Wall clock time and date at job start Tue Mar 31 2020 12:32:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52994 * 109.47368 * 2 1 4 4 C 1.50697 * 109.47391 * 239.99331 * 2 1 3 5 5 H 1.07998 * 120.00301 * 240.00250 * 4 2 1 6 6 C 1.37885 * 119.99738 * 60.00370 * 4 2 1 7 7 N 1.31516 * 119.99905 * 0.02562 * 6 4 2 8 8 Si 1.86795 * 119.99985 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47514 * 89.99845 * 8 6 4 10 10 H 1.48498 * 109.46985 * 210.00221 * 8 6 4 11 11 H 1.48503 * 109.47097 * 329.99469 * 8 6 4 12 12 C 1.53004 * 109.46626 * 119.99718 * 2 1 3 13 13 N 1.46501 * 109.47366 * 299.99535 * 12 2 1 14 14 C 1.34770 * 120.00052 * 180.02562 * 13 12 2 15 15 O 1.21585 * 120.00527 * 4.97269 * 14 13 12 16 16 N 1.34777 * 119.99804 * 184.97513 * 14 13 12 17 17 C 1.47139 * 121.35435 * 174.81119 * 16 14 13 18 18 C 1.52788 * 107.95069 * 115.75968 * 17 16 14 19 19 C 1.50598 * 110.82015 * 47.47708 * 18 17 16 20 20 C 1.39464 * 117.63077 * 159.97692 * 19 18 17 21 21 O 1.35905 * 119.76575 * 359.53346 * 20 19 18 22 22 C 1.38407 * 120.46607 * 179.56435 * 20 19 18 23 23 C 1.38176 * 119.76392 * 359.90038 * 22 20 19 24 24 C 1.37979 * 119.77628 * 0.22884 * 23 22 20 25 25 C 1.37581 * 122.88667 * 339.87218 * 19 18 17 26 26 C 1.46676 * 121.33898 * 354.78721 * 16 14 13 27 27 H 1.08997 * 109.47435 * 300.00638 * 1 2 3 28 28 H 1.09007 * 109.46848 * 59.99898 * 1 2 3 29 29 H 1.08997 * 109.47823 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47062 * 179.97438 * 3 2 1 31 31 H 1.09005 * 109.46741 * 299.99675 * 3 2 1 32 32 H 1.08997 * 109.47363 * 59.99318 * 3 2 1 33 33 H 0.96991 * 119.99949 * 180.02562 * 7 6 4 34 34 H 1.08998 * 109.46803 * 179.97438 * 12 2 1 35 35 H 1.09003 * 109.46977 * 60.00261 * 12 2 1 36 36 H 0.96999 * 119.99675 * 0.02562 * 13 12 2 37 37 H 1.09000 * 109.71743 * 356.16040 * 17 16 14 38 38 H 1.08999 * 109.77291 * 235.39308 * 17 16 14 39 39 H 1.08994 * 109.20008 * 287.14625 * 18 17 16 40 40 H 1.09001 * 109.19614 * 167.80643 * 18 17 16 41 41 H 0.96704 * 113.99671 * 90.01078 * 21 20 19 42 42 H 1.08004 * 120.11905 * 179.97438 * 22 20 19 43 43 H 1.07997 * 120.10907 * 180.24938 * 23 22 20 44 44 H 1.07999 * 119.68567 * 180.02562 * 24 23 22 45 45 H 1.08999 * 109.43376 * 104.33201 * 26 16 14 46 46 H 1.08997 * 109.43199 * 344.46725 * 26 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7105 -1.2303 5 1 2.6532 -1.5886 -1.1312 6 6 1.6993 -0.2395 -2.4827 7 7 0.9437 0.8301 -2.6035 8 14 2.3214 -1.1206 -4.0078 9 1 1.3429 -2.1620 -4.4118 10 1 2.4868 -0.1417 -5.1121 11 1 3.6294 -1.7585 -3.7120 12 6 2.0399 -0.7212 1.2493 13 7 1.5516 -0.0305 2.4455 14 6 1.8775 -0.4906 3.6696 15 8 2.6492 -1.4233 3.7829 16 7 1.3480 0.0831 4.7681 17 6 1.5932 -0.4645 6.1116 18 6 2.3778 0.5766 6.9085 19 6 1.7540 1.9401 6.7675 20 6 2.0642 2.8963 7.7342 21 8 2.8955 2.5738 8.7599 22 6 1.5308 4.1711 7.6568 23 6 0.6867 4.4993 6.6132 24 6 0.3777 3.5526 5.6582 25 6 0.9058 2.2705 5.7359 26 6 0.5042 1.2791 4.6727 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 3.1300 1.4424 0.0005 31 1 1.6767 1.9562 -0.8901 32 1 1.6766 1.9563 0.8899 33 1 0.7091 1.1612 -3.4844 34 1 3.1298 -0.7216 1.2491 35 1 1.6765 -1.7489 1.2493 36 1 0.9937 0.7580 2.3564 37 1 2.1738 -1.3837 6.0337 38 1 0.6433 -0.6682 6.6058 39 1 3.4031 0.6117 6.5404 40 1 2.3841 0.2924 7.9608 41 1 3.8300 2.7414 8.5762 42 1 1.7744 4.9071 8.4087 43 1 0.2706 5.4935 6.5451 44 1 -0.2819 3.8108 4.8429 45 1 -0.5396 0.9988 4.8140 46 1 0.6274 1.7323 3.6891 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599074944.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:55 Heat of formation + Delta-G solvation = -64.539531 kcal Electronic energy + Delta-G solvation = -27120.447652 eV Core-core repulsion = 23395.303377 eV Total energy + Delta-G solvation = -3725.144275 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.78699 -40.64477 -38.48257 -37.91860 -36.76119 -35.15182 -33.58400 -32.37492 -32.16046 -29.73328 -27.55972 -27.54578 -27.16832 -26.23473 -24.63187 -23.06767 -22.30274 -20.64085 -20.53514 -19.17989 -18.96469 -17.80202 -17.49290 -17.05699 -16.76636 -16.59144 -16.39599 -16.12957 -15.42092 -15.25715 -15.11257 -14.77070 -14.72406 -14.41479 -14.29173 -13.98863 -13.54880 -13.42419 -13.18174 -13.14605 -13.06796 -12.68667 -12.65914 -12.58928 -12.36451 -12.24324 -12.16417 -12.10446 -11.48141 -11.38489 -11.31362 -11.12201 -10.70135 -10.39225 -10.16442 -9.66108 -9.55747 -9.39128 -8.01417 -6.16748 0.27543 0.33111 1.43533 1.46337 1.54084 1.63198 2.11661 2.46687 2.62002 3.01118 3.22338 3.28917 3.64170 3.71109 3.95090 4.07091 4.20912 4.27698 4.36830 4.43058 4.51837 4.54338 4.62221 4.66311 4.70919 4.81327 4.86860 4.90020 5.00265 5.05769 5.10764 5.14401 5.20575 5.37841 5.39778 5.46224 5.49843 5.56426 5.61536 5.68019 5.68658 5.86800 5.98514 6.15920 6.22489 6.44760 6.83033 6.87113 6.97910 7.50792 7.55195 8.97663 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.022791 B = 0.002945 C = 0.002743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.279333 B = 9506.354775 C =10206.492545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.053 3.947 3 C -0.118 4.118 4 C -0.529 4.529 5 H 0.044 0.956 6 C 0.030 3.970 7 N -0.898 5.898 8 Si 0.945 3.055 9 H -0.279 1.279 10 H -0.282 1.282 11 H -0.277 1.277 12 C 0.167 3.833 13 N -0.726 5.726 14 C 0.703 3.297 15 O -0.636 6.636 16 N -0.629 5.629 17 C 0.129 3.871 18 C -0.084 4.084 19 C -0.110 4.110 20 C 0.095 3.905 21 O -0.506 6.506 22 C -0.151 4.151 23 C -0.104 4.104 24 C -0.125 4.125 25 C -0.091 4.091 26 C 0.149 3.851 27 H 0.036 0.964 28 H 0.064 0.936 29 H 0.018 0.982 30 H 0.016 0.984 31 H 0.064 0.936 32 H 0.033 0.967 33 H 0.260 0.740 34 H 0.033 0.967 35 H 0.037 0.963 36 H 0.403 0.597 37 H 0.082 0.918 38 H 0.090 0.910 39 H 0.066 0.934 40 H 0.102 0.898 41 H 0.406 0.594 42 H 0.144 0.856 43 H 0.153 0.847 44 H 0.147 0.853 45 H 0.102 0.898 46 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.595 9.177 20.661 22.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.052 3.948 3 C -0.176 4.176 4 C -0.568 4.568 5 H 0.062 0.938 6 C -0.170 4.170 7 N -0.537 5.537 8 Si 0.771 3.229 9 H -0.205 1.205 10 H -0.208 1.208 11 H -0.202 1.202 12 C 0.042 3.958 13 N -0.382 5.382 14 C 0.405 3.595 15 O -0.518 6.518 16 N -0.366 5.366 17 C 0.006 3.994 18 C -0.122 4.122 19 C -0.111 4.111 20 C 0.050 3.950 21 O -0.318 6.318 22 C -0.169 4.169 23 C -0.122 4.122 24 C -0.144 4.144 25 C -0.092 4.092 26 C 0.027 3.973 27 H 0.054 0.946 28 H 0.082 0.918 29 H 0.037 0.963 30 H 0.035 0.965 31 H 0.083 0.917 32 H 0.052 0.948 33 H 0.070 0.930 34 H 0.052 0.948 35 H 0.055 0.945 36 H 0.242 0.758 37 H 0.101 0.899 38 H 0.108 0.892 39 H 0.085 0.915 40 H 0.120 0.880 41 H 0.264 0.736 42 H 0.162 0.838 43 H 0.171 0.829 44 H 0.165 0.835 45 H 0.120 0.880 46 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -2.633 8.430 20.843 22.637 hybrid contribution 0.764 -0.138 -1.318 1.530 sum -1.869 8.292 19.525 21.295 Atomic orbital electron populations 1.21653 0.96937 0.98716 1.00341 1.18350 0.93375 0.92970 0.90099 1.21648 0.97817 0.97876 1.00245 1.21269 1.31776 1.12199 0.91555 0.93758 1.25429 0.95139 0.95573 1.00872 1.69896 1.36985 1.23188 1.23615 0.85768 0.78647 0.78510 0.79929 1.20471 1.20801 1.20178 1.21155 0.96703 0.94709 0.83200 1.45356 1.55887 1.33107 1.03894 1.15994 0.80402 0.82004 0.81114 1.90843 1.40939 1.33736 1.86250 1.47186 1.53535 1.30281 1.05605 1.21529 1.01055 0.96835 0.79990 1.20618 0.98762 0.91078 1.01721 1.19918 0.99768 0.96792 0.94578 1.18571 0.95955 0.92304 0.88168 1.84737 1.21863 1.87703 1.37533 1.21613 0.99828 0.95610 0.99836 1.21271 0.97119 1.00487 0.93340 1.21343 1.00627 0.91877 1.00515 1.19770 0.98108 0.95520 0.95810 1.20599 0.95227 0.83396 0.98091 0.94560 0.91767 0.96268 0.96506 0.91713 0.94767 0.92996 0.94815 0.94477 0.75810 0.89910 0.89214 0.91512 0.87991 0.73584 0.83840 0.82884 0.83515 0.88024 0.88895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.21 8.08 71.98 0.58 -4.63 16 2 C 0.05 2.44 0.50 -52.93 -0.03 2.42 16 3 C -0.12 -5.24 8.08 71.98 0.58 -4.66 16 4 C -0.53 -28.06 8.01 25.60 0.21 -27.85 16 5 H 0.04 2.41 7.74 -2.91 -0.02 2.38 16 6 C 0.03 1.56 5.15 84.66 0.44 1.99 16 7 N -0.90 -47.43 9.35 21.45 0.20 -47.23 16 8 Si 0.94 42.52 29.54 68.60 2.03 44.54 16 9 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 10 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 11 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 12 C 0.17 7.27 4.51 86.38 0.39 7.66 16 13 N -0.73 -26.15 4.86 -478.54 -2.33 -28.48 16 14 C 0.70 25.64 8.32 179.06 1.49 27.13 16 15 O -0.64 -28.36 15.85 -3.98 -0.06 -28.42 16 16 N -0.63 -17.24 2.93 -842.31 -2.47 -19.71 16 17 C 0.13 3.03 6.42 86.19 0.55 3.58 16 18 C -0.08 -1.73 5.51 29.75 0.16 -1.57 16 19 C -0.11 -2.27 5.77 -19.76 -0.11 -2.39 16 20 C 0.09 1.75 6.66 22.61 0.15 1.90 16 21 O -0.51 -8.10 12.46 -92.48 -1.15 -9.25 16 22 C -0.15 -2.36 9.98 22.30 0.22 -2.13 16 23 C -0.10 -1.48 10.05 22.19 0.22 -1.26 16 24 C -0.13 -2.02 9.62 22.36 0.22 -1.80 16 25 C -0.09 -1.81 5.82 -19.83 -0.12 -1.93 16 26 C 0.15 3.12 6.07 85.64 0.52 3.64 16 27 H 0.04 1.32 6.86 -2.39 -0.02 1.30 16 28 H 0.06 3.12 6.07 -2.38 -0.01 3.11 16 29 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.06 3.17 6.07 -2.38 -0.01 3.16 16 32 H 0.03 1.27 6.86 -2.39 -0.02 1.25 16 33 H 0.26 13.24 8.31 -92.71 -0.77 12.47 16 34 H 0.03 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.40 12.59 3.82 -92.71 -0.35 12.24 16 37 H 0.08 2.24 7.09 -2.39 -0.02 2.22 16 38 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 39 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 40 H 0.10 1.82 7.65 -2.39 -0.02 1.80 16 41 H 0.41 3.23 9.06 -74.05 -0.67 2.55 16 42 H 0.14 1.70 8.06 -2.91 -0.02 1.67 16 43 H 0.15 1.35 8.06 -2.91 -0.02 1.33 16 44 H 0.15 1.75 8.05 -2.91 -0.02 1.73 16 45 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 46 H 0.09 1.90 5.97 -2.39 -0.01 1.89 16 Total: -1.00 -66.46 361.53 1.67 -64.78 By element: Atomic # 1 Polarization: 23.67 SS G_CDS: -0.02 Total: 23.65 kcal Atomic # 6 Polarization: -5.37 SS G_CDS: 5.47 Total: 0.10 kcal Atomic # 7 Polarization: -90.82 SS G_CDS: -4.60 Total: -95.42 kcal Atomic # 8 Polarization: -36.45 SS G_CDS: -1.22 Total: -37.67 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 2.03 Total: 44.54 kcal Total: -66.46 1.67 -64.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599074944.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.245 kcal (2) G-P(sol) polarization free energy of solvation -66.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds