Wall clock time and date at job start Tue Mar 31 2020 13:15:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46607 * 2 1 4 4 C 1.50696 * 109.47102 * 120.00183 * 2 1 3 5 5 O 1.21282 * 119.99792 * 0.02562 * 4 2 1 6 6 N 1.34775 * 120.00091 * 180.02562 * 4 2 1 7 7 C 1.46500 * 120.00356 * 180.02562 * 6 4 2 8 8 C 1.52999 * 109.47299 * 179.97438 * 7 6 4 9 9 C 1.52995 * 109.47191 * 180.02562 * 8 7 6 10 10 N 1.46494 * 109.47394 * 179.97438 * 9 8 7 11 11 C 1.34776 * 120.00009 * 179.97438 * 10 9 8 12 12 O 1.21609 * 120.00181 * 0.02562 * 11 10 9 13 13 C 1.47435 * 119.99851 * 180.02562 * 11 10 9 14 14 C 1.39235 * 120.28378 * 356.68142 * 13 11 10 15 15 C 1.38223 * 120.09183 * 180.28231 * 14 13 11 16 16 C 1.38824 * 120.67578 * 359.69536 * 15 14 13 17 17 C 1.37601 * 120.57302 * 0.02562 * 16 15 14 18 18 C 1.40712 * 119.87956 * 0.02562 * 17 16 15 19 19 C 1.40891 * 120.32906 * 179.97438 * 18 17 16 20 20 H 1.07992 * 120.00234 * 145.79747 * 19 18 17 21 21 C 1.40273 * 119.99571 * 325.79352 * 19 18 17 22 22 N 1.30635 * 120.00253 * 340.74281 * 21 19 18 23 23 Si 1.86798 * 119.99912 * 160.74547 * 21 19 18 24 24 H 1.48507 * 109.47415 * 179.97438 * 23 21 19 25 25 H 1.48498 * 109.47275 * 299.99863 * 23 21 19 26 26 H 1.48501 * 109.47305 * 59.99898 * 23 21 19 27 27 H 1.08992 * 109.47471 * 299.99617 * 1 2 3 28 28 H 1.09007 * 109.47280 * 60.00046 * 1 2 3 29 29 H 1.09001 * 109.46986 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47293 * 240.00448 * 2 1 3 31 31 H 1.09008 * 109.46852 * 179.97438 * 3 2 1 32 32 H 1.08994 * 109.47579 * 299.99751 * 3 2 1 33 33 H 1.09003 * 109.47232 * 60.00661 * 3 2 1 34 34 H 0.97007 * 119.99816 * 359.97438 * 6 4 2 35 35 H 1.09004 * 109.47179 * 59.99644 * 7 6 4 36 36 H 1.08999 * 109.46625 * 299.99786 * 7 6 4 37 37 H 1.08999 * 109.46806 * 59.99711 * 8 7 6 38 38 H 1.09005 * 109.47011 * 299.99930 * 8 7 6 39 39 H 1.09004 * 109.47250 * 59.99698 * 9 8 7 40 40 H 1.09005 * 109.47069 * 299.99874 * 9 8 7 41 41 H 0.96994 * 119.99831 * 359.97438 * 10 9 8 42 42 H 1.08001 * 119.94893 * 359.97438 * 14 13 11 43 43 H 1.07988 * 119.65914 * 179.72052 * 15 14 13 44 44 H 1.08002 * 119.71756 * 180.02562 * 16 15 14 45 45 H 1.07997 * 120.06577 * 180.02562 * 17 16 15 46 46 H 0.97003 * 120.00071 * 354.83739 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 1.2442 -1.1718 2.0285 6 7 3.3574 -0.8331 1.4440 7 6 3.8458 -1.5243 2.6398 8 6 5.3758 -1.5241 2.6399 9 6 5.8858 -2.2465 3.8884 10 7 7.3507 -2.2469 3.8882 11 6 8.0246 -2.8310 4.8987 12 8 7.4165 -3.3582 5.8105 13 6 9.4989 -2.8310 4.8987 14 6 10.2011 -2.2905 3.8247 15 6 11.5833 -2.2978 3.8262 16 6 12.2875 -2.8352 4.8951 17 6 11.6217 -3.3714 5.9733 18 6 10.2147 -3.3773 5.9960 19 6 9.5233 -3.9244 7.0950 20 1 8.5862 -3.4920 7.4129 21 6 10.0521 -5.0308 7.7760 22 7 10.9522 -5.7828 7.2008 23 14 9.4693 -5.4289 9.5055 24 1 10.1761 -6.6377 10.0002 25 1 9.7615 -4.2822 10.4026 26 1 8.0064 -5.6838 9.4885 27 1 -0.3634 0.5137 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8901 31 1 3.1300 1.4426 0.0005 32 1 1.6766 1.9564 -0.8899 33 1 1.6766 1.9564 0.8901 34 1 3.9878 -0.4644 0.8054 35 1 3.4828 -2.5521 2.6391 36 1 3.4820 -1.0111 3.5300 37 1 5.7390 -0.4964 2.6403 38 1 5.7392 -2.0376 1.7496 39 1 5.5225 -3.2742 3.8875 40 1 5.5224 -1.7334 4.7789 41 1 7.8357 -1.8268 3.1608 42 1 9.6649 -1.8695 2.9871 43 1 12.1208 -1.8808 2.9876 44 1 13.3675 -2.8324 4.8803 45 1 12.1778 -3.7869 6.8006 46 1 11.2003 -5.6218 6.2770 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601374731.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:15:39 Heat of formation + Delta-G solvation = -82.177324 kcal Electronic energy + Delta-G solvation = -25409.916075 eV Core-core repulsion = 21684.006968 eV Total energy + Delta-G solvation = -3725.909107 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.17456 -39.07308 -37.18805 -36.08926 -34.83932 -34.32093 -33.77894 -31.32081 -29.85744 -29.30446 -27.53843 -26.13724 -25.05669 -23.37894 -22.23965 -21.84137 -20.89848 -20.11249 -19.46100 -18.09846 -17.44302 -16.50929 -16.27272 -16.17951 -15.43863 -15.17174 -14.75216 -14.40590 -14.28172 -14.12061 -13.83359 -13.77428 -13.54746 -13.18146 -12.73447 -12.67464 -12.47318 -12.38324 -12.23823 -12.08872 -11.83004 -11.67753 -11.57473 -11.47714 -11.20541 -11.11655 -10.91196 -10.76847 -10.36898 -10.18776 -10.01394 -9.63589 -9.35158 -9.09063 -8.55039 -8.44851 -7.81804 -7.63045 -7.16561 -4.48287 2.21479 2.37829 2.71604 2.84366 3.20381 3.30536 3.40856 3.84919 4.02762 4.05024 4.27522 4.45156 4.53615 4.61911 4.76844 4.79437 4.89229 4.99755 5.18029 5.27855 5.38377 5.42382 5.43148 5.50688 5.52002 5.68732 5.71521 5.82150 5.87465 5.89512 6.01914 6.08143 6.14140 6.18151 6.48040 6.69020 6.96229 7.04578 7.18820 7.25341 7.46442 7.58316 7.69503 7.86541 7.94966 8.06521 8.18956 8.33011 8.70841 8.83834 9.32343 10.02414 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.018734 B = 0.002251 C = 0.002039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1494.258453 B =12437.669860 C =13731.753181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.116 4.116 3 C -0.145 4.145 4 C 0.513 3.487 5 O -0.538 6.538 6 N -0.730 5.730 7 C 0.121 3.879 8 C -0.142 4.142 9 C 0.129 3.871 10 N -0.750 5.750 11 C 0.563 3.437 12 O -0.536 6.536 13 C -0.267 4.267 14 C -0.043 4.043 15 C -0.260 4.260 16 C -0.076 4.076 17 C -0.200 4.200 18 C 0.120 3.880 19 C -0.465 4.465 20 H 0.105 0.895 21 C 0.031 3.969 22 N -0.792 5.792 23 Si 1.070 2.930 24 H -0.274 1.274 25 H -0.274 1.274 26 H -0.272 1.272 27 H 0.062 0.938 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.097 0.903 31 H 0.060 0.940 32 H 0.068 0.932 33 H 0.061 0.939 34 H 0.400 0.600 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.074 0.926 39 H 0.063 0.937 40 H 0.064 0.936 41 H 0.391 0.609 42 H 0.090 0.910 43 H 0.093 0.907 44 H 0.093 0.907 45 H 0.107 0.893 46 H 0.298 0.702 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.557 11.030 -14.245 21.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.137 4.137 3 C -0.202 4.202 4 C 0.300 3.700 5 O -0.415 6.415 6 N -0.383 5.383 7 C -0.003 4.003 8 C -0.180 4.180 9 C 0.004 3.996 10 N -0.405 5.405 11 C 0.357 3.643 12 O -0.414 6.414 13 C -0.271 4.271 14 C -0.062 4.062 15 C -0.280 4.280 16 C -0.095 4.095 17 C -0.219 4.219 18 C 0.115 3.885 19 C -0.492 4.492 20 H 0.123 0.877 21 C -0.191 4.191 22 N -0.415 5.415 23 Si 0.893 3.107 24 H -0.199 1.199 25 H -0.199 1.199 26 H -0.198 1.198 27 H 0.081 0.919 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.115 0.885 31 H 0.079 0.921 32 H 0.087 0.913 33 H 0.080 0.920 34 H 0.234 0.766 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.093 0.907 38 H 0.093 0.907 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.225 0.775 42 H 0.108 0.892 43 H 0.111 0.889 44 H 0.111 0.889 45 H 0.125 0.875 46 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -12.315 9.210 -11.713 19.331 hybrid contribution 0.539 1.458 -2.257 2.740 sum -11.777 10.668 -13.970 21.158 Atomic orbital electron populations 1.21617 0.92422 1.02920 1.02140 1.21321 0.98513 0.97298 0.96569 1.21800 1.01188 0.94176 1.03071 1.20735 0.82074 0.79515 0.87715 1.90720 1.55298 1.48350 1.47098 1.46042 1.07241 1.59168 1.25807 1.21263 0.93258 0.97983 0.87811 1.21974 0.94497 1.01992 0.99515 1.20957 0.81702 1.00420 0.96534 1.45973 1.05600 1.61971 1.26988 1.18380 0.88027 0.77236 0.80665 1.90687 1.70217 1.44920 1.35582 1.19384 0.90552 1.18986 0.98224 1.20704 0.94163 0.95943 0.95412 1.20236 0.93607 1.13343 1.00788 1.20744 0.97646 0.96974 0.94108 1.21257 0.94382 1.07156 0.99139 1.17508 0.91107 0.89583 0.90276 1.21183 1.08097 1.11376 1.08516 0.87688 1.27286 0.92548 0.93178 1.06102 1.70394 1.21708 1.33690 1.15740 0.83559 0.77212 0.77224 0.72672 1.19923 1.19927 1.19751 0.91879 0.92025 0.91917 0.88507 0.92126 0.91306 0.91960 0.76563 0.90983 0.90982 0.90695 0.90702 0.91822 0.91818 0.77483 0.89165 0.88912 0.88870 0.87522 0.88816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.95 8.48 37.16 0.32 -0.63 16 2 C -0.12 -0.76 3.26 -91.77 -0.30 -1.06 16 3 C -0.14 -0.71 9.09 37.16 0.34 -0.37 16 4 C 0.51 5.16 7.15 -10.99 -0.08 5.08 16 5 O -0.54 -7.82 15.98 5.56 0.09 -7.73 16 6 N -0.73 -5.98 5.45 -60.29 -0.33 -6.31 16 7 C 0.12 1.18 5.67 -4.04 -0.02 1.16 16 8 C -0.14 -1.30 5.44 -26.73 -0.15 -1.45 16 9 C 0.13 1.80 5.67 -4.05 -0.02 1.78 16 10 N -0.75 -12.60 5.51 -61.38 -0.34 -12.94 16 11 C 0.56 12.84 7.73 -12.52 -0.10 12.75 16 12 O -0.54 -14.12 13.56 5.27 0.07 -14.05 16 13 C -0.27 -6.39 5.92 -104.36 -0.62 -7.01 16 14 C -0.04 -0.89 9.53 -39.22 -0.37 -1.26 16 15 C -0.26 -5.34 10.03 -39.37 -0.39 -5.74 16 16 C -0.08 -1.66 10.01 -39.60 -0.40 -2.05 16 17 C -0.20 -4.95 7.87 -38.88 -0.31 -5.25 16 18 C 0.12 3.17 5.17 -106.54 -0.55 2.62 16 19 C -0.46 -12.76 7.65 -37.81 -0.29 -13.05 16 20 H 0.11 3.01 5.92 -52.49 -0.31 2.70 16 21 C 0.03 0.80 5.04 -17.30 -0.09 0.71 16 22 N -0.79 -21.19 12.57 55.56 0.70 -20.49 16 23 Si 1.07 22.59 29.98 -169.99 -5.10 17.49 16 24 H -0.27 -5.65 7.11 56.52 0.40 -5.24 16 25 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 26 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 27 H 0.06 0.52 8.10 -51.93 -0.42 0.10 16 28 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.51 8.10 -51.93 -0.42 0.09 16 30 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.23 7.56 -51.92 -0.39 -0.16 16 32 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 33 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 34 H 0.40 2.12 7.89 -40.82 -0.32 1.80 16 35 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.39 5.49 6.51 -40.82 -0.27 5.23 16 42 H 0.09 1.49 6.41 -52.49 -0.34 1.16 16 43 H 0.09 1.64 8.06 -52.49 -0.42 1.21 16 44 H 0.09 1.77 8.06 -52.49 -0.42 1.35 16 45 H 0.11 2.69 6.94 -52.49 -0.36 2.33 16 46 H 0.30 8.15 6.55 -40.82 -0.27 7.88 16 LS Contribution 379.62 15.07 5.72 5.72 Total: -1.00 -32.95 379.62 -9.18 -42.13 By element: Atomic # 1 Polarization: 16.93 SS G_CDS: -6.97 Total: 9.96 kcal Atomic # 6 Polarization: -10.76 SS G_CDS: -3.03 Total: -13.79 kcal Atomic # 7 Polarization: -39.77 SS G_CDS: 0.03 Total: -39.74 kcal Atomic # 8 Polarization: -21.94 SS G_CDS: 0.16 Total: -21.78 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -5.10 Total: 17.49 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -32.95 -9.18 -42.13 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601374731.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.047 kcal (2) G-P(sol) polarization free energy of solvation -32.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds