Wall clock time and date at job start Tue Mar 31 2020 12:09:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.46866 * 2 1 4 4 C 1.53001 * 109.47259 * 239.99913 * 2 1 3 5 5 C 1.50695 * 109.46813 * 119.99967 * 2 1 3 6 6 O 1.20761 * 120.00432 * 0.02562 * 5 2 1 7 7 C 1.50700 * 119.99939 * 180.02562 * 5 2 1 8 8 C 1.53001 * 109.47452 * 179.97438 * 7 5 2 9 9 C 1.53001 * 109.47346 * 179.97438 * 8 7 5 10 10 C 1.50692 * 109.47054 * 180.02562 * 9 8 7 11 11 O 1.21276 * 120.00154 * 0.02562 * 10 9 8 12 12 N 1.34775 * 119.99819 * 180.02562 * 10 9 8 13 13 C 1.39475 * 119.99848 * 185.07801 * 12 10 9 14 14 C 1.38601 * 119.57903 * 185.36092 * 13 12 10 15 15 C 1.40804 * 118.79476 * 179.70082 * 14 13 12 16 16 C 1.41544 * 120.99563 * 180.25643 * 15 14 13 17 17 H 1.07997 * 120.00059 * 153.76040 * 16 15 14 18 18 C 1.40038 * 120.00047 * 333.75311 * 16 15 14 19 19 N 1.30743 * 119.99889 * 350.16358 * 18 16 15 20 20 Si 1.86803 * 120.00022 * 170.15590 * 18 16 15 21 21 H 1.48496 * 109.46948 * 90.00321 * 20 18 16 22 22 H 1.48499 * 109.47008 * 210.00542 * 20 18 16 23 23 H 1.48502 * 109.46960 * 330.00361 * 20 18 16 24 24 C 1.41178 * 118.00892 * 0.28298 * 15 14 13 25 25 C 1.37585 * 119.01231 * 359.97438 * 24 15 14 26 26 N 1.32077 * 121.11109 * 0.02562 * 25 24 15 27 27 H 1.08992 * 109.47629 * 300.00283 * 1 2 3 28 28 H 1.09002 * 109.47194 * 60.00264 * 1 2 3 29 29 H 1.08996 * 109.47113 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46860 * 179.97438 * 3 2 1 31 31 H 1.09002 * 109.46999 * 299.99855 * 3 2 1 32 32 H 1.08995 * 109.46920 * 60.00168 * 3 2 1 33 33 H 1.08996 * 109.47468 * 300.00285 * 4 2 1 34 34 H 1.09001 * 109.46657 * 59.99950 * 4 2 1 35 35 H 1.08996 * 109.47285 * 179.97438 * 4 2 1 36 36 H 1.09004 * 109.47252 * 59.99556 * 7 5 2 37 37 H 1.09002 * 109.47074 * 300.00577 * 7 5 2 38 38 H 1.09003 * 109.46580 * 60.00155 * 8 7 5 39 39 H 1.08998 * 109.47143 * 300.00146 * 8 7 5 40 40 H 1.09000 * 109.46749 * 59.99672 * 9 8 7 41 41 H 1.09002 * 109.47207 * 300.00741 * 9 8 7 42 42 H 0.97002 * 120.00068 * 5.07889 * 12 10 9 43 43 H 1.08002 * 120.59791 * 359.97438 * 14 13 12 44 44 H 0.96997 * 119.99660 * 180.02562 * 19 18 16 45 45 H 1.07996 * 120.49233 * 179.97438 * 24 15 14 46 46 H 1.08005 * 119.44490 * 180.02562 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 2.0323 -0.7104 1.2304 6 8 1.2475 -1.1697 2.0251 7 6 3.5139 -0.8476 1.4693 8 6 3.7517 -1.6028 2.7785 9 6 5.2560 -1.7427 3.0206 10 6 5.4902 -2.4871 4.3097 11 8 4.5469 -2.8687 4.9696 12 7 6.7479 -2.7288 4.7293 13 6 6.9664 -3.5082 5.8652 14 6 8.2546 -3.6594 6.3537 15 6 8.4555 -4.4446 7.5051 16 6 9.7505 -4.6259 8.0469 17 1 9.8706 -4.8417 9.0983 18 6 10.8760 -4.5255 7.2197 19 7 10.7297 -4.4570 5.9223 20 14 12.5863 -4.4893 7.9700 21 1 13.1046 -5.8759 8.0878 22 1 13.4913 -3.6947 7.1011 23 1 12.5227 -3.8685 9.3175 24 6 7.3267 -5.0462 8.1026 25 6 6.0869 -4.8428 7.5417 26 7 5.9408 -4.0986 6.4604 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.6767 -1.7489 -1.2493 34 1 1.6767 -0.2074 -2.1392 35 1 3.1300 -0.7209 -1.2495 36 1 3.9647 0.1427 1.5344 37 1 3.9654 -1.3986 0.6442 38 1 3.3009 -2.5932 2.7136 39 1 3.3003 -1.0514 3.6032 40 1 5.7071 -0.7525 3.0851 41 1 5.7070 -2.2943 2.1957 42 1 7.5012 -2.3608 4.2414 43 1 9.0886 -3.1800 5.8627 44 1 11.5093 -4.3878 5.3494 45 1 7.4347 -5.6569 8.9867 46 1 5.2185 -5.2994 7.9933 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000649163751.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:37 Heat of formation + Delta-G solvation = -84.710426 kcal Electronic energy + Delta-G solvation = -25535.811868 eV Core-core repulsion = 21809.792917 eV Total energy + Delta-G solvation = -3726.018951 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.32304 -40.98120 -39.57823 -36.68889 -36.17648 -35.47750 -35.21997 -32.46123 -30.98321 -29.53453 -28.15518 -27.94851 -27.86237 -25.21422 -23.84967 -23.25207 -22.03399 -21.10031 -19.45583 -19.35375 -18.34731 -17.44908 -17.10819 -17.04761 -16.88465 -16.19512 -16.12509 -16.05318 -15.67055 -15.19699 -15.07031 -14.62527 -14.47056 -14.46073 -14.33190 -13.92532 -13.31719 -13.19164 -13.18390 -13.06205 -12.86642 -12.77628 -12.76658 -12.68902 -12.52073 -12.44570 -12.09430 -11.90407 -11.85290 -11.72545 -11.68948 -11.47982 -11.18132 -10.97632 -10.32662 -9.93890 -9.60302 -8.87413 -8.58126 -6.58550 0.74061 0.99398 1.05861 1.41770 1.52884 1.56972 1.92480 2.19299 2.21655 2.82704 3.01573 3.63454 3.73251 3.76464 3.94664 3.98922 4.08096 4.08674 4.17945 4.40239 4.61449 4.66238 4.68480 4.72613 4.76617 4.77510 4.82817 4.87408 4.89033 4.92750 4.99822 5.02800 5.08574 5.09814 5.14561 5.24136 5.24430 5.36101 5.41188 5.41621 5.47201 5.65730 5.92208 6.15613 6.49340 6.62548 6.63311 6.78822 6.83527 7.36642 7.84779 8.29268 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.026904 B = 0.002114 C = 0.001996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.485460 B =13239.579207 C =14023.275941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.116 4.116 3 C -0.137 4.137 4 C -0.137 4.137 5 C 0.358 3.642 6 O -0.500 6.500 7 C -0.165 4.165 8 C -0.092 4.092 9 C -0.122 4.122 10 C 0.487 3.513 11 O -0.537 6.537 12 N -0.653 5.653 13 C 0.330 3.670 14 C -0.256 4.256 15 C 0.110 3.890 16 C -0.483 4.483 17 H 0.082 0.918 18 C 0.036 3.964 19 N -0.816 5.816 20 Si 0.991 3.009 21 H -0.264 1.264 22 H -0.262 1.262 23 H -0.260 1.260 24 C -0.297 4.297 25 C 0.109 3.891 26 N -0.582 5.582 27 H 0.042 0.958 28 H 0.081 0.919 29 H 0.042 0.958 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.048 0.952 33 H 0.047 0.953 34 H 0.082 0.918 35 H 0.085 0.915 36 H 0.134 0.866 37 H 0.132 0.868 38 H 0.040 0.960 39 H 0.043 0.957 40 H 0.131 0.869 41 H 0.127 0.873 42 H 0.425 0.575 43 H 0.132 0.868 44 H 0.292 0.708 45 H 0.115 0.885 46 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.800 12.627 -18.224 22.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.116 4.116 3 C -0.194 4.194 4 C -0.195 4.195 5 C 0.236 3.764 6 O -0.376 6.376 7 C -0.201 4.201 8 C -0.130 4.130 9 C -0.161 4.161 10 C 0.275 3.725 11 O -0.411 6.411 12 N -0.301 5.301 13 C 0.104 3.896 14 C -0.281 4.281 15 C 0.102 3.898 16 C -0.514 4.514 17 H 0.100 0.900 18 C -0.180 4.180 19 N -0.442 5.442 20 Si 0.811 3.189 21 H -0.189 1.189 22 H -0.186 1.186 23 H -0.184 1.184 24 C -0.320 4.320 25 C -0.045 4.045 26 N -0.302 5.302 27 H 0.062 0.938 28 H 0.100 0.900 29 H 0.061 0.939 30 H 0.104 0.896 31 H 0.101 0.899 32 H 0.067 0.933 33 H 0.066 0.934 34 H 0.101 0.899 35 H 0.103 0.897 36 H 0.151 0.849 37 H 0.149 0.851 38 H 0.059 0.941 39 H 0.062 0.938 40 H 0.149 0.851 41 H 0.145 0.855 42 H 0.263 0.737 43 H 0.150 0.850 44 H 0.103 0.897 45 H 0.133 0.867 46 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -7.670 12.279 -17.998 23.098 hybrid contribution 1.501 -0.504 0.965 1.855 sum -6.168 11.775 -17.033 21.606 Atomic orbital electron populations 1.21742 0.93841 1.01585 1.02202 1.21253 0.97008 0.98414 0.94973 1.21870 1.02814 0.91723 1.03017 1.21870 1.02804 0.99612 0.95173 1.25322 0.91992 0.73881 0.85202 1.90426 1.60513 1.40327 1.46305 1.22214 0.94408 1.04762 0.98764 1.21025 0.94227 1.00285 0.97488 1.21730 0.98310 1.02914 0.93161 1.21959 0.81881 0.79982 0.88694 1.90765 1.42408 1.50389 1.57489 1.43579 1.09919 1.50255 1.26339 1.18546 0.90003 0.92290 0.88767 1.21672 0.94366 1.08317 1.03762 1.18058 0.93659 0.87365 0.90746 1.19858 0.90574 1.43913 0.97059 0.89982 1.26828 1.05455 0.90902 0.94828 1.69769 1.34457 1.34643 1.05322 0.85069 0.75172 0.79403 0.79254 1.18893 1.18576 1.18404 1.22102 0.94153 1.09529 1.06255 1.22185 0.96383 0.94400 0.91514 1.67319 1.33203 1.16141 1.13521 0.93846 0.89964 0.93912 0.89632 0.89913 0.93307 0.93384 0.89899 0.89657 0.84868 0.85052 0.94073 0.93810 0.85086 0.85510 0.73671 0.85009 0.89670 0.86659 0.83647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.13 7.76 71.98 0.56 -1.57 16 2 C -0.12 -1.48 0.87 -52.93 -0.05 -1.53 16 3 C -0.14 -1.10 8.26 71.98 0.59 -0.51 16 4 C -0.14 -1.14 8.26 71.98 0.59 -0.55 16 5 C 0.36 7.05 5.97 29.10 0.17 7.22 16 6 O -0.50 -15.34 15.61 -1.45 -0.02 -15.36 16 7 C -0.16 -2.33 4.97 29.85 0.15 -2.18 16 8 C -0.09 -2.27 3.79 30.59 0.12 -2.15 16 9 C -0.12 -2.61 5.70 29.85 0.17 -2.44 16 10 C 0.49 18.04 7.78 87.65 0.68 18.72 16 11 O -0.54 -26.09 14.28 -3.02 -0.04 -26.14 16 12 N -0.65 -25.21 5.39 -308.67 -1.66 -26.88 16 13 C 0.33 16.50 7.40 132.75 0.98 17.48 16 14 C -0.26 -13.29 8.61 22.98 0.20 -13.10 16 15 C 0.11 5.98 5.60 -21.11 -0.12 5.86 16 16 C -0.48 -25.20 9.14 23.52 0.21 -24.99 16 17 H 0.08 4.11 7.87 -2.91 -0.02 4.08 16 18 C 0.04 1.72 5.31 85.29 0.45 2.17 16 19 N -0.82 -39.46 10.70 21.84 0.23 -39.22 16 20 Si 0.99 35.72 29.57 68.60 2.03 37.75 16 21 H -0.26 -9.30 7.11 99.48 0.71 -8.59 16 22 H -0.26 -8.78 7.11 99.48 0.71 -8.08 16 23 H -0.26 -9.30 7.11 99.48 0.71 -8.60 16 24 C -0.30 -15.18 9.90 22.84 0.23 -14.96 16 25 C 0.11 5.51 11.15 84.50 0.94 6.45 16 26 N -0.58 -31.25 7.89 -193.53 -1.53 -32.78 16 27 H 0.04 0.81 8.10 -2.39 -0.02 0.79 16 28 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.04 0.80 8.10 -2.39 -0.02 0.78 16 30 H 0.08 0.36 7.28 -2.39 -0.02 0.34 16 31 H 0.08 0.44 8.14 -2.39 -0.02 0.42 16 32 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 34 H 0.08 0.45 8.14 -2.39 -0.02 0.43 16 35 H 0.08 0.38 7.29 -2.39 -0.02 0.37 16 36 H 0.13 1.03 7.38 -2.38 -0.02 1.01 16 37 H 0.13 1.07 7.38 -2.39 -0.02 1.05 16 38 H 0.04 1.28 8.06 -2.39 -0.02 1.27 16 39 H 0.04 1.34 8.06 -2.39 -0.02 1.32 16 40 H 0.13 1.83 8.14 -2.39 -0.02 1.81 16 41 H 0.13 1.92 8.14 -2.39 -0.02 1.90 16 42 H 0.43 12.72 8.70 -92.71 -0.81 11.91 16 43 H 0.13 6.71 6.11 -2.91 -0.02 6.70 16 44 H 0.29 12.53 8.29 -92.71 -0.77 11.76 16 45 H 0.12 5.39 8.06 -2.91 -0.02 5.37 16 46 H 0.15 6.42 8.06 -2.91 -0.02 6.40 16 Total: -1.00 -79.47 380.94 5.07 -74.40 By element: Atomic # 1 Polarization: 34.11 SS G_CDS: 0.17 Total: 34.28 kcal Atomic # 6 Polarization: -11.95 SS G_CDS: 5.89 Total: -6.06 kcal Atomic # 7 Polarization: -95.92 SS G_CDS: -2.96 Total: -98.87 kcal Atomic # 8 Polarization: -41.43 SS G_CDS: -0.07 Total: -41.50 kcal Atomic # 14 Polarization: 35.72 SS G_CDS: 2.03 Total: 37.75 kcal Total: -79.47 5.07 -74.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000649163751.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.308 kcal (2) G-P(sol) polarization free energy of solvation -79.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds