5.13 kcal Atomic # 7 Polarization: -45.95 SS G_CDS: -0.33 Total: -46.28 kcal Atomic # 8 Polarization: -17.43 SS G_CDS: -0.16 Total: -17.59 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -30.87 -9.43 -40.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599074944.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.435 kcal (2) G-P(sol) polarization free energy of solvation -30.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds