Wall clock time and date at job start Tue Mar 31 2020 12:11:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.46770 * 2 1 4 4 C 1.52994 * 109.47415 * 239.99885 * 2 1 3 5 5 C 1.50704 * 109.46846 * 119.99644 * 2 1 3 6 6 O 1.21275 * 120.00089 * 0.02562 * 5 2 1 7 7 N 1.34776 * 119.99609 * 180.02562 * 5 2 1 8 8 C 1.46504 * 119.99992 * 180.02562 * 7 5 2 9 9 C 1.52995 * 109.47377 * 180.02562 * 8 7 5 10 10 N 1.46494 * 109.47394 * 179.97438 * 9 8 7 11 11 C 1.34776 * 120.00009 * 179.97438 * 10 9 8 12 12 O 1.21609 * 120.00181 * 0.02562 * 11 10 9 13 13 C 1.47435 * 119.99851 * 180.02562 * 11 10 9 14 14 C 1.39235 * 120.28378 * 356.68142 * 13 11 10 15 15 C 1.38223 * 120.09183 * 180.28231 * 14 13 11 16 16 C 1.38824 * 120.67578 * 359.69536 * 15 14 13 17 17 C 1.37601 * 120.57302 * 0.02562 * 16 15 14 18 18 C 1.40712 * 119.87956 * 0.02562 * 17 16 15 19 19 C 1.40891 * 120.32906 * 179.97438 * 18 17 16 20 20 H 1.07992 * 120.00234 * 145.79747 * 19 18 17 21 21 C 1.40273 * 119.99571 * 325.79352 * 19 18 17 22 22 N 1.30635 * 120.00253 * 340.74281 * 21 19 18 23 23 Si 1.86798 * 119.99912 * 160.74547 * 21 19 18 24 24 H 1.48507 * 109.47415 * 179.97438 * 23 21 19 25 25 H 1.48498 * 109.47275 * 299.99863 * 23 21 19 26 26 H 1.48501 * 109.47305 * 59.99898 * 23 21 19 27 27 H 1.08992 * 109.47375 * 299.99817 * 1 2 3 28 28 H 1.08999 * 109.47064 * 60.00601 * 1 2 3 29 29 H 1.09004 * 109.46949 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46758 * 179.97438 * 3 2 1 31 31 H 1.08998 * 109.47326 * 299.99722 * 3 2 1 32 32 H 1.09005 * 109.47058 * 59.99770 * 3 2 1 33 33 H 1.09004 * 109.47129 * 299.99972 * 4 2 1 34 34 H 1.08998 * 109.47006 * 60.00078 * 4 2 1 35 35 H 1.09004 * 109.47441 * 179.97438 * 4 2 1 36 36 H 0.97004 * 120.00588 * 0.02562 * 7 5 2 37 37 H 1.08999 * 109.46632 * 60.00041 * 8 7 5 38 38 H 1.09005 * 109.46999 * 300.00374 * 8 7 5 39 39 H 1.09004 * 109.47250 * 59.99797 * 9 8 7 40 40 H 1.09005 * 109.47069 * 299.99973 * 9 8 7 41 41 H 0.96994 * 119.99831 * 359.97438 * 10 9 8 42 42 H 1.08001 * 119.94893 * 359.97438 * 14 13 11 43 43 H 1.07988 * 119.65914 * 179.72052 * 15 14 13 44 44 H 1.08002 * 119.71756 * 180.02562 * 16 15 14 45 45 H 1.07997 * 120.06577 * 180.02562 * 17 16 15 46 46 H 0.97003 * 120.00071 * 354.83739 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2491 5 6 2.0323 -0.7104 1.2306 6 8 1.2442 -1.1716 2.0286 7 7 3.3574 -0.8330 1.4441 8 6 3.8457 -1.5241 2.6400 9 6 5.3757 -1.5229 2.6408 10 7 5.8640 -2.2133 3.8370 11 6 7.1891 -2.3359 4.0505 12 8 7.9794 -1.8729 3.2505 13 6 7.6806 -3.0313 5.2541 14 6 6.7829 -3.5030 6.2082 15 6 7.2483 -4.1492 7.3380 16 6 8.6091 -4.3419 7.5337 17 6 9.5202 -3.8921 6.6059 18 6 9.0726 -3.2301 5.4476 19 6 9.9973 -2.7652 4.4917 20 1 9.7408 -2.7752 3.4428 21 6 11.2512 -2.2891 4.9026 22 7 11.4360 -1.9210 6.1423 23 14 12.6567 -2.1814 3.6769 24 1 13.8660 -1.6502 4.3558 25 1 12.9462 -3.5335 3.1356 26 1 12.2754 -1.2742 2.5648 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 3.1299 1.4426 0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6765 1.9564 0.8900 33 1 1.6768 -1.7489 -1.2491 34 1 1.6768 -0.2074 -2.1391 35 1 3.1301 -0.7208 -1.2494 36 1 3.9878 -0.4638 0.8060 37 1 3.4828 -2.5519 2.6393 38 1 3.4819 -1.0109 3.5302 39 1 5.7383 -0.4949 2.6416 40 1 5.7399 -2.0358 1.7506 41 1 5.2337 -2.5823 4.4752 42 1 5.7217 -3.3593 6.0677 43 1 6.5461 -4.5083 8.0756 44 1 8.9557 -4.8492 8.4219 45 1 10.5770 -4.0467 6.7662 46 1 10.6885 -1.9057 6.7603 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601028064.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:40 Heat of formation + Delta-G solvation = -77.588219 kcal Electronic energy + Delta-G solvation = -25928.208836 eV Core-core repulsion = 22202.498728 eV Total energy + Delta-G solvation = -3725.710109 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.39995 -39.09125 -37.16973 -36.06291 -35.57835 -34.12638 -33.41029 -30.39311 -29.50239 -28.55989 -27.74943 -27.37529 -25.30501 -23.91178 -22.43063 -22.00081 -20.92480 -19.71197 -19.48636 -18.11584 -17.10399 -16.56307 -16.09839 -15.95746 -15.13447 -14.98444 -14.76267 -14.41481 -14.20092 -14.06824 -13.97735 -13.87469 -13.61275 -13.19802 -12.74896 -12.63691 -12.58773 -12.29875 -12.21057 -12.08787 -11.99814 -11.77915 -11.58894 -11.32650 -11.29195 -11.16118 -10.93984 -10.77725 -10.39103 -10.19780 -9.93352 -9.65110 -9.30489 -9.10724 -8.60440 -8.52035 -7.82538 -7.63911 -7.18030 -4.49762 2.19824 2.43183 2.71181 2.80105 3.18129 3.28567 3.38596 3.94257 3.99737 4.02565 4.29585 4.38213 4.49016 4.60415 4.66698 4.89254 5.03016 5.15988 5.22437 5.32631 5.37725 5.42900 5.43622 5.50612 5.54766 5.69532 5.79332 5.82270 5.85126 5.88373 5.94294 6.02204 6.13242 6.19804 6.46271 6.68680 6.94117 6.97961 7.23649 7.25019 7.46265 7.56678 7.69351 7.85203 7.99384 8.04532 8.17214 8.28381 8.69390 8.82192 9.26699 10.01102 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.017122 B = 0.002606 C = 0.002318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1634.973961 B =10741.030637 C =12073.957630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.087 4.087 3 C -0.142 4.142 4 C -0.142 4.142 5 C 0.523 3.477 6 O -0.539 6.539 7 N -0.724 5.724 8 C 0.108 3.892 9 C 0.116 3.884 10 N -0.747 5.747 11 C 0.566 3.434 12 O -0.536 6.536 13 C -0.267 4.267 14 C -0.043 4.043 15 C -0.259 4.259 16 C -0.075 4.075 17 C -0.200 4.200 18 C 0.121 3.879 19 C -0.466 4.466 20 H 0.105 0.895 21 C 0.031 3.969 22 N -0.792 5.792 23 Si 1.071 2.929 24 H -0.274 1.274 25 H -0.274 1.274 26 H -0.273 1.273 27 H 0.062 0.938 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.069 0.931 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.069 0.931 35 H 0.061 0.939 36 H 0.402 0.598 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.066 0.934 40 H 0.066 0.934 41 H 0.394 0.606 42 H 0.092 0.908 43 H 0.094 0.906 44 H 0.094 0.906 45 H 0.107 0.893 46 H 0.298 0.702 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.574 4.052 -11.070 18.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.090 4.090 3 C -0.199 4.199 4 C -0.199 4.199 5 C 0.309 3.691 6 O -0.415 6.415 7 N -0.377 5.377 8 C -0.016 4.016 9 C -0.009 4.009 10 N -0.403 5.403 11 C 0.360 3.640 12 O -0.414 6.414 13 C -0.272 4.272 14 C -0.062 4.062 15 C -0.278 4.278 16 C -0.094 4.094 17 C -0.219 4.219 18 C 0.116 3.884 19 C -0.492 4.492 20 H 0.123 0.877 21 C -0.191 4.191 22 N -0.416 5.416 23 Si 0.894 3.106 24 H -0.199 1.199 25 H -0.199 1.199 26 H -0.198 1.198 27 H 0.081 0.919 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.088 0.912 35 H 0.080 0.920 36 H 0.237 0.763 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.084 0.916 40 H 0.085 0.915 41 H 0.228 0.772 42 H 0.110 0.890 43 H 0.112 0.888 44 H 0.112 0.888 45 H 0.125 0.875 46 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -12.927 4.465 -11.162 17.653 hybrid contribution -1.772 -0.432 0.419 1.872 sum -14.699 4.033 -10.742 18.648 Atomic orbital electron populations 1.21661 0.91873 1.02894 1.02072 1.20827 0.98135 0.96481 0.93537 1.21885 1.01382 0.93657 1.03011 1.21883 1.01376 1.00680 0.95982 1.20591 0.81889 0.79350 0.87312 1.90702 1.55300 1.48447 1.47070 1.45848 1.07335 1.58979 1.25527 1.21485 0.93780 0.98092 0.88239 1.21172 0.91293 0.98367 0.90050 1.45839 1.08075 1.61518 1.24857 1.18373 0.80282 0.78997 0.86353 1.90680 1.54286 1.49250 1.47207 1.19341 0.94591 1.14855 0.98369 1.20730 0.96393 0.95360 0.93699 1.20254 0.94922 1.12375 1.00250 1.20756 0.93494 0.97894 0.97270 1.21257 0.98422 1.04678 0.97582 1.17504 0.90664 0.88986 0.91252 1.21170 0.97978 1.32355 0.97744 0.87715 1.27281 1.01004 0.92104 0.98719 1.70392 1.37699 1.28556 1.04905 0.83555 0.74321 0.78049 0.74704 1.19924 1.19939 1.19802 0.91911 0.91981 0.91910 0.91961 0.91226 0.91952 0.91952 0.91234 0.91964 0.76271 0.90851 0.90866 0.91552 0.91547 0.77153 0.89047 0.88827 0.88826 0.87499 0.88781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.01 7.76 37.16 0.29 -0.73 16 2 C -0.09 -0.68 0.87 -155.66 -0.14 -0.82 16 3 C -0.14 -0.90 8.37 37.16 0.31 -0.59 16 4 C -0.14 -0.89 8.37 37.15 0.31 -0.58 16 5 C 0.52 5.84 6.48 -10.98 -0.07 5.76 16 6 O -0.54 -8.15 15.98 5.56 0.09 -8.06 16 7 N -0.72 -7.17 5.34 -60.29 -0.32 -7.50 16 8 C 0.11 1.24 5.79 -4.04 -0.02 1.22 16 9 C 0.12 1.59 5.79 -4.05 -0.02 1.57 16 10 N -0.75 -12.63 5.51 -61.38 -0.34 -12.97 16 11 C 0.57 12.75 7.73 -12.52 -0.10 12.65 16 12 O -0.54 -13.76 13.56 5.27 0.07 -13.69 16 13 C -0.27 -6.38 5.92 -104.36 -0.62 -7.00 16 14 C -0.04 -0.89 9.53 -39.22 -0.37 -1.27 16 15 C -0.26 -5.37 10.03 -39.37 -0.39 -5.77 16 16 C -0.08 -1.65 10.01 -39.60 -0.40 -2.05 16 17 C -0.20 -4.94 7.87 -38.88 -0.31 -5.25 16 18 C 0.12 3.17 5.17 -106.54 -0.55 2.62 16 19 C -0.47 -12.63 7.65 -37.81 -0.29 -12.92 16 20 H 0.11 2.95 5.92 -52.49 -0.31 2.64 16 21 C 0.03 0.79 5.04 -17.30 -0.09 0.70 16 22 N -0.79 -21.03 12.57 55.56 0.70 -20.34 16 23 Si 1.07 22.20 29.98 -169.99 -5.10 17.11 16 24 H -0.27 -5.57 7.11 56.52 0.40 -5.16 16 25 H -0.27 -5.41 7.11 56.52 0.40 -5.00 16 26 H -0.27 -5.55 7.11 56.52 0.40 -5.14 16 27 H 0.06 0.56 8.10 -51.93 -0.42 0.14 16 28 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.56 8.10 -51.93 -0.42 0.14 16 30 H 0.06 0.35 7.56 -51.93 -0.39 -0.04 16 31 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.06 0.35 7.57 -51.93 -0.39 -0.05 16 36 H 0.40 3.09 7.31 -40.82 -0.30 2.79 16 37 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 38 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.39 5.80 6.51 -40.82 -0.27 5.54 16 42 H 0.09 1.56 6.41 -52.49 -0.34 1.23 16 43 H 0.09 1.69 8.06 -52.49 -0.42 1.26 16 44 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16 45 H 0.11 2.69 6.94 -52.49 -0.36 2.32 16 46 H 0.30 8.11 6.55 -40.82 -0.27 7.84 16 LS Contribution 377.01 15.07 5.68 5.68 Total: -1.00 -31.96 377.01 -8.59 -40.55 By element: Atomic # 1 Polarization: 18.54 SS G_CDS: -6.92 Total: 11.63 kcal Atomic # 6 Polarization: -9.96 SS G_CDS: -2.46 Total: -12.42 kcal Atomic # 7 Polarization: -40.84 SS G_CDS: 0.04 Total: -40.80 kcal Atomic # 8 Polarization: -21.91 SS G_CDS: 0.16 Total: -21.75 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.10 Total: 17.11 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -31.96 -8.59 -40.55 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601028064.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.043 kcal (2) G-P(sol) polarization free energy of solvation -31.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds