Wall clock time and date at job start Tue Mar 31 2020 13:19:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47351 * 2 1 4 4 H 1.08991 * 110.00074 * 305.12878 * 3 2 1 5 5 C 1.54313 * 109.77108 * 66.28389 * 3 2 1 6 6 C 1.55153 * 102.86533 * 141.88676 * 5 3 2 7 7 C 1.54917 * 101.57998 * 324.29836 * 6 5 3 8 8 N 1.47019 * 109.88300 * 184.02871 * 3 2 1 9 9 C 1.34779 * 125.64539 * 61.68020 * 8 3 2 10 10 O 1.21575 * 120.00165 * 4.64649 * 9 8 3 11 11 N 1.34781 * 119.99637 * 184.64834 * 9 8 3 12 12 C 1.46502 * 119.99744 * 180.02562 * 11 9 8 13 13 C 1.50697 * 109.46856 * 179.97438 * 12 11 9 14 14 C 1.38302 * 119.93214 * 269.72361 * 13 12 11 15 15 C 1.38104 * 120.06524 * 180.28025 * 14 13 12 16 16 C 1.38877 * 119.93467 * 359.97438 * 15 14 13 17 17 O 1.35747 * 120.06711 * 180.02562 * 16 15 14 18 18 C 1.34832 * 116.99942 * 174.59605 * 17 16 15 19 19 H 1.08007 * 120.00052 * 5.09191 * 18 17 16 20 20 C 1.38648 * 120.00500 * 185.09420 * 18 17 16 21 21 N 1.31561 * 119.99873 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00329 * 180.02562 * 20 18 17 23 23 H 1.48491 * 109.47385 * 59.99961 * 22 20 18 24 24 H 1.48503 * 109.47233 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.46870 * 299.99695 * 22 20 18 26 26 C 1.38872 * 119.85995 * 0.02562 * 16 15 14 27 27 C 1.38101 * 119.93464 * 0.02562 * 26 16 15 28 28 H 1.08991 * 109.47309 * 184.80860 * 1 2 3 29 29 H 1.08999 * 109.47062 * 304.81206 * 1 2 3 30 30 H 1.09000 * 109.46615 * 64.80927 * 1 2 3 31 31 H 1.09004 * 109.47044 * 240.00209 * 2 1 3 32 32 H 1.09002 * 109.46874 * 120.00707 * 2 1 3 33 33 H 1.09005 * 110.93062 * 23.46725 * 5 3 2 34 34 H 1.09008 * 110.73889 * 260.21442 * 5 3 2 35 35 H 1.09004 * 111.00429 * 206.22652 * 6 5 3 36 36 H 1.08998 * 111.03711 * 82.39104 * 6 5 3 37 37 H 1.08996 * 110.36282 * 278.17559 * 7 6 5 38 38 H 1.09000 * 110.45669 * 155.89291 * 7 6 5 39 39 H 0.97002 * 120.00214 * 359.97438 * 11 9 8 40 40 H 1.09000 * 109.46640 * 59.99916 * 12 11 9 41 41 H 1.08994 * 109.47415 * 299.99805 * 12 11 9 42 42 H 1.07993 * 119.96888 * 0.26195 * 14 13 12 43 43 H 1.08005 * 120.03229 * 180.02562 * 15 14 13 44 44 H 0.96998 * 120.00504 * 180.02562 * 21 20 18 45 45 H 1.08005 * 120.03379 * 180.02562 * 26 16 15 46 46 H 1.08005 * 119.96883 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6087 1.9904 -0.8376 5 6 1.6634 2.1293 1.3295 6 6 2.9110 3.0000 1.6341 7 6 4.0558 2.0970 1.1108 8 7 3.5070 1.4541 -0.0971 9 6 4.2301 0.9635 -1.1232 10 8 3.6684 0.5341 -2.1122 11 7 5.5760 0.9490 -1.0529 12 6 6.3621 0.4162 -2.1684 13 6 7.8298 0.5147 -1.8409 14 6 8.5403 1.6485 -2.1909 15 6 9.8867 1.7393 -1.8972 16 6 10.5270 0.6909 -1.2494 17 8 11.8502 0.7775 -0.9589 18 6 12.3840 -0.2243 -0.2314 19 1 11.7846 -1.0861 0.0226 20 6 13.7025 -0.1483 0.1908 21 7 14.4329 0.9012 -0.1190 22 14 14.4423 -1.5366 1.1981 23 1 14.3880 -2.7984 0.4171 24 1 15.8554 -1.2148 1.5219 25 1 13.6715 -1.7000 2.4569 26 6 9.8107 -0.4462 -0.8993 27 6 8.4647 -0.5315 -1.1966 28 1 -0.3633 -1.0240 0.0861 29 1 -0.3633 0.5867 0.8437 30 1 -0.3632 0.4374 -0.9300 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5140 0.8899 33 1 1.5056 1.3927 2.1173 34 1 0.7786 2.7536 1.2044 35 1 3.0117 3.1774 2.7049 36 1 2.8743 3.9415 1.0861 37 1 4.3163 1.3451 1.8556 38 1 4.9293 2.6977 0.8573 39 1 6.0242 1.2920 -0.2639 40 1 6.1517 0.9928 -3.0691 41 1 6.0959 -0.6276 -2.3347 42 1 8.0419 2.4634 -2.6945 43 1 10.4410 2.6251 -2.1704 44 1 15.3554 0.9543 0.1760 45 1 10.3057 -1.2630 -0.3950 46 1 7.9070 -1.4154 -0.9242 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000727844966.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:19:33 Heat of formation + Delta-G solvation = -39.476880 kcal Electronic energy + Delta-G solvation = -25910.649468 eV Core-core repulsion = 22186.591991 eV Total energy + Delta-G solvation = -3724.057477 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.47654 -39.17250 -38.00252 -36.76882 -34.50721 -33.52281 -32.37647 -31.74180 -30.27866 -29.63721 -28.04655 -25.94215 -24.92467 -23.82862 -22.48312 -22.05240 -21.13405 -20.56473 -19.62335 -18.22544 -18.05420 -17.00885 -16.67295 -15.72727 -15.24030 -14.90839 -14.79027 -14.58456 -14.50766 -14.11328 -13.80694 -13.68641 -13.58051 -13.41661 -13.18562 -12.97948 -12.78237 -12.50842 -12.41852 -12.04287 -11.81325 -11.68584 -11.54602 -11.46001 -11.37367 -11.02017 -10.94642 -10.79905 -10.73100 -10.69221 -10.50805 -10.05718 -9.43364 -9.03756 -8.91398 -8.54520 -8.28398 -7.33288 -6.53331 -4.12368 2.02117 2.13049 2.72431 3.08600 3.09380 3.12334 3.25389 3.89873 3.99273 4.24945 4.34485 4.54469 4.55679 4.80831 4.96732 5.01258 5.02141 5.15222 5.16346 5.19262 5.24984 5.30998 5.44255 5.45406 5.45966 5.56876 5.67039 5.67470 5.80331 5.82821 5.83243 5.91020 6.00735 6.07573 6.12188 6.30795 6.35480 6.59153 6.64770 6.80600 6.94169 7.05567 7.16478 7.28089 7.34876 7.71385 7.91236 8.03058 8.66136 8.91845 9.60075 10.64089 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.021422 B = 0.002285 C = 0.002237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.724944 B =12248.433525 C =12514.201612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.136 4.136 3 C 0.158 3.842 4 H 0.073 0.927 5 C -0.128 4.128 6 C -0.132 4.132 7 C 0.097 3.903 8 N -0.637 5.637 9 C 0.720 3.280 10 O -0.593 6.593 11 N -0.737 5.737 12 C 0.198 3.802 13 C -0.214 4.214 14 C -0.054 4.054 15 C -0.196 4.196 16 C 0.160 3.840 17 O -0.173 6.173 18 C -0.394 4.394 19 H 0.093 0.907 20 C 0.040 3.960 21 N -0.860 5.860 22 Si 0.942 3.058 23 H -0.269 1.269 24 H -0.277 1.277 25 H -0.269 1.269 26 C -0.237 4.237 27 C -0.050 4.050 28 H 0.055 0.945 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.077 0.923 32 H 0.060 0.940 33 H 0.078 0.922 34 H 0.081 0.919 35 H 0.084 0.916 36 H 0.076 0.924 37 H 0.067 0.933 38 H 0.074 0.926 39 H 0.396 0.604 40 H 0.064 0.936 41 H 0.064 0.936 42 H 0.112 0.888 43 H 0.118 0.882 44 H 0.272 0.728 45 H 0.128 0.872 46 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.659 2.037 4.707 23.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.175 4.175 3 C 0.054 3.946 4 H 0.091 0.909 5 C -0.166 4.166 6 C -0.170 4.170 7 C -0.026 4.026 8 N -0.376 5.376 9 C 0.422 3.578 10 O -0.471 6.471 11 N -0.392 5.392 12 C 0.075 3.925 13 C -0.215 4.215 14 C -0.073 4.073 15 C -0.215 4.215 16 C 0.106 3.894 17 O -0.076 6.076 18 C -0.470 4.470 19 H 0.110 0.890 20 C -0.165 4.165 21 N -0.494 5.494 22 Si 0.766 3.234 23 H -0.194 1.194 24 H -0.202 1.202 25 H -0.194 1.194 26 C -0.256 4.256 27 C -0.069 4.069 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.096 0.904 32 H 0.079 0.921 33 H 0.096 0.904 34 H 0.099 0.901 35 H 0.102 0.898 36 H 0.095 0.905 37 H 0.085 0.915 38 H 0.093 0.907 39 H 0.231 0.769 40 H 0.082 0.918 41 H 0.082 0.918 42 H 0.130 0.870 43 H 0.136 0.864 44 H 0.082 0.918 45 H 0.146 0.854 46 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -22.554 1.926 3.859 22.963 hybrid contribution 0.736 -0.576 0.953 1.335 sum -21.818 1.351 4.812 22.383 Atomic orbital electron populations 1.21716 0.95288 1.01747 1.01760 1.21916 0.95939 0.96501 1.03128 1.21391 0.79203 0.96359 0.97684 0.90910 1.22741 0.98231 0.99053 0.96554 1.22754 0.94208 0.98285 1.01760 1.22280 0.97278 0.95716 0.87332 1.47683 1.06633 1.63461 1.19844 1.15519 0.81595 0.78738 0.81977 1.90891 1.70671 1.54213 1.31373 1.45553 1.03901 1.67393 1.22324 1.19833 0.86411 0.98542 0.87707 1.19229 0.94196 0.97374 1.10715 1.20536 0.93065 0.96242 0.97410 1.20214 0.94450 0.99144 1.07684 1.19436 0.84943 0.92841 0.92214 1.83978 1.16583 1.45181 1.61828 1.21305 0.96052 0.98319 1.31303 0.88988 1.25316 0.95383 0.98289 0.97470 1.70026 1.08767 1.27850 1.42743 0.85764 0.78321 0.79701 0.79575 1.19419 1.20210 1.19449 1.21155 0.94809 1.00158 1.09525 1.20648 0.93881 0.96860 0.95473 0.92639 0.92683 0.92625 0.90440 0.92095 0.90359 0.90072 0.89791 0.90526 0.91504 0.90735 0.76920 0.91773 0.91786 0.86971 0.86386 0.91828 0.85436 0.87411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.82 37.16 0.36 -0.73 16 2 C -0.14 -1.33 5.39 -26.73 -0.14 -1.48 16 3 C 0.16 1.52 2.89 -66.96 -0.19 1.32 16 4 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 5 C -0.13 -0.82 5.47 -24.90 -0.14 -0.95 16 6 C -0.13 -0.82 7.08 -24.58 -0.17 -0.99 16 7 C 0.10 0.81 6.48 -2.52 -0.02 0.79 16 8 N -0.64 -7.22 3.07 -168.70 -0.52 -7.74 16 9 C 0.72 10.50 8.22 -86.91 -0.71 9.79 16 10 O -0.59 -10.69 15.51 5.30 0.08 -10.61 16 11 N -0.74 -10.00 5.51 -66.42 -0.37 -10.36 16 12 C 0.20 2.90 5.80 -5.19 -0.03 2.87 16 13 C -0.21 -3.48 5.25 -104.58 -0.55 -4.03 16 14 C -0.05 -0.91 9.69 -39.61 -0.38 -1.29 16 15 C -0.20 -3.94 9.99 -39.39 -0.39 -4.34 16 16 C 0.16 3.72 6.65 -39.11 -0.26 3.46 16 17 O -0.17 -4.79 9.76 0.05 0.00 -4.79 16 18 C -0.39 -10.68 9.49 30.88 0.29 -10.39 16 19 H 0.09 2.30 5.20 -52.48 -0.27 2.02 16 20 C 0.04 1.08 5.49 -17.52 -0.10 0.99 16 21 N -0.86 -24.62 13.67 55.48 0.76 -23.87 16 22 Si 0.94 19.98 29.55 -169.99 -5.02 14.95 16 23 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 24 H -0.28 -5.76 7.11 56.52 0.40 -5.35 16 25 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 26 C -0.24 -4.92 9.17 -39.40 -0.36 -5.28 16 27 C -0.05 -0.87 9.69 -39.61 -0.38 -1.25 16 28 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.05 0.33 7.30 -51.93 -0.38 -0.05 16 30 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.08 1.00 6.90 -51.93 -0.36 0.64 16 32 H 0.06 0.58 8.04 -51.93 -0.42 0.16 16 33 H 0.08 0.46 7.79 -51.93 -0.40 0.05 16 34 H 0.08 0.41 8.14 -51.92 -0.42 -0.01 16 35 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.07 0.61 7.49 -51.93 -0.39 0.22 16 39 H 0.40 4.87 7.06 -40.82 -0.29 4.58 16 40 H 0.06 0.95 8.08 -51.93 -0.42 0.53 16 41 H 0.06 0.96 8.08 -51.93 -0.42 0.54 16 42 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 43 H 0.12 2.31 8.06 -52.48 -0.42 1.88 16 44 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 45 H 0.13 2.66 5.64 -52.48 -0.30 2.36 16 46 H 0.11 1.65 8.06 -52.48 -0.42 1.23 16 LS Contribution 376.02 15.07 5.67 5.67 Total: -1.00 -31.66 376.02 -9.58 -41.24 By element: Atomic # 1 Polarization: 14.03 SS G_CDS: -7.01 Total: 7.02 kcal Atomic # 6 Polarization: -8.33 SS G_CDS: -3.18 Total: -11.51 kcal Atomic # 7 Polarization: -41.84 SS G_CDS: -0.12 Total: -41.97 kcal Atomic # 8 Polarization: -15.48 SS G_CDS: 0.08 Total: -15.40 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -5.02 Total: 14.95 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -31.66 -9.58 -41.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000727844966.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.765 kcal (2) G-P(sol) polarization free energy of solvation -31.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds