Wall clock time and date at job start Tue Mar 31 2020 12:09:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.46866 * 2 1 4 4 C 1.53001 * 109.47259 * 239.99913 * 2 1 3 5 5 C 1.50695 * 109.46813 * 119.99967 * 2 1 3 6 6 O 1.20761 * 120.00432 * 0.02562 * 5 2 1 7 7 C 1.50700 * 119.99939 * 180.02562 * 5 2 1 8 8 C 1.53001 * 109.47452 * 179.97438 * 7 5 2 9 9 C 1.53001 * 109.47346 * 179.97438 * 8 7 5 10 10 C 1.50692 * 109.47054 * 180.02562 * 9 8 7 11 11 O 1.21276 * 120.00154 * 0.02562 * 10 9 8 12 12 N 1.34775 * 119.99819 * 180.02562 * 10 9 8 13 13 C 1.39475 * 119.99848 * 185.07801 * 12 10 9 14 14 C 1.38601 * 119.57903 * 185.36092 * 13 12 10 15 15 C 1.40804 * 118.79476 * 179.70082 * 14 13 12 16 16 C 1.41544 * 120.99563 * 180.25643 * 15 14 13 17 17 H 1.07997 * 120.00059 * 153.76040 * 16 15 14 18 18 C 1.40038 * 120.00047 * 333.75311 * 16 15 14 19 19 N 1.30743 * 119.99889 * 350.16358 * 18 16 15 20 20 Si 1.86803 * 120.00022 * 170.15590 * 18 16 15 21 21 H 1.48496 * 109.46948 * 90.00321 * 20 18 16 22 22 H 1.48499 * 109.47008 * 210.00542 * 20 18 16 23 23 H 1.48502 * 109.46960 * 330.00361 * 20 18 16 24 24 C 1.41178 * 118.00892 * 0.28298 * 15 14 13 25 25 C 1.37585 * 119.01231 * 359.97438 * 24 15 14 26 26 N 1.32077 * 121.11109 * 0.02562 * 25 24 15 27 27 H 1.08992 * 109.47629 * 300.00283 * 1 2 3 28 28 H 1.09002 * 109.47194 * 60.00264 * 1 2 3 29 29 H 1.08996 * 109.47113 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46860 * 179.97438 * 3 2 1 31 31 H 1.09002 * 109.46999 * 299.99855 * 3 2 1 32 32 H 1.08995 * 109.46920 * 60.00168 * 3 2 1 33 33 H 1.08996 * 109.47468 * 300.00285 * 4 2 1 34 34 H 1.09001 * 109.46657 * 59.99950 * 4 2 1 35 35 H 1.08996 * 109.47285 * 179.97438 * 4 2 1 36 36 H 1.09004 * 109.47252 * 59.99556 * 7 5 2 37 37 H 1.09002 * 109.47074 * 300.00577 * 7 5 2 38 38 H 1.09003 * 109.46580 * 60.00155 * 8 7 5 39 39 H 1.08998 * 109.47143 * 300.00146 * 8 7 5 40 40 H 1.09000 * 109.46749 * 59.99672 * 9 8 7 41 41 H 1.09002 * 109.47207 * 300.00741 * 9 8 7 42 42 H 0.97002 * 120.00068 * 5.07889 * 12 10 9 43 43 H 1.08002 * 120.59791 * 359.97438 * 14 13 12 44 44 H 0.96997 * 119.99660 * 180.02562 * 19 18 16 45 45 H 1.07996 * 120.49233 * 179.97438 * 24 15 14 46 46 H 1.08005 * 119.44490 * 180.02562 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 2.0323 -0.7104 1.2304 6 8 1.2475 -1.1697 2.0251 7 6 3.5139 -0.8476 1.4693 8 6 3.7517 -1.6028 2.7785 9 6 5.2560 -1.7427 3.0206 10 6 5.4902 -2.4871 4.3097 11 8 4.5469 -2.8687 4.9696 12 7 6.7479 -2.7288 4.7293 13 6 6.9664 -3.5082 5.8652 14 6 8.2546 -3.6594 6.3537 15 6 8.4555 -4.4446 7.5051 16 6 9.7505 -4.6259 8.0469 17 1 9.8706 -4.8417 9.0983 18 6 10.8760 -4.5255 7.2197 19 7 10.7297 -4.4570 5.9223 20 14 12.5863 -4.4893 7.9700 21 1 13.1046 -5.8759 8.0878 22 1 13.4913 -3.6947 7.1011 23 1 12.5227 -3.8685 9.3175 24 6 7.3267 -5.0462 8.1026 25 6 6.0869 -4.8428 7.5417 26 7 5.9408 -4.0986 6.4604 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.6767 -1.7489 -1.2493 34 1 1.6767 -0.2074 -2.1392 35 1 3.1300 -0.7209 -1.2495 36 1 3.9647 0.1427 1.5344 37 1 3.9654 -1.3986 0.6442 38 1 3.3009 -2.5932 2.7136 39 1 3.3003 -1.0514 3.6032 40 1 5.7071 -0.7525 3.0851 41 1 5.7070 -2.2943 2.1957 42 1 7.5012 -2.3608 4.2414 43 1 9.0886 -3.1800 5.8627 44 1 11.5093 -4.3878 5.3494 45 1 7.4347 -5.6569 8.9867 46 1 5.2185 -5.2994 7.9933 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000649163751.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:38 Heat of formation + Delta-G solvation = -64.644132 kcal Electronic energy + Delta-G solvation = -25534.941728 eV Core-core repulsion = 21809.792917 eV Total energy + Delta-G solvation = -3725.148811 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.32351 -39.52628 -37.82218 -36.03710 -34.52508 -34.05719 -33.68480 -30.54815 -29.59462 -28.21976 -27.75808 -27.23236 -25.99361 -24.18082 -22.06983 -21.83183 -20.82405 -19.57837 -18.57447 -17.64273 -16.89077 -16.30960 -16.09717 -15.72423 -15.31668 -15.11785 -15.08966 -14.28292 -14.19205 -14.13182 -13.93565 -13.41281 -13.29311 -12.90686 -12.65211 -12.61653 -12.60752 -12.54202 -12.40191 -12.09903 -11.91153 -11.77281 -11.53815 -11.43326 -11.32072 -11.17881 -11.15933 -10.90979 -10.74601 -10.29257 -10.14258 -9.71788 -9.61328 -9.39319 -9.27133 -7.98221 -7.71383 -7.02720 -6.74510 -4.63081 1.81723 2.57253 2.79130 3.00448 3.05199 3.20351 3.49186 3.54282 3.83532 3.85253 4.32997 4.46947 4.57905 4.69023 4.78868 4.92747 5.01115 5.14608 5.16442 5.22870 5.32127 5.37379 5.42540 5.43437 5.48535 5.52291 5.56392 5.63234 5.68951 5.82403 5.82688 5.93175 6.05519 6.12614 6.37812 6.59903 6.66907 6.81036 6.95954 7.13126 7.36944 7.39694 7.48265 7.79621 7.96434 8.23338 8.44010 8.70964 8.75477 8.93429 9.70117 10.09229 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.026904 B = 0.002114 C = 0.001996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.485460 B =13239.579207 C =14023.275941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.118 4.118 3 C -0.139 4.139 4 C -0.139 4.139 5 C 0.362 3.638 6 O -0.442 6.442 7 C -0.172 4.172 8 C -0.095 4.095 9 C -0.140 4.140 10 C 0.495 3.505 11 O -0.481 6.481 12 N -0.661 5.661 13 C 0.335 3.665 14 C -0.239 4.239 15 C 0.141 3.859 16 C -0.454 4.454 17 H 0.081 0.919 18 C 0.075 3.925 19 N -0.796 5.796 20 Si 0.915 3.085 21 H -0.269 1.269 22 H -0.276 1.276 23 H -0.261 1.261 24 C -0.282 4.282 25 C 0.117 3.883 26 N -0.553 5.553 27 H 0.060 0.940 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.066 0.934 35 H 0.065 0.935 36 H 0.098 0.902 37 H 0.098 0.902 38 H 0.076 0.924 39 H 0.075 0.925 40 H 0.089 0.911 41 H 0.091 0.909 42 H 0.407 0.593 43 H 0.133 0.867 44 H 0.280 0.720 45 H 0.102 0.898 46 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.185 10.975 -15.748 20.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.119 4.119 3 C -0.196 4.196 4 C -0.196 4.196 5 C 0.236 3.764 6 O -0.314 6.314 7 C -0.209 4.209 8 C -0.133 4.133 9 C -0.180 4.180 10 C 0.280 3.720 11 O -0.351 6.351 12 N -0.307 5.307 13 C 0.110 3.890 14 C -0.265 4.265 15 C 0.132 3.868 16 C -0.486 4.486 17 H 0.099 0.901 18 C -0.143 4.143 19 N -0.423 5.423 20 Si 0.739 3.261 21 H -0.194 1.194 22 H -0.201 1.201 23 H -0.184 1.184 24 C -0.306 4.306 25 C -0.037 4.037 26 N -0.272 5.272 27 H 0.079 0.921 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.116 0.884 37 H 0.117 0.883 38 H 0.094 0.906 39 H 0.094 0.906 40 H 0.108 0.892 41 H 0.109 0.891 42 H 0.242 0.758 43 H 0.151 0.849 44 H 0.091 0.909 45 H 0.120 0.880 46 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -10.069 10.599 -15.467 21.283 hybrid contribution 2.285 0.024 0.222 2.296 sum -7.784 10.623 -15.245 20.146 Atomic orbital electron populations 1.21720 0.92751 1.02694 1.02021 1.21216 0.97756 0.97228 0.95691 1.21836 1.01563 0.93457 1.02729 1.21836 1.01573 1.00421 0.95772 1.24600 0.91351 0.75362 0.85131 1.90427 1.59088 1.37674 1.44179 1.22167 0.95216 1.03165 1.00396 1.21132 0.94197 1.01973 0.96013 1.21691 0.98487 1.01433 0.96405 1.20675 0.83226 0.80889 0.87256 1.90787 1.40897 1.48086 1.55352 1.43507 1.08459 1.51105 1.27652 1.18242 0.90511 0.92485 0.87766 1.21673 0.93992 1.07522 1.03298 1.17600 0.92661 0.86689 0.89817 1.19573 0.89840 1.42577 0.96565 0.90086 1.25952 1.01794 0.92016 0.94541 1.69744 1.32582 1.35721 1.04206 0.86206 0.80567 0.79188 0.80147 1.19406 1.20072 1.18445 1.21927 0.94209 1.08921 1.05543 1.21764 0.95554 0.94724 0.91696 1.67190 1.32380 1.15043 1.12617 0.92106 0.92153 0.92098 0.91637 0.91509 0.92192 0.92169 0.91515 0.91630 0.88365 0.88335 0.90565 0.90629 0.89231 0.89110 0.75792 0.84945 0.90854 0.87970 0.85892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.06 7.76 37.16 0.29 -0.77 16 2 C -0.12 -0.86 0.87 -155.66 -0.14 -1.00 16 3 C -0.14 -0.77 8.26 37.16 0.31 -0.47 16 4 C -0.14 -0.79 8.26 37.16 0.31 -0.48 16 5 C 0.36 3.69 5.97 -29.04 -0.17 3.52 16 6 O -0.44 -6.40 15.61 6.00 0.09 -6.30 16 7 C -0.17 -1.47 4.97 -27.88 -0.14 -1.61 16 8 C -0.10 -1.21 3.79 -26.73 -0.10 -1.31 16 9 C -0.14 -1.69 5.70 -27.89 -0.16 -1.85 16 10 C 0.49 9.25 7.78 -10.99 -0.09 9.17 16 11 O -0.48 -11.30 14.28 5.56 0.08 -11.22 16 12 N -0.66 -12.91 5.39 -11.49 -0.06 -12.97 16 13 C 0.33 8.22 7.40 -154.70 -1.15 7.07 16 14 C -0.24 -6.11 8.61 -38.48 -0.33 -6.44 16 15 C 0.14 3.73 5.60 -106.55 -0.60 3.14 16 16 C -0.45 -11.71 9.14 -37.65 -0.34 -12.06 16 17 H 0.08 2.00 7.87 -52.49 -0.41 1.59 16 18 C 0.07 1.80 5.31 -17.34 -0.09 1.71 16 19 N -0.80 -19.50 10.70 55.55 0.59 -18.91 16 20 Si 0.91 17.93 29.57 -169.99 -5.03 12.90 16 21 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 22 H -0.28 -5.25 7.11 56.52 0.40 -4.84 16 23 H -0.26 -5.09 7.11 56.52 0.40 -4.69 16 24 C -0.28 -7.03 9.90 -38.70 -0.38 -7.41 16 25 C 0.12 2.88 11.15 -17.68 -0.20 2.68 16 26 N -0.55 -14.45 7.89 -12.52 -0.10 -14.55 16 27 H 0.06 0.54 8.10 -51.93 -0.42 0.12 16 28 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.54 8.10 -51.93 -0.42 0.12 16 30 H 0.06 0.29 7.28 -51.93 -0.38 -0.08 16 31 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.06 0.30 7.29 -51.93 -0.38 -0.08 16 36 H 0.10 0.62 7.38 -51.93 -0.38 0.24 16 37 H 0.10 0.64 7.38 -51.93 -0.38 0.26 16 38 H 0.08 1.15 8.06 -51.93 -0.42 0.73 16 39 H 0.07 1.12 8.06 -51.93 -0.42 0.70 16 40 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 42 H 0.41 6.40 8.70 -40.82 -0.36 6.05 16 43 H 0.13 3.33 6.11 -52.49 -0.32 3.01 16 44 H 0.28 6.21 8.29 -40.82 -0.34 5.87 16 45 H 0.10 2.33 8.06 -52.49 -0.42 1.91 16 46 H 0.12 2.66 8.06 -52.48 -0.42 2.23 16 LS Contribution 380.94 15.07 5.74 5.74 Total: -1.00 -33.75 380.94 -8.89 -42.64 By element: Atomic # 1 Polarization: 16.01 SS G_CDS: -7.23 Total: 8.78 kcal Atomic # 6 Polarization: -3.13 SS G_CDS: -2.98 Total: -6.11 kcal Atomic # 7 Polarization: -46.86 SS G_CDS: 0.43 Total: -46.43 kcal Atomic # 8 Polarization: -17.70 SS G_CDS: 0.17 Total: -17.52 kcal Atomic # 14 Polarization: 17.93 SS G_CDS: -5.03 Total: 12.90 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.75 -8.89 -42.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000649163751.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.006 kcal (2) G-P(sol) polarization free energy of solvation -33.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds