Wall clock time and date at job start Tue Mar 31 2020 12:11:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.46770 * 2 1 4 4 C 1.52994 * 109.47415 * 239.99885 * 2 1 3 5 5 C 1.50704 * 109.46846 * 119.99644 * 2 1 3 6 6 O 1.21275 * 120.00089 * 0.02562 * 5 2 1 7 7 N 1.34776 * 119.99609 * 180.02562 * 5 2 1 8 8 C 1.46504 * 119.99992 * 180.02562 * 7 5 2 9 9 C 1.52995 * 109.47377 * 180.02562 * 8 7 5 10 10 N 1.46494 * 109.47394 * 179.97438 * 9 8 7 11 11 C 1.34776 * 120.00009 * 179.97438 * 10 9 8 12 12 O 1.21609 * 120.00181 * 0.02562 * 11 10 9 13 13 C 1.47435 * 119.99851 * 180.02562 * 11 10 9 14 14 C 1.39235 * 120.28378 * 356.68142 * 13 11 10 15 15 C 1.38223 * 120.09183 * 180.28231 * 14 13 11 16 16 C 1.38824 * 120.67578 * 359.69536 * 15 14 13 17 17 C 1.37601 * 120.57302 * 0.02562 * 16 15 14 18 18 C 1.40712 * 119.87956 * 0.02562 * 17 16 15 19 19 C 1.40891 * 120.32906 * 179.97438 * 18 17 16 20 20 H 1.07992 * 120.00234 * 145.79747 * 19 18 17 21 21 C 1.40273 * 119.99571 * 325.79352 * 19 18 17 22 22 N 1.30635 * 120.00253 * 340.74281 * 21 19 18 23 23 Si 1.86798 * 119.99912 * 160.74547 * 21 19 18 24 24 H 1.48507 * 109.47415 * 179.97438 * 23 21 19 25 25 H 1.48498 * 109.47275 * 299.99863 * 23 21 19 26 26 H 1.48501 * 109.47305 * 59.99898 * 23 21 19 27 27 H 1.08992 * 109.47375 * 299.99817 * 1 2 3 28 28 H 1.08999 * 109.47064 * 60.00601 * 1 2 3 29 29 H 1.09004 * 109.46949 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46758 * 179.97438 * 3 2 1 31 31 H 1.08998 * 109.47326 * 299.99722 * 3 2 1 32 32 H 1.09005 * 109.47058 * 59.99770 * 3 2 1 33 33 H 1.09004 * 109.47129 * 299.99972 * 4 2 1 34 34 H 1.08998 * 109.47006 * 60.00078 * 4 2 1 35 35 H 1.09004 * 109.47441 * 179.97438 * 4 2 1 36 36 H 0.97004 * 120.00588 * 0.02562 * 7 5 2 37 37 H 1.08999 * 109.46632 * 60.00041 * 8 7 5 38 38 H 1.09005 * 109.46999 * 300.00374 * 8 7 5 39 39 H 1.09004 * 109.47250 * 59.99797 * 9 8 7 40 40 H 1.09005 * 109.47069 * 299.99973 * 9 8 7 41 41 H 0.96994 * 119.99831 * 359.97438 * 10 9 8 42 42 H 1.08001 * 119.94893 * 359.97438 * 14 13 11 43 43 H 1.07988 * 119.65914 * 179.72052 * 15 14 13 44 44 H 1.08002 * 119.71756 * 180.02562 * 16 15 14 45 45 H 1.07997 * 120.06577 * 180.02562 * 17 16 15 46 46 H 0.97003 * 120.00071 * 354.83739 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2491 5 6 2.0323 -0.7104 1.2306 6 8 1.2442 -1.1716 2.0286 7 7 3.3574 -0.8330 1.4441 8 6 3.8457 -1.5241 2.6400 9 6 5.3757 -1.5229 2.6408 10 7 5.8640 -2.2133 3.8370 11 6 7.1891 -2.3359 4.0505 12 8 7.9794 -1.8729 3.2505 13 6 7.6806 -3.0313 5.2541 14 6 6.7829 -3.5030 6.2082 15 6 7.2483 -4.1492 7.3380 16 6 8.6091 -4.3419 7.5337 17 6 9.5202 -3.8921 6.6059 18 6 9.0726 -3.2301 5.4476 19 6 9.9973 -2.7652 4.4917 20 1 9.7408 -2.7752 3.4428 21 6 11.2512 -2.2891 4.9026 22 7 11.4360 -1.9210 6.1423 23 14 12.6567 -2.1814 3.6769 24 1 13.8660 -1.6502 4.3558 25 1 12.9462 -3.5335 3.1356 26 1 12.2754 -1.2742 2.5648 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 3.1299 1.4426 0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6765 1.9564 0.8900 33 1 1.6768 -1.7489 -1.2491 34 1 1.6768 -0.2074 -2.1391 35 1 3.1301 -0.7208 -1.2494 36 1 3.9878 -0.4638 0.8060 37 1 3.4828 -2.5519 2.6393 38 1 3.4819 -1.0109 3.5302 39 1 5.7383 -0.4949 2.6416 40 1 5.7399 -2.0358 1.7506 41 1 5.2337 -2.5823 4.4752 42 1 5.7217 -3.3593 6.0677 43 1 6.5461 -4.5083 8.0756 44 1 8.9557 -4.8492 8.4219 45 1 10.5770 -4.0467 6.7662 46 1 10.6885 -1.9057 6.7603 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601028064.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:39 Heat of formation + Delta-G solvation = -98.679231 kcal Electronic energy + Delta-G solvation = -25929.123411 eV Core-core repulsion = 22202.498728 eV Total energy + Delta-G solvation = -3726.624684 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.29340 -40.78896 -38.87990 -37.05246 -36.57285 -35.88294 -34.83716 -32.07155 -31.29525 -29.85004 -28.23038 -28.01421 -27.11320 -25.12180 -23.80388 -23.18168 -22.68614 -21.25475 -20.48093 -19.91347 -18.27959 -17.74177 -17.22275 -16.99075 -16.62287 -16.50074 -16.08188 -15.82012 -15.63215 -15.43996 -15.16547 -15.03296 -14.71454 -14.42026 -14.28997 -13.96131 -13.72639 -13.32744 -13.10793 -12.99498 -12.97216 -12.84526 -12.82390 -12.67831 -12.63401 -12.49974 -12.02217 -11.94888 -11.91805 -11.86508 -11.47515 -10.96265 -10.82020 -10.39871 -10.24505 -10.06903 -9.62132 -9.50112 -9.10731 -6.46525 0.38746 0.90393 1.47636 1.56413 1.62755 1.77594 1.81875 2.22657 2.31659 2.65699 2.74411 3.54144 3.55366 3.63909 3.83614 3.90179 3.98641 4.20432 4.24523 4.26479 4.35013 4.44978 4.69769 4.71276 4.72693 4.78077 4.81850 4.86126 4.88141 4.94112 4.94395 5.00232 5.13233 5.19894 5.27395 5.32473 5.35336 5.42292 5.50770 5.64759 5.70161 5.88571 5.96015 6.19114 6.32710 6.42803 6.64368 6.83620 6.90386 7.14566 7.55242 8.04359 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.017122 B = 0.002606 C = 0.002318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1634.973961 B =10741.030637 C =12073.957630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.082 4.082 3 C -0.140 4.140 4 C -0.140 4.140 5 C 0.518 3.482 6 O -0.583 6.583 7 N -0.715 5.715 8 C 0.121 3.879 9 C 0.121 3.879 10 N -0.727 5.727 11 C 0.561 3.439 12 O -0.574 6.574 13 C -0.284 4.284 14 C -0.042 4.042 15 C -0.246 4.246 16 C -0.072 4.072 17 C -0.225 4.225 18 C 0.095 3.905 19 C -0.508 4.508 20 H 0.083 0.917 21 C -0.004 4.004 22 N -0.817 5.817 23 Si 1.116 2.884 24 H -0.266 1.266 25 H -0.260 1.260 26 H -0.269 1.269 27 H 0.047 0.953 28 H 0.087 0.913 29 H 0.048 0.952 30 H 0.070 0.930 31 H 0.089 0.911 32 H 0.051 0.949 33 H 0.052 0.948 34 H 0.089 0.911 35 H 0.070 0.930 36 H 0.415 0.585 37 H 0.073 0.927 38 H 0.071 0.929 39 H 0.065 0.935 40 H 0.067 0.933 41 H 0.407 0.593 42 H 0.135 0.865 43 H 0.135 0.865 44 H 0.124 0.876 45 H 0.089 0.911 46 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.479 4.056 -11.662 20.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.085 4.085 3 C -0.198 4.198 4 C -0.197 4.197 5 C 0.306 3.694 6 O -0.462 6.462 7 N -0.368 5.368 8 C -0.003 4.003 9 C -0.003 4.003 10 N -0.383 5.383 11 C 0.354 3.646 12 O -0.455 6.455 13 C -0.289 4.289 14 C -0.060 4.060 15 C -0.265 4.265 16 C -0.091 4.091 17 C -0.245 4.245 18 C 0.091 3.909 19 C -0.536 4.536 20 H 0.101 0.899 21 C -0.219 4.219 22 N -0.441 5.441 23 Si 0.933 3.067 24 H -0.190 1.190 25 H -0.184 1.184 26 H -0.194 1.194 27 H 0.066 0.934 28 H 0.105 0.895 29 H 0.067 0.933 30 H 0.089 0.911 31 H 0.108 0.892 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.108 0.892 35 H 0.089 0.911 36 H 0.252 0.748 37 H 0.091 0.909 38 H 0.090 0.910 39 H 0.083 0.917 40 H 0.085 0.915 41 H 0.244 0.756 42 H 0.153 0.847 43 H 0.153 0.847 44 H 0.142 0.858 45 H 0.108 0.892 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -14.874 4.464 -11.758 19.478 hybrid contribution -1.477 -0.504 0.690 1.706 sum -16.351 3.961 -11.068 20.138 Atomic orbital electron populations 1.21674 0.92072 1.02134 1.02581 1.20873 0.97965 0.97234 0.92473 1.21905 1.01917 0.92385 1.03548 1.21902 1.01927 1.00138 0.95762 1.21271 0.81602 0.78698 0.87815 1.90680 1.56345 1.50429 1.48794 1.45771 1.07466 1.58420 1.25180 1.21244 0.91788 0.98318 0.88982 1.21243 0.92690 0.97794 0.88591 1.45562 1.06390 1.60460 1.25847 1.18348 0.81761 0.78706 0.85739 1.90662 1.55847 1.50740 1.48292 1.19767 0.94507 1.14855 0.99761 1.21168 0.98175 0.94034 0.92670 1.20809 0.95003 1.10141 1.00509 1.21162 0.93900 0.96673 0.97344 1.21214 0.98329 1.06342 0.98597 1.17912 0.92051 0.89058 0.91906 1.21102 0.99749 1.35794 0.96952 0.89892 1.28493 1.02954 0.90820 0.99620 1.70503 1.36808 1.31326 1.05465 0.83020 0.71965 0.78816 0.72884 1.19028 1.18404 1.19399 0.93364 0.89466 0.93322 0.91140 0.89182 0.92967 0.92909 0.89199 0.91118 0.74787 0.90893 0.91028 0.91716 0.91469 0.75575 0.84739 0.84703 0.85826 0.89241 0.90512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.87 7.76 71.98 0.56 -1.31 16 2 C -0.08 -1.15 0.87 -52.93 -0.05 -1.19 16 3 C -0.14 -1.44 8.37 71.98 0.60 -0.84 16 4 C -0.14 -1.41 8.37 71.98 0.60 -0.81 16 5 C 0.52 10.99 6.48 87.66 0.57 11.56 16 6 O -0.58 -17.42 15.98 -3.01 -0.05 -17.47 16 7 N -0.72 -13.02 5.34 -463.06 -2.47 -15.49 16 8 C 0.12 2.59 5.79 86.38 0.50 3.09 16 9 C 0.12 3.16 5.79 86.38 0.50 3.66 16 10 N -0.73 -23.51 5.51 -466.37 -2.57 -26.08 16 11 C 0.56 25.31 7.73 86.67 0.67 25.98 16 12 O -0.57 -30.31 13.56 -4.06 -0.06 -30.36 16 13 C -0.28 -13.53 5.92 -19.70 -0.12 -13.65 16 14 C -0.04 -1.63 9.53 22.51 0.21 -1.41 16 15 C -0.25 -9.29 10.03 22.41 0.22 -9.07 16 16 C -0.07 -3.04 10.01 22.26 0.22 -2.81 16 17 C -0.23 -11.36 7.87 22.72 0.18 -11.18 16 18 C 0.09 5.14 5.17 -21.11 -0.11 5.03 16 19 C -0.51 -28.97 7.65 23.41 0.18 -28.79 16 20 H 0.08 4.97 5.92 -2.91 -0.02 4.95 16 21 C 0.00 -0.19 5.04 85.37 0.43 0.24 16 22 N -0.82 -45.41 12.57 21.88 0.28 -45.13 16 23 Si 1.12 46.36 29.98 68.60 2.06 48.42 16 24 H -0.27 -10.54 7.11 99.48 0.71 -9.83 16 25 H -0.26 -10.03 7.11 99.48 0.71 -9.32 16 26 H -0.27 -10.85 7.11 99.48 0.71 -10.15 16 27 H 0.05 0.84 8.10 -2.39 -0.02 0.82 16 28 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.05 0.84 8.10 -2.38 -0.02 0.82 16 30 H 0.07 0.61 7.56 -2.39 -0.02 0.59 16 31 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.05 0.65 8.14 -2.38 -0.02 0.63 16 33 H 0.05 0.65 8.14 -2.38 -0.02 0.63 16 34 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 35 H 0.07 0.60 7.57 -2.39 -0.02 0.58 16 36 H 0.41 5.52 7.31 -92.71 -0.68 4.84 16 37 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.07 1.60 8.14 -2.38 -0.02 1.58 16 39 H 0.06 1.76 8.14 -2.38 -0.02 1.74 16 40 H 0.07 1.80 8.14 -2.38 -0.02 1.78 16 41 H 0.41 10.89 6.51 -92.71 -0.60 10.28 16 42 H 0.13 3.98 6.41 -2.91 -0.02 3.97 16 43 H 0.14 4.06 8.06 -2.92 -0.02 4.04 16 44 H 0.12 4.39 8.06 -2.91 -0.02 4.36 16 45 H 0.09 4.72 6.94 -2.91 -0.02 4.70 16 46 H 0.28 16.20 6.55 -92.71 -0.61 15.59 16 Total: -1.00 -73.74 377.01 2.25 -71.50 By element: Atomic # 1 Polarization: 36.24 SS G_CDS: -0.12 Total: 36.12 kcal Atomic # 6 Polarization: -26.68 SS G_CDS: 5.18 Total: -21.50 kcal Atomic # 7 Polarization: -81.93 SS G_CDS: -4.77 Total: -86.70 kcal Atomic # 8 Polarization: -47.73 SS G_CDS: -0.10 Total: -47.83 kcal Atomic # 14 Polarization: 46.36 SS G_CDS: 2.06 Total: 48.42 kcal Total: -73.74 2.25 -71.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601028064.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.183 kcal (2) G-P(sol) polarization free energy of solvation -73.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds