Wall clock time and date at job start Tue Mar 31 2020 13:15:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46607 * 2 1 4 4 C 1.50696 * 109.47102 * 120.00183 * 2 1 3 5 5 O 1.21282 * 119.99792 * 0.02562 * 4 2 1 6 6 N 1.34775 * 120.00091 * 180.02562 * 4 2 1 7 7 C 1.46500 * 120.00356 * 180.02562 * 6 4 2 8 8 C 1.52999 * 109.47299 * 179.97438 * 7 6 4 9 9 C 1.52995 * 109.47191 * 180.02562 * 8 7 6 10 10 N 1.46494 * 109.47394 * 179.97438 * 9 8 7 11 11 C 1.34776 * 120.00009 * 179.97438 * 10 9 8 12 12 O 1.21609 * 120.00181 * 0.02562 * 11 10 9 13 13 C 1.47435 * 119.99851 * 180.02562 * 11 10 9 14 14 C 1.39235 * 120.28378 * 356.68142 * 13 11 10 15 15 C 1.38223 * 120.09183 * 180.28231 * 14 13 11 16 16 C 1.38824 * 120.67578 * 359.69536 * 15 14 13 17 17 C 1.37601 * 120.57302 * 0.02562 * 16 15 14 18 18 C 1.40712 * 119.87956 * 0.02562 * 17 16 15 19 19 C 1.40891 * 120.32906 * 179.97438 * 18 17 16 20 20 H 1.07992 * 120.00234 * 145.79747 * 19 18 17 21 21 C 1.40273 * 119.99571 * 325.79352 * 19 18 17 22 22 N 1.30635 * 120.00253 * 340.74281 * 21 19 18 23 23 Si 1.86798 * 119.99912 * 160.74547 * 21 19 18 24 24 H 1.48507 * 109.47415 * 179.97438 * 23 21 19 25 25 H 1.48498 * 109.47275 * 299.99863 * 23 21 19 26 26 H 1.48501 * 109.47305 * 59.99898 * 23 21 19 27 27 H 1.08992 * 109.47471 * 299.99617 * 1 2 3 28 28 H 1.09007 * 109.47280 * 60.00046 * 1 2 3 29 29 H 1.09001 * 109.46986 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47293 * 240.00448 * 2 1 3 31 31 H 1.09008 * 109.46852 * 179.97438 * 3 2 1 32 32 H 1.08994 * 109.47579 * 299.99751 * 3 2 1 33 33 H 1.09003 * 109.47232 * 60.00661 * 3 2 1 34 34 H 0.97007 * 119.99816 * 359.97438 * 6 4 2 35 35 H 1.09004 * 109.47179 * 59.99644 * 7 6 4 36 36 H 1.08999 * 109.46625 * 299.99786 * 7 6 4 37 37 H 1.08999 * 109.46806 * 59.99711 * 8 7 6 38 38 H 1.09005 * 109.47011 * 299.99930 * 8 7 6 39 39 H 1.09004 * 109.47250 * 59.99698 * 9 8 7 40 40 H 1.09005 * 109.47069 * 299.99874 * 9 8 7 41 41 H 0.96994 * 119.99831 * 359.97438 * 10 9 8 42 42 H 1.08001 * 119.94893 * 359.97438 * 14 13 11 43 43 H 1.07988 * 119.65914 * 179.72052 * 15 14 13 44 44 H 1.08002 * 119.71756 * 180.02562 * 16 15 14 45 45 H 1.07997 * 120.06577 * 180.02562 * 17 16 15 46 46 H 0.97003 * 120.00071 * 354.83739 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 1.2442 -1.1718 2.0285 6 7 3.3574 -0.8331 1.4440 7 6 3.8458 -1.5243 2.6398 8 6 5.3758 -1.5241 2.6399 9 6 5.8858 -2.2465 3.8884 10 7 7.3507 -2.2469 3.8882 11 6 8.0246 -2.8310 4.8987 12 8 7.4165 -3.3582 5.8105 13 6 9.4989 -2.8310 4.8987 14 6 10.2011 -2.2905 3.8247 15 6 11.5833 -2.2978 3.8262 16 6 12.2875 -2.8352 4.8951 17 6 11.6217 -3.3714 5.9733 18 6 10.2147 -3.3773 5.9960 19 6 9.5233 -3.9244 7.0950 20 1 8.5862 -3.4920 7.4129 21 6 10.0521 -5.0308 7.7760 22 7 10.9522 -5.7828 7.2008 23 14 9.4693 -5.4289 9.5055 24 1 10.1761 -6.6377 10.0002 25 1 9.7615 -4.2822 10.4026 26 1 8.0064 -5.6838 9.4885 27 1 -0.3634 0.5137 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8901 31 1 3.1300 1.4426 0.0005 32 1 1.6766 1.9564 -0.8899 33 1 1.6766 1.9564 0.8901 34 1 3.9878 -0.4644 0.8054 35 1 3.4828 -2.5521 2.6391 36 1 3.4820 -1.0111 3.5300 37 1 5.7390 -0.4964 2.6403 38 1 5.7392 -2.0376 1.7496 39 1 5.5225 -3.2742 3.8875 40 1 5.5224 -1.7334 4.7789 41 1 7.8357 -1.8268 3.1608 42 1 9.6649 -1.8695 2.9871 43 1 12.1208 -1.8808 2.9876 44 1 13.3675 -2.8324 4.8803 45 1 12.1778 -3.7869 6.8006 46 1 11.2003 -5.6218 6.2770 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601374731.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:15:38 Heat of formation + Delta-G solvation = -104.691352 kcal Electronic energy + Delta-G solvation = -25410.892356 eV Core-core repulsion = 21684.006968 eV Total energy + Delta-G solvation = -3726.885389 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.99827 -40.77090 -38.87527 -37.20848 -35.95013 -35.49730 -35.24194 -32.63256 -31.54031 -30.98650 -28.05333 -27.46632 -26.60989 -24.43318 -23.58698 -22.92841 -22.60631 -21.20427 -20.79227 -19.92376 -18.27247 -17.91240 -17.38269 -17.07240 -16.62011 -16.45446 -16.31609 -15.87659 -15.65329 -15.52045 -15.33567 -14.91104 -14.67508 -14.37742 -13.96403 -13.93456 -13.70304 -13.48147 -13.21786 -13.15737 -12.92212 -12.83252 -12.70791 -12.63813 -12.48664 -12.10826 -12.05106 -12.02520 -11.97841 -11.94230 -11.46432 -10.96792 -10.82137 -10.37241 -10.15671 -10.01828 -9.60318 -9.48855 -9.10498 -6.46373 0.40547 0.91277 1.45551 1.61020 1.61499 1.75470 2.05022 2.25294 2.30106 2.51958 2.74074 3.56472 3.66625 3.89509 3.93001 3.95731 4.03114 4.07130 4.24756 4.29969 4.45959 4.47523 4.49297 4.54747 4.71569 4.76430 4.82833 4.88763 4.89953 4.93432 5.05749 5.06874 5.11108 5.15033 5.29519 5.33047 5.41336 5.43492 5.57486 5.65744 5.71666 5.90094 5.97110 6.20591 6.34442 6.53122 6.69333 6.86073 6.92946 7.24280 7.61183 8.04099 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.018734 B = 0.002251 C = 0.002039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1494.258453 B =12437.669860 C =13731.753181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.109 4.109 3 C -0.142 4.142 4 C 0.506 3.494 5 O -0.592 6.592 6 N -0.715 5.715 7 C 0.124 3.876 8 C -0.119 4.119 9 C 0.125 3.875 10 N -0.725 5.725 11 C 0.555 3.445 12 O -0.582 6.582 13 C -0.284 4.284 14 C -0.040 4.040 15 C -0.243 4.243 16 C -0.073 4.073 17 C -0.226 4.226 18 C 0.094 3.906 19 C -0.511 4.511 20 H 0.079 0.921 21 C -0.004 4.004 22 N -0.817 5.817 23 Si 1.114 2.886 24 H -0.264 1.264 25 H -0.259 1.259 26 H -0.273 1.273 27 H 0.043 0.957 28 H 0.086 0.914 29 H 0.045 0.955 30 H 0.123 0.877 31 H 0.076 0.924 32 H 0.087 0.913 33 H 0.047 0.953 34 H 0.418 0.582 35 H 0.056 0.944 36 H 0.057 0.943 37 H 0.098 0.902 38 H 0.097 0.903 39 H 0.048 0.952 40 H 0.050 0.950 41 H 0.409 0.591 42 H 0.141 0.859 43 H 0.139 0.861 44 H 0.124 0.876 45 H 0.088 0.912 46 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.724 13.428 -17.971 24.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.130 4.130 3 C -0.199 4.199 4 C 0.294 3.706 5 O -0.473 6.473 6 N -0.368 5.368 7 C -0.001 4.001 8 C -0.157 4.157 9 C 0.001 3.999 10 N -0.380 5.380 11 C 0.348 3.652 12 O -0.463 6.463 13 C -0.289 4.289 14 C -0.058 4.058 15 C -0.262 4.262 16 C -0.091 4.091 17 C -0.246 4.246 18 C 0.090 3.910 19 C -0.539 4.539 20 H 0.097 0.903 21 C -0.219 4.219 22 N -0.441 5.441 23 Si 0.932 3.068 24 H -0.188 1.188 25 H -0.183 1.183 26 H -0.198 1.198 27 H 0.063 0.937 28 H 0.105 0.895 29 H 0.064 0.936 30 H 0.141 0.859 31 H 0.095 0.905 32 H 0.106 0.894 33 H 0.066 0.934 34 H 0.256 0.744 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.117 0.883 38 H 0.116 0.884 39 H 0.066 0.934 40 H 0.068 0.932 41 H 0.247 0.753 42 H 0.158 0.842 43 H 0.156 0.844 44 H 0.142 0.858 45 H 0.106 0.894 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -11.444 11.668 -15.525 22.542 hybrid contribution 0.282 0.894 -1.375 1.664 sum -11.162 12.562 -16.900 23.833 Atomic orbital electron populations 1.21636 0.93179 1.01959 1.02463 1.21376 0.97882 0.98295 0.95454 1.21813 1.02174 0.92634 1.03298 1.21487 0.82068 0.78831 0.88205 1.90701 1.56686 1.50711 1.49153 1.45881 1.07198 1.58313 1.25405 1.21078 0.93705 0.97177 0.88142 1.21777 0.93530 1.02846 0.97528 1.21091 0.79814 1.00248 0.98766 1.45664 1.06758 1.59961 1.25587 1.18467 0.88063 0.77299 0.81325 1.90672 1.70947 1.47036 1.37685 1.19814 0.91680 1.18671 0.98733 1.21179 0.94671 0.94544 0.95421 1.20835 0.93812 1.10635 1.00953 1.21173 0.99465 0.95195 0.93276 1.21203 0.93915 1.09149 1.00310 1.17920 0.92260 0.89843 0.90976 1.21085 1.08118 1.13446 1.11278 0.90268 1.28446 0.92118 0.92519 1.08850 1.70502 1.23989 1.34611 1.15012 0.83035 0.76663 0.77851 0.69253 1.18804 1.18326 1.19842 0.93730 0.89474 0.93564 0.85884 0.90542 0.89427 0.93421 0.74382 0.92562 0.92494 0.88325 0.88444 0.93381 0.93151 0.75319 0.84181 0.84357 0.85811 0.89417 0.90515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.78 8.48 71.98 0.61 -1.16 16 2 C -0.11 -1.18 3.26 -11.54 -0.04 -1.22 16 3 C -0.14 -0.95 9.09 71.98 0.65 -0.29 16 4 C 0.51 9.61 7.15 87.66 0.63 10.24 16 5 O -0.59 -17.61 15.98 -3.03 -0.05 -17.65 16 6 N -0.72 -10.05 5.45 -463.06 -2.52 -12.58 16 7 C 0.12 2.27 5.67 86.38 0.49 2.76 16 8 C -0.12 -1.82 5.44 30.59 0.17 -1.66 16 9 C 0.13 3.37 5.67 86.38 0.49 3.86 16 10 N -0.72 -22.92 5.51 -466.37 -2.57 -25.49 16 11 C 0.56 25.46 7.73 86.67 0.67 26.13 16 12 O -0.58 -32.13 13.56 -4.06 -0.06 -32.18 16 13 C -0.28 -13.50 5.92 -19.70 -0.12 -13.61 16 14 C -0.04 -1.47 9.53 22.51 0.21 -1.26 16 15 C -0.24 -8.83 10.03 22.41 0.22 -8.61 16 16 C -0.07 -2.99 10.01 22.26 0.22 -2.77 16 17 C -0.23 -11.40 7.87 22.72 0.18 -11.22 16 18 C 0.09 5.14 5.17 -21.11 -0.11 5.03 16 19 C -0.51 -29.83 7.65 23.41 0.18 -29.65 16 20 H 0.08 4.91 5.92 -2.91 -0.02 4.89 16 21 C 0.00 -0.22 5.04 85.37 0.43 0.21 16 22 N -0.82 -46.06 12.57 21.88 0.28 -45.79 16 23 Si 1.11 47.92 29.98 68.60 2.06 49.98 16 24 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 25 H -0.26 -10.33 7.11 99.48 0.71 -9.63 16 26 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 27 H 0.04 0.74 8.10 -2.39 -0.02 0.72 16 28 H 0.09 0.68 8.14 -2.38 -0.02 0.66 16 29 H 0.05 0.75 8.10 -2.39 -0.02 0.73 16 30 H 0.12 0.73 8.14 -2.38 -0.02 0.71 16 31 H 0.08 0.28 7.56 -2.38 -0.02 0.26 16 32 H 0.09 0.30 8.14 -2.39 -0.02 0.28 16 33 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 34 H 0.42 2.75 7.89 -92.70 -0.73 2.02 16 35 H 0.06 1.23 8.14 -2.38 -0.02 1.21 16 36 H 0.06 1.23 8.14 -2.39 -0.02 1.22 16 37 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.10 1.15 8.14 -2.38 -0.02 1.13 16 39 H 0.05 1.47 8.14 -2.38 -0.02 1.45 16 40 H 0.05 1.51 8.14 -2.38 -0.02 1.49 16 41 H 0.41 9.72 6.51 -92.71 -0.60 9.12 16 42 H 0.14 3.75 6.41 -2.91 -0.02 3.73 16 43 H 0.14 3.87 8.06 -2.92 -0.02 3.85 16 44 H 0.12 4.30 8.06 -2.91 -0.02 4.27 16 45 H 0.09 4.65 6.94 -2.91 -0.02 4.63 16 46 H 0.28 16.36 6.55 -92.71 -0.61 15.75 16 Total: -1.00 -79.65 379.62 1.86 -77.79 By element: Atomic # 1 Polarization: 29.31 SS G_CDS: -0.18 Total: 29.14 kcal Atomic # 6 Polarization: -28.12 SS G_CDS: 4.90 Total: -23.22 kcal Atomic # 7 Polarization: -79.04 SS G_CDS: -4.82 Total: -83.85 kcal Atomic # 8 Polarization: -49.73 SS G_CDS: -0.10 Total: -49.84 kcal Atomic # 14 Polarization: 47.92 SS G_CDS: 2.06 Total: 49.98 kcal Total: -79.65 1.86 -77.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601374731.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.897 kcal (2) G-P(sol) polarization free energy of solvation -79.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds