Wall clock time and date at job start Tue Mar 31 2020 13:19:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47351 * 2 1 4 4 H 1.08991 * 110.00074 * 305.12878 * 3 2 1 5 5 C 1.54313 * 109.77108 * 66.28389 * 3 2 1 6 6 C 1.55153 * 102.86533 * 141.88676 * 5 3 2 7 7 C 1.54917 * 101.57998 * 324.29836 * 6 5 3 8 8 N 1.47019 * 109.88300 * 184.02871 * 3 2 1 9 9 C 1.34779 * 125.64539 * 61.68020 * 8 3 2 10 10 O 1.21575 * 120.00165 * 4.64649 * 9 8 3 11 11 N 1.34781 * 119.99637 * 184.64834 * 9 8 3 12 12 C 1.46502 * 119.99744 * 180.02562 * 11 9 8 13 13 C 1.50697 * 109.46856 * 179.97438 * 12 11 9 14 14 C 1.38302 * 119.93214 * 269.72361 * 13 12 11 15 15 C 1.38104 * 120.06524 * 180.28025 * 14 13 12 16 16 C 1.38877 * 119.93467 * 359.97438 * 15 14 13 17 17 O 1.35747 * 120.06711 * 180.02562 * 16 15 14 18 18 C 1.34832 * 116.99942 * 174.59605 * 17 16 15 19 19 H 1.08007 * 120.00052 * 5.09191 * 18 17 16 20 20 C 1.38648 * 120.00500 * 185.09420 * 18 17 16 21 21 N 1.31561 * 119.99873 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00329 * 180.02562 * 20 18 17 23 23 H 1.48491 * 109.47385 * 59.99961 * 22 20 18 24 24 H 1.48503 * 109.47233 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.46870 * 299.99695 * 22 20 18 26 26 C 1.38872 * 119.85995 * 0.02562 * 16 15 14 27 27 C 1.38101 * 119.93464 * 0.02562 * 26 16 15 28 28 H 1.08991 * 109.47309 * 184.80860 * 1 2 3 29 29 H 1.08999 * 109.47062 * 304.81206 * 1 2 3 30 30 H 1.09000 * 109.46615 * 64.80927 * 1 2 3 31 31 H 1.09004 * 109.47044 * 240.00209 * 2 1 3 32 32 H 1.09002 * 109.46874 * 120.00707 * 2 1 3 33 33 H 1.09005 * 110.93062 * 23.46725 * 5 3 2 34 34 H 1.09008 * 110.73889 * 260.21442 * 5 3 2 35 35 H 1.09004 * 111.00429 * 206.22652 * 6 5 3 36 36 H 1.08998 * 111.03711 * 82.39104 * 6 5 3 37 37 H 1.08996 * 110.36282 * 278.17559 * 7 6 5 38 38 H 1.09000 * 110.45669 * 155.89291 * 7 6 5 39 39 H 0.97002 * 120.00214 * 359.97438 * 11 9 8 40 40 H 1.09000 * 109.46640 * 59.99916 * 12 11 9 41 41 H 1.08994 * 109.47415 * 299.99805 * 12 11 9 42 42 H 1.07993 * 119.96888 * 0.26195 * 14 13 12 43 43 H 1.08005 * 120.03229 * 180.02562 * 15 14 13 44 44 H 0.96998 * 120.00504 * 180.02562 * 21 20 18 45 45 H 1.08005 * 120.03379 * 180.02562 * 26 16 15 46 46 H 1.08005 * 119.96883 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6087 1.9904 -0.8376 5 6 1.6634 2.1293 1.3295 6 6 2.9110 3.0000 1.6341 7 6 4.0558 2.0970 1.1108 8 7 3.5070 1.4541 -0.0971 9 6 4.2301 0.9635 -1.1232 10 8 3.6684 0.5341 -2.1122 11 7 5.5760 0.9490 -1.0529 12 6 6.3621 0.4162 -2.1684 13 6 7.8298 0.5147 -1.8409 14 6 8.5403 1.6485 -2.1909 15 6 9.8867 1.7393 -1.8972 16 6 10.5270 0.6909 -1.2494 17 8 11.8502 0.7775 -0.9589 18 6 12.3840 -0.2243 -0.2314 19 1 11.7846 -1.0861 0.0226 20 6 13.7025 -0.1483 0.1908 21 7 14.4329 0.9012 -0.1190 22 14 14.4423 -1.5366 1.1981 23 1 14.3880 -2.7984 0.4171 24 1 15.8554 -1.2148 1.5219 25 1 13.6715 -1.7000 2.4569 26 6 9.8107 -0.4462 -0.8993 27 6 8.4647 -0.5315 -1.1966 28 1 -0.3633 -1.0240 0.0861 29 1 -0.3633 0.5867 0.8437 30 1 -0.3632 0.4374 -0.9300 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5140 0.8899 33 1 1.5056 1.3927 2.1173 34 1 0.7786 2.7536 1.2044 35 1 3.0117 3.1774 2.7049 36 1 2.8743 3.9415 1.0861 37 1 4.3163 1.3451 1.8556 38 1 4.9293 2.6977 0.8573 39 1 6.0242 1.2920 -0.2639 40 1 6.1517 0.9928 -3.0691 41 1 6.0959 -0.6276 -2.3347 42 1 8.0419 2.4634 -2.6945 43 1 10.4410 2.6251 -2.1704 44 1 15.3554 0.9543 0.1760 45 1 10.3057 -1.2630 -0.3950 46 1 7.9070 -1.4154 -0.9242 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000727844966.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:19:33 Heat of formation + Delta-G solvation = -58.562398 kcal Electronic energy + Delta-G solvation = -25911.477078 eV Core-core repulsion = 22186.591991 eV Total energy + Delta-G solvation = -3724.885087 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.46811 -40.79862 -39.07265 -38.31028 -35.73831 -34.45807 -34.15485 -32.60912 -31.84528 -31.01540 -28.71599 -27.66529 -26.35497 -24.71858 -23.65639 -23.21290 -22.26286 -21.69466 -20.63368 -19.87552 -19.19263 -18.76334 -17.54469 -16.83575 -16.50524 -16.42350 -16.08415 -15.84540 -15.56298 -15.44854 -15.37119 -15.01445 -14.56066 -14.36998 -14.29848 -14.19968 -13.95478 -13.71281 -13.48667 -13.15091 -13.05707 -12.95081 -12.54380 -12.51787 -12.39393 -12.23582 -12.14714 -12.10433 -12.06192 -11.57643 -11.47559 -11.22676 -11.20826 -10.80044 -10.20229 -9.82677 -9.46637 -9.03213 -8.48326 -6.16736 0.51039 0.56480 1.35847 1.45089 1.51657 1.71103 2.13709 2.17180 2.76370 3.05197 3.24257 3.47382 3.65528 3.69885 3.86682 3.94309 4.01983 4.16158 4.19242 4.27020 4.38035 4.44608 4.52751 4.55445 4.58254 4.68701 4.72472 4.79409 4.82647 4.98338 5.02646 5.03595 5.11595 5.13594 5.16941 5.24249 5.25428 5.28520 5.40441 5.47974 5.49853 5.54827 5.67835 5.74396 6.00831 6.08683 6.14524 6.96194 6.98863 7.55906 7.75007 8.74118 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.021422 B = 0.002285 C = 0.002237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.724944 B =12248.433525 C =12514.201612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.132 4.132 3 C 0.149 3.851 4 H 0.058 0.942 5 C -0.118 4.118 6 C -0.125 4.125 7 C 0.089 3.911 8 N -0.637 5.637 9 C 0.714 3.286 10 O -0.633 6.633 11 N -0.731 5.731 12 C 0.204 3.796 13 C -0.182 4.182 14 C -0.043 4.043 15 C -0.203 4.203 16 C 0.124 3.876 17 O -0.228 6.228 18 C -0.414 4.414 19 H 0.103 0.897 20 C -0.021 4.021 21 N -0.918 5.918 22 Si 1.018 2.982 23 H -0.258 1.258 24 H -0.273 1.273 25 H -0.256 1.256 26 C -0.243 4.243 27 C -0.045 4.045 28 H 0.058 0.942 29 H 0.076 0.924 30 H 0.050 0.950 31 H 0.039 0.961 32 H 0.063 0.937 33 H 0.090 0.910 34 H 0.099 0.901 35 H 0.107 0.893 36 H 0.076 0.924 37 H 0.075 0.925 38 H 0.076 0.924 39 H 0.404 0.596 40 H 0.068 0.932 41 H 0.066 0.934 42 H 0.146 0.854 43 H 0.116 0.884 44 H 0.273 0.727 45 H 0.121 0.879 46 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.650 1.734 6.234 26.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.170 4.170 3 C 0.046 3.954 4 H 0.076 0.924 5 C -0.156 4.156 6 C -0.162 4.162 7 C -0.034 4.034 8 N -0.374 5.374 9 C 0.416 3.584 10 O -0.514 6.514 11 N -0.387 5.387 12 C 0.081 3.919 13 C -0.183 4.183 14 C -0.061 4.061 15 C -0.223 4.223 16 C 0.073 3.927 17 O -0.134 6.134 18 C -0.490 4.490 19 H 0.121 0.879 20 C -0.219 4.219 21 N -0.556 5.556 22 Si 0.837 3.163 23 H -0.183 1.183 24 H -0.197 1.197 25 H -0.181 1.181 26 C -0.262 4.262 27 C -0.063 4.063 28 H 0.077 0.923 29 H 0.095 0.905 30 H 0.069 0.931 31 H 0.058 0.942 32 H 0.082 0.918 33 H 0.108 0.892 34 H 0.118 0.882 35 H 0.125 0.875 36 H 0.095 0.905 37 H 0.094 0.906 38 H 0.094 0.906 39 H 0.240 0.760 40 H 0.087 0.913 41 H 0.084 0.916 42 H 0.164 0.836 43 H 0.134 0.866 44 H 0.082 0.918 45 H 0.139 0.861 46 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -25.615 1.641 5.411 26.232 hybrid contribution 1.274 -0.418 0.353 1.387 sum -24.341 1.223 5.764 25.044 Atomic orbital electron populations 1.21686 0.93431 1.02407 1.02465 1.21846 0.97566 0.96292 1.01324 1.21601 0.78184 0.96398 0.99252 0.92394 1.22740 0.98977 0.99258 0.94610 1.22766 0.92836 0.97599 1.03041 1.22542 0.98276 0.96276 0.86263 1.47787 1.07442 1.62419 1.19765 1.15660 0.81700 0.78753 0.82264 1.90865 1.71376 1.55988 1.33219 1.45309 1.03726 1.67376 1.22243 1.19710 0.84919 0.98987 0.88274 1.19471 0.95043 0.96204 1.07614 1.20859 0.91616 0.97321 0.96308 1.20439 0.95780 0.98568 1.07477 1.19978 0.84335 0.94755 0.93680 1.83949 1.18869 1.46319 1.64220 1.21791 0.96779 0.98841 1.31630 0.87927 1.26582 0.95580 1.01149 0.98617 1.70172 1.09267 1.30652 1.45494 0.84660 0.77393 0.76205 0.78070 1.18253 1.19729 1.18056 1.21234 0.96066 0.99267 1.09617 1.20920 0.92580 0.98185 0.94628 0.92308 0.90480 0.93112 0.94220 0.91794 0.89178 0.88232 0.87506 0.90514 0.90635 0.90557 0.75982 0.91332 0.91608 0.83643 0.86559 0.91780 0.86078 0.84518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.86 9.82 71.98 0.71 -1.16 16 2 C -0.13 -2.43 5.39 30.60 0.16 -2.27 16 3 C 0.15 2.61 2.89 45.34 0.13 2.74 16 4 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 5 C -0.12 -1.10 5.47 31.78 0.17 -0.92 16 6 C -0.12 -1.10 7.08 31.99 0.23 -0.88 16 7 C 0.09 1.23 6.48 86.86 0.56 1.79 16 8 N -0.64 -13.29 3.07 -805.91 -2.47 -15.76 16 9 C 0.71 19.84 8.22 179.05 1.47 21.31 16 10 O -0.63 -22.50 15.51 -3.95 -0.06 -22.57 16 11 N -0.73 -18.11 5.51 -482.31 -2.66 -20.77 16 12 C 0.20 5.43 5.80 85.63 0.50 5.93 16 13 C -0.18 -5.44 5.25 -19.83 -0.10 -5.54 16 14 C -0.04 -1.35 9.69 22.25 0.22 -1.13 16 15 C -0.20 -8.21 9.99 22.39 0.22 -7.98 16 16 C 0.12 5.90 6.65 22.57 0.15 6.05 16 17 O -0.23 -13.30 9.76 -22.72 -0.22 -13.52 16 18 C -0.41 -23.47 9.49 67.92 0.64 -22.82 16 19 H 0.10 5.29 5.20 -2.91 -0.02 5.28 16 20 C -0.02 -1.18 5.49 84.83 0.47 -0.72 16 21 N -0.92 -55.28 13.67 21.61 0.30 -54.99 16 22 Si 1.02 41.78 29.55 68.60 2.03 43.81 16 23 H -0.26 -9.99 7.11 99.48 0.71 -9.29 16 24 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 25 H -0.26 -9.83 7.11 99.48 0.71 -9.12 16 26 C -0.24 -10.04 9.17 22.39 0.21 -9.83 16 27 C -0.04 -1.46 9.69 22.25 0.22 -1.24 16 28 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.08 0.68 7.30 -2.39 -0.02 0.66 16 30 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.04 1.03 6.90 -2.38 -0.02 1.02 16 32 H 0.06 1.11 8.04 -2.39 -0.02 1.09 16 33 H 0.09 0.67 7.79 -2.38 -0.02 0.66 16 34 H 0.10 0.62 8.14 -2.38 -0.02 0.60 16 35 H 0.11 0.53 8.14 -2.38 -0.02 0.51 16 36 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.08 1.04 7.49 -2.39 -0.02 1.02 16 39 H 0.40 8.81 7.06 -92.71 -0.65 8.16 16 40 H 0.07 1.83 8.08 -2.39 -0.02 1.81 16 41 H 0.07 1.79 8.08 -2.39 -0.02 1.78 16 42 H 0.15 3.70 8.06 -2.91 -0.02 3.68 16 43 H 0.12 4.65 8.06 -2.91 -0.02 4.63 16 44 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 45 H 0.12 5.11 5.64 -2.91 -0.02 5.09 16 46 H 0.14 3.73 8.06 -2.91 -0.02 3.71 16 Total: -1.00 -73.97 376.02 3.19 -70.78 By element: Atomic # 1 Polarization: 29.36 SS G_CDS: 0.33 Total: 29.69 kcal Atomic # 6 Polarization: -22.63 SS G_CDS: 5.95 Total: -16.68 kcal Atomic # 7 Polarization: -86.68 SS G_CDS: -4.83 Total: -91.51 kcal Atomic # 8 Polarization: -35.80 SS G_CDS: -0.28 Total: -36.08 kcal Atomic # 14 Polarization: 41.78 SS G_CDS: 2.03 Total: 43.81 kcal Total: -73.97 3.19 -70.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000727844966.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.215 kcal (2) G-P(sol) polarization free energy of solvation -73.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds