Wall clock time and date at job start Tue Mar 31 2020 12:32:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47415 * 2 1 4 4 C 1.53003 * 109.47246 * 240.00176 * 2 1 3 5 5 N 1.46504 * 109.47168 * 119.99868 * 2 1 3 6 6 C 1.34778 * 119.99625 * 60.00344 * 5 2 1 7 7 O 1.21288 * 120.00023 * 359.97438 * 6 5 2 8 8 C 1.50702 * 119.99932 * 180.02562 * 6 5 2 9 9 C 1.52995 * 109.47299 * 179.97438 * 8 6 5 10 10 N 1.46494 * 109.47394 * 179.97438 * 9 8 6 11 11 C 1.34776 * 120.00009 * 179.97438 * 10 9 8 12 12 O 1.21609 * 120.00181 * 0.02562 * 11 10 9 13 13 C 1.47435 * 119.99851 * 180.02562 * 11 10 9 14 14 C 1.39235 * 120.28378 * 356.68142 * 13 11 10 15 15 C 1.38223 * 120.09183 * 180.28231 * 14 13 11 16 16 C 1.38824 * 120.67578 * 359.69536 * 15 14 13 17 17 C 1.37601 * 120.57302 * 0.02562 * 16 15 14 18 18 C 1.40712 * 119.87956 * 0.02562 * 17 16 15 19 19 C 1.40891 * 120.32906 * 179.97438 * 18 17 16 20 20 H 1.07992 * 120.00234 * 145.79747 * 19 18 17 21 21 C 1.40273 * 119.99571 * 325.79352 * 19 18 17 22 22 N 1.30635 * 120.00253 * 340.74281 * 21 19 18 23 23 Si 1.86798 * 119.99912 * 160.74547 * 21 19 18 24 24 H 1.48507 * 109.47415 * 179.97438 * 23 21 19 25 25 H 1.48498 * 109.47275 * 299.99863 * 23 21 19 26 26 H 1.48501 * 109.47305 * 59.99898 * 23 21 19 27 27 H 1.09004 * 109.47129 * 299.99972 * 1 2 3 28 28 H 1.08998 * 109.47006 * 60.00078 * 1 2 3 29 29 H 1.09004 * 109.47441 * 179.97438 * 1 2 3 30 30 H 1.08992 * 109.47375 * 179.97438 * 3 2 1 31 31 H 1.08999 * 109.47064 * 300.00486 * 3 2 1 32 32 H 1.09004 * 109.46949 * 59.99918 * 3 2 1 33 33 H 1.08997 * 109.46758 * 299.99816 * 4 2 1 34 34 H 1.08998 * 109.47326 * 59.99941 * 4 2 1 35 35 H 1.09005 * 109.47058 * 179.97438 * 4 2 1 36 36 H 0.96994 * 120.00232 * 239.99956 * 5 2 1 37 37 H 1.08999 * 109.46847 * 59.99435 * 8 6 5 38 38 H 1.09005 * 109.46862 * 299.99720 * 8 6 5 39 39 H 1.09004 * 109.47250 * 59.99582 * 9 8 6 40 40 H 1.09005 * 109.47069 * 299.99758 * 9 8 6 41 41 H 0.96994 * 119.99831 * 359.97438 * 10 9 8 42 42 H 1.08001 * 119.94893 * 359.97438 * 14 13 11 43 43 H 1.07988 * 119.65914 * 179.72052 * 15 14 13 44 44 H 1.08002 * 119.71756 * 180.02562 * 16 15 14 45 45 H 1.07997 * 120.06577 * 180.02562 * 17 16 15 46 46 H 0.97003 * 120.00071 * 354.83739 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 2.0183 -0.6906 1.1962 6 6 1.6927 -1.9810 1.4094 7 8 0.9951 -2.5703 0.6112 8 6 2.1946 -2.6913 2.6402 9 6 1.6842 -4.1336 2.6404 10 7 2.1725 -4.8242 3.8365 11 6 1.8462 -6.1143 4.0502 12 8 1.1467 -6.7052 3.2498 13 6 2.3372 -6.8092 5.2542 14 6 3.1942 -6.1602 6.1390 15 6 3.6568 -6.8174 7.2636 16 6 3.2709 -8.1242 7.5291 17 6 2.4205 -8.7899 6.6764 18 6 1.9361 -8.1438 5.5240 19 6 1.0654 -8.8166 4.6441 20 1 0.2900 -8.2696 4.1285 21 6 1.2057 -10.1970 4.4378 22 7 2.3294 -10.7915 4.7385 23 14 -0.2142 -11.1851 3.7328 24 1 0.1859 -12.6102 3.6127 25 1 -1.3895 -11.0747 4.6337 26 1 -0.5676 -10.6559 2.3911 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 3.1299 1.4425 0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.6767 1.9563 0.8900 33 1 1.6767 -1.7489 -1.2492 34 1 1.6767 -0.2074 -2.1393 35 1 3.1300 -0.7208 -1.2495 36 1 2.5759 -0.2192 1.8347 37 1 1.8308 -2.1773 3.5299 38 1 3.2846 -2.6912 2.6406 39 1 2.0476 -4.6477 1.7506 40 1 0.5941 -4.1333 2.6402 41 1 2.7307 -4.3531 4.4746 42 1 3.5019 -5.1435 5.9437 43 1 4.3248 -6.3089 7.9428 44 1 3.6414 -8.6229 8.4126 45 1 2.1254 -9.8063 6.8911 46 1 3.0911 -10.2683 5.0336 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601035728.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:10 Heat of formation + Delta-G solvation = -95.188324 kcal Electronic energy + Delta-G solvation = -26073.016115 eV Core-core repulsion = 22346.542809 eV Total energy + Delta-G solvation = -3726.473307 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.27570 -40.71959 -38.83617 -37.65027 -36.20909 -35.61990 -33.43441 -32.27180 -31.38744 -30.61452 -28.24363 -28.22079 -27.21325 -25.50253 -23.76268 -22.72857 -21.89141 -21.22780 -20.56165 -19.93505 -18.33768 -17.98248 -16.97199 -16.88503 -16.67006 -16.46537 -15.98051 -15.72743 -15.60980 -15.40002 -15.11349 -14.82345 -14.55049 -14.46544 -14.28708 -13.94090 -13.69725 -13.32520 -13.06826 -13.02532 -12.92361 -12.84955 -12.72766 -12.61335 -12.49080 -12.34626 -12.10041 -12.03169 -11.98641 -11.93911 -11.46941 -10.96910 -10.67411 -10.35887 -10.10834 -10.01960 -9.60286 -9.48407 -9.10691 -6.46344 0.40837 0.91726 1.44749 1.60624 1.64349 1.75008 1.98498 2.25267 2.29827 2.60996 2.73995 3.56698 3.62227 3.81610 3.97752 4.05441 4.08841 4.15594 4.24793 4.29578 4.46389 4.49746 4.69669 4.70294 4.76016 4.80678 4.84252 4.85196 4.89240 4.95466 4.99627 5.00192 5.14797 5.22111 5.35780 5.38115 5.43876 5.54702 5.64205 5.65776 5.72038 5.90196 5.97292 6.21003 6.35095 6.62300 6.70141 6.86082 6.93363 7.31654 7.61387 8.04075 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.017345 B = 0.002678 C = 0.002379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.885433 B =10454.209244 C =11766.175962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.163 3.837 3 C -0.146 4.146 4 C -0.164 4.164 5 N -0.710 5.710 6 C 0.515 3.485 7 O -0.576 6.576 8 C -0.137 4.137 9 C 0.144 3.856 10 N -0.724 5.724 11 C 0.554 3.446 12 O -0.583 6.583 13 C -0.282 4.282 14 C -0.039 4.039 15 C -0.242 4.242 16 C -0.072 4.072 17 C -0.226 4.226 18 C 0.094 3.906 19 C -0.513 4.513 20 H 0.077 0.923 21 C -0.003 4.003 22 N -0.817 5.817 23 Si 1.114 2.886 24 H -0.262 1.262 25 H -0.258 1.258 26 H -0.275 1.275 27 H 0.061 0.939 28 H 0.074 0.926 29 H 0.043 0.957 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.073 0.927 33 H 0.043 0.957 34 H 0.074 0.926 35 H 0.060 0.940 36 H 0.417 0.583 37 H 0.132 0.868 38 H 0.131 0.869 39 H 0.039 0.961 40 H 0.041 0.959 41 H 0.411 0.589 42 H 0.142 0.858 43 H 0.140 0.860 44 H 0.125 0.875 45 H 0.088 0.912 46 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.078 24.883 -3.188 25.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.078 3.922 3 C -0.204 4.204 4 C -0.222 4.222 5 N -0.363 5.363 6 C 0.302 3.698 7 O -0.455 6.455 8 C -0.177 4.177 9 C 0.020 3.980 10 N -0.379 5.379 11 C 0.347 3.653 12 O -0.464 6.464 13 C -0.287 4.287 14 C -0.058 4.058 15 C -0.261 4.261 16 C -0.091 4.091 17 C -0.245 4.245 18 C 0.090 3.910 19 C -0.541 4.541 20 H 0.095 0.905 21 C -0.218 4.218 22 N -0.441 5.441 23 Si 0.931 3.069 24 H -0.186 1.186 25 H -0.183 1.183 26 H -0.201 1.201 27 H 0.080 0.920 28 H 0.093 0.907 29 H 0.062 0.938 30 H 0.092 0.908 31 H 0.100 0.900 32 H 0.092 0.908 33 H 0.062 0.938 34 H 0.093 0.907 35 H 0.079 0.921 36 H 0.255 0.745 37 H 0.150 0.850 38 H 0.149 0.851 39 H 0.057 0.943 40 H 0.060 0.940 41 H 0.249 0.751 42 H 0.160 0.840 43 H 0.158 0.842 44 H 0.143 0.857 45 H 0.106 0.894 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 2.672 22.538 -4.734 23.184 hybrid contribution 0.806 1.371 0.734 1.752 sum 3.478 23.909 -4.000 24.489 Atomic orbital electron populations 1.22205 0.95214 1.02103 1.02631 1.20449 0.93810 0.93356 0.84611 1.22031 1.02232 0.92029 1.04074 1.22209 1.01213 1.01127 0.97634 1.46048 1.53601 1.11051 1.25645 1.20704 0.79496 0.82441 0.87167 1.90709 1.39328 1.67203 1.48285 1.21751 1.04811 0.93209 0.97936 1.20726 0.98187 0.92030 0.87078 1.45631 1.55219 1.11237 1.25790 1.18533 0.79361 0.81620 0.85767 1.90683 1.40205 1.66729 1.48805 1.19781 1.10938 0.98514 0.99490 1.21190 0.93136 0.98708 0.92726 1.20844 1.08442 0.95638 1.01160 1.21182 0.94950 0.95278 0.97661 1.21196 1.06199 1.00309 0.96826 1.17924 0.89405 0.91995 0.91724 1.21085 1.14545 0.95827 1.22604 0.90497 1.28426 1.02863 0.96880 0.93663 1.70500 1.02345 1.41313 1.29963 0.83048 0.71975 0.74958 0.76889 1.18601 1.18264 1.20077 0.92008 0.90713 0.93794 0.90793 0.90025 0.90757 0.93810 0.90703 0.92062 0.74520 0.85019 0.85122 0.94271 0.94042 0.75113 0.83997 0.84202 0.85716 0.89392 0.90489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.85 8.40 71.98 0.60 -2.24 16 2 C 0.16 2.32 1.06 3.60 0.00 2.32 16 3 C -0.15 -1.01 8.59 71.98 0.62 -0.39 16 4 C -0.16 -2.88 8.40 71.98 0.60 -2.27 16 5 N -0.71 -9.71 5.11 -422.90 -2.16 -11.87 16 6 C 0.52 11.18 7.25 87.66 0.64 11.81 16 7 O -0.58 -18.59 12.19 -3.05 -0.04 -18.63 16 8 C -0.14 -2.43 5.81 29.85 0.17 -2.26 16 9 C 0.14 4.57 4.96 86.38 0.43 5.00 16 10 N -0.72 -24.42 5.51 -466.37 -2.57 -26.99 16 11 C 0.55 26.59 7.73 86.67 0.67 27.26 16 12 O -0.58 -33.93 13.56 -4.06 -0.06 -33.99 16 13 C -0.28 -13.73 5.92 -19.70 -0.12 -13.85 16 14 C -0.04 -1.47 9.53 22.51 0.21 -1.26 16 15 C -0.24 -8.84 10.03 22.41 0.22 -8.62 16 16 C -0.07 -3.01 10.01 22.26 0.22 -2.78 16 17 C -0.23 -11.53 7.87 22.72 0.18 -11.35 16 18 C 0.09 5.21 5.17 -21.11 -0.11 5.10 16 19 C -0.51 -30.64 7.65 23.41 0.18 -30.46 16 20 H 0.08 4.91 5.92 -2.91 -0.02 4.90 16 21 C 0.00 -0.17 5.04 85.37 0.43 0.26 16 22 N -0.82 -46.80 12.57 21.88 0.28 -46.53 16 23 Si 1.11 49.15 29.98 68.60 2.06 51.21 16 24 H -0.26 -10.86 7.11 99.48 0.71 -10.16 16 25 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 26 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 27 H 0.06 0.95 8.14 -2.38 -0.02 0.93 16 28 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.04 1.11 6.17 -2.39 -0.01 1.10 16 30 H 0.07 0.38 8.14 -2.39 -0.02 0.36 16 31 H 0.08 0.47 8.14 -2.39 -0.02 0.46 16 32 H 0.07 0.37 8.14 -2.38 -0.02 0.35 16 33 H 0.04 1.12 6.17 -2.39 -0.01 1.10 16 34 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16 36 H 0.42 2.58 8.47 -92.71 -0.79 1.80 16 37 H 0.13 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.13 1.53 8.14 -2.38 -0.02 1.51 16 39 H 0.04 1.48 8.10 -2.38 -0.02 1.46 16 40 H 0.04 1.54 8.10 -2.38 -0.02 1.52 16 41 H 0.41 10.10 6.51 -92.71 -0.60 9.50 16 42 H 0.14 3.83 6.41 -2.91 -0.02 3.81 16 43 H 0.14 3.92 8.06 -2.92 -0.02 3.89 16 44 H 0.12 4.36 8.06 -2.91 -0.02 4.33 16 45 H 0.09 4.72 6.94 -2.91 -0.02 4.70 16 46 H 0.28 16.60 6.55 -92.71 -0.61 15.99 16 Total: -1.00 -81.95 372.40 2.25 -79.69 By element: Atomic # 1 Polarization: 31.04 SS G_CDS: -0.22 Total: 30.82 kcal Atomic # 6 Polarization: -28.69 SS G_CDS: 4.96 Total: -23.73 kcal Atomic # 7 Polarization: -80.93 SS G_CDS: -4.45 Total: -85.38 kcal Atomic # 8 Polarization: -52.52 SS G_CDS: -0.09 Total: -52.61 kcal Atomic # 14 Polarization: 49.15 SS G_CDS: 2.06 Total: 51.21 kcal Total: -81.95 2.25 -79.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601035728.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.493 kcal (2) G-P(sol) polarization free energy of solvation -81.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds