Wall clock time and date at job start Tue Mar 31 2020 12:28:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.46983 * 2 1 4 4 C 1.53006 * 109.47308 * 119.99815 * 2 1 3 5 5 N 1.46498 * 109.46891 * 64.99923 * 4 2 1 6 6 C 1.46496 * 120.00106 * 264.33996 * 5 4 2 7 7 C 1.50699 * 109.47356 * 270.00119 * 6 5 4 8 8 H 1.08001 * 119.99730 * 0.02562 * 7 6 5 9 9 C 1.37879 * 120.00147 * 180.02562 * 7 6 5 10 10 N 1.31512 * 119.99948 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 119.99849 * 179.97438 * 9 7 6 12 12 H 1.48499 * 109.47228 * 90.00008 * 11 9 7 13 13 H 1.48494 * 109.47009 * 209.99828 * 11 9 7 14 14 H 1.48503 * 109.47237 * 329.99975 * 11 9 7 15 15 C 1.34776 * 120.00052 * 84.33775 * 5 4 2 16 16 O 1.21588 * 120.00389 * 184.70501 * 15 5 4 17 17 C 1.47529 * 119.99701 * 4.71368 * 15 5 4 18 18 C 1.39916 * 120.69505 * 54.22095 * 17 15 5 19 19 C 1.38442 * 118.54393 * 179.97438 * 18 17 15 20 20 C 1.38398 * 119.62829 * 359.97438 * 19 18 17 21 21 N 1.32355 * 120.59972 * 359.97438 * 20 19 18 22 22 C 1.32037 * 122.19618 * 0.02562 * 21 20 19 23 23 O 1.35419 * 119.79621 * 180.02562 * 22 21 20 24 24 C 1.51554 * 109.52195 * 179.97438 * 20 19 18 25 25 C 1.54571 * 105.24857 * 17.26900 * 24 20 19 26 26 C 1.51281 * 130.45497 * 179.97438 * 19 18 17 27 27 H 1.09002 * 109.47202 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47216 * 299.99641 * 1 2 3 29 29 H 1.08996 * 109.47078 * 60.00182 * 1 2 3 30 30 H 1.08997 * 109.47426 * 239.99889 * 2 1 3 31 31 H 1.09008 * 109.46958 * 180.02562 * 3 2 1 32 32 H 1.08996 * 109.47064 * 299.99826 * 3 2 1 33 33 H 1.08999 * 109.47264 * 60.00473 * 3 2 1 34 34 H 1.09004 * 109.46998 * 305.00061 * 4 2 1 35 35 H 1.08995 * 109.47247 * 185.00062 * 4 2 1 36 36 H 1.08996 * 109.47257 * 30.00058 * 6 5 4 37 37 H 1.09005 * 109.47160 * 150.00130 * 6 5 4 38 38 H 0.96998 * 119.99507 * 179.97438 * 10 9 7 39 39 H 1.08000 * 120.72555 * 359.96003 * 18 17 15 40 40 H 0.96702 * 114.00331 * 269.98563 * 23 22 21 41 41 H 1.09001 * 110.28946 * 136.19712 * 24 20 19 42 42 H 1.09006 * 110.28861 * 258.22096 * 24 20 19 43 43 H 1.08994 * 110.90124 * 215.34250 * 25 24 20 44 44 H 1.09007 * 110.84603 * 91.72494 * 25 24 20 45 45 H 1.09007 * 110.30715 * 281.73887 * 26 19 18 46 46 H 1.08998 * 110.31617 * 43.81045 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.6524 -2.1328 1.1906 6 6 0.4358 -2.5871 1.8685 7 6 0.7705 -2.9983 3.2792 8 1 1.7877 -2.9278 3.6353 9 6 -0.2219 -3.4645 4.1152 10 7 -1.4606 -3.5499 3.6818 11 14 0.1932 -3.9749 5.8636 12 1 0.0594 -2.8033 6.7662 13 1 -0.7381 -5.0456 6.3009 14 1 1.5883 -4.4814 5.9135 15 6 2.4151 -3.0134 0.5130 16 8 2.0500 -4.1669 0.3917 17 6 3.6931 -2.5779 -0.0816 18 6 4.6680 -1.9503 0.7014 19 6 5.8513 -1.5604 0.0977 20 6 6.0413 -1.7981 -1.2524 21 7 5.1028 -2.3947 -1.9700 22 6 3.9570 -2.7863 -1.4436 23 8 3.0307 -3.3929 -2.2232 24 6 7.4035 -1.2821 -1.6707 25 6 8.1936 -1.1063 -0.3538 26 6 7.0680 -0.8720 0.6760 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6767 1.9564 0.8900 34 1 1.6054 -0.2617 2.1370 35 1 3.1263 -0.6443 1.2952 36 1 -0.2927 -1.7767 1.8895 37 1 0.0170 -3.4383 1.3317 38 1 -2.1586 -3.8782 4.2699 39 1 4.5011 -1.7737 1.7538 40 1 2.4058 -2.7829 -2.6387 41 1 7.9006 -2.0069 -2.3155 42 1 7.3041 -0.3258 -2.1842 43 1 8.8542 -0.2412 -0.4092 44 1 8.7554 -2.0094 -0.1150 45 1 6.8786 0.1950 0.7941 46 1 7.3344 -1.3167 1.6349 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000751379646.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:28:10 Heat of formation + Delta-G solvation = -48.132559 kcal Electronic energy + Delta-G solvation = -27887.400841 eV Core-core repulsion = 24162.968026 eV Total energy + Delta-G solvation = -3724.432815 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.06741 -39.05096 -37.82385 -36.32099 -35.22380 -33.63157 -33.01576 -32.13603 -29.20526 -28.02335 -27.45929 -26.91381 -25.61187 -23.84004 -23.36556 -21.86751 -21.07780 -20.29411 -18.91070 -18.30814 -17.09136 -16.52410 -16.43727 -16.04235 -15.81567 -15.36851 -14.60670 -14.42956 -14.28136 -14.20173 -13.47990 -13.21206 -13.18482 -13.04299 -12.81491 -12.66251 -12.47432 -12.15043 -12.07801 -12.02877 -11.60972 -11.59239 -11.46732 -11.40026 -11.13693 -11.03997 -10.95095 -10.75499 -10.58137 -10.38654 -10.16207 -9.71937 -9.60383 -9.55944 -8.92988 -8.55004 -8.44572 -7.68114 -6.06963 -4.11939 0.79654 1.11976 3.19613 3.27808 3.32150 3.35292 3.39205 3.65888 3.84042 4.24136 4.30624 4.42906 4.70528 4.72857 4.78884 4.89931 5.04971 5.06986 5.12754 5.26956 5.27569 5.36173 5.44317 5.48037 5.56161 5.64675 5.67042 5.74351 5.77343 5.80998 5.86377 5.96105 6.03972 6.05387 6.09951 6.11542 6.24506 6.39428 6.48289 6.62045 7.03575 7.40827 7.49444 7.56211 7.87369 7.89310 8.20147 8.33377 8.84674 9.01327 9.53192 11.00915 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.013364 B = 0.004285 C = 0.004009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2094.613974 B = 6532.151615 C = 6982.266831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.111 4.111 3 C -0.142 4.142 4 C 0.108 3.892 5 N -0.587 5.587 6 C 0.245 3.755 7 C -0.529 4.529 8 H 0.056 0.944 9 C 0.063 3.937 10 N -0.893 5.893 11 Si 0.897 3.103 12 H -0.280 1.280 13 H -0.285 1.285 14 H -0.274 1.274 15 C 0.555 3.445 16 O -0.517 6.517 17 C -0.172 4.172 18 C -0.023 4.023 19 C -0.166 4.166 20 C 0.148 3.852 21 N -0.502 5.502 22 C 0.352 3.648 23 O -0.464 6.464 24 C -0.070 4.070 25 C -0.118 4.118 26 C -0.076 4.076 27 H 0.066 0.934 28 H 0.057 0.943 29 H 0.046 0.954 30 H 0.058 0.942 31 H 0.050 0.950 32 H 0.053 0.947 33 H 0.058 0.942 34 H 0.086 0.914 35 H 0.067 0.933 36 H 0.039 0.961 37 H 0.044 0.956 38 H 0.264 0.736 39 H 0.144 0.856 40 H 0.398 0.602 41 H 0.085 0.915 42 H 0.091 0.909 43 H 0.083 0.917 44 H 0.076 0.924 45 H 0.084 0.916 46 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.263 12.522 -8.810 21.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.130 4.130 3 C -0.200 4.200 4 C -0.016 4.016 5 N -0.318 5.318 6 C 0.126 3.874 7 C -0.568 4.568 8 H 0.075 0.925 9 C -0.139 4.139 10 N -0.531 5.531 11 Si 0.724 3.276 12 H -0.206 1.206 13 H -0.211 1.211 14 H -0.199 1.199 15 C 0.340 3.660 16 O -0.393 6.393 17 C -0.179 4.179 18 C -0.048 4.048 19 C -0.168 4.168 20 C 0.010 3.990 21 N -0.220 5.220 22 C 0.173 3.827 23 O -0.270 6.270 24 C -0.108 4.108 25 C -0.156 4.156 26 C -0.113 4.113 27 H 0.085 0.915 28 H 0.076 0.924 29 H 0.065 0.935 30 H 0.077 0.923 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.077 0.923 34 H 0.104 0.896 35 H 0.085 0.915 36 H 0.057 0.943 37 H 0.062 0.938 38 H 0.073 0.927 39 H 0.162 0.838 40 H 0.256 0.744 41 H 0.104 0.896 42 H 0.109 0.891 43 H 0.102 0.898 44 H 0.095 0.905 45 H 0.103 0.897 46 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 15.172 11.132 -9.526 21.091 hybrid contribution -0.415 0.164 1.694 1.752 sum 14.758 11.296 -7.831 20.167 Atomic orbital electron populations 1.21868 0.94455 1.02932 1.01103 1.21542 0.97081 0.95836 0.98567 1.21764 1.00475 0.95921 1.01845 1.21746 0.99517 0.82274 0.98110 1.48147 1.26677 1.06595 1.50336 1.19398 0.80189 0.96242 0.91529 1.21433 0.94778 1.43842 0.96755 0.92536 1.24913 0.94879 0.95377 0.98768 1.69925 1.00404 1.46452 1.36370 0.86517 0.78385 0.78311 0.84341 1.20630 1.21054 1.19922 1.17687 0.83102 0.85898 0.79350 1.90807 1.71582 1.18001 1.58882 1.21239 0.98291 1.03025 0.95326 1.21119 0.90739 0.92586 1.00393 1.21323 0.96616 1.02613 0.96248 1.21671 0.94534 0.92617 0.90224 1.66233 1.01807 1.12302 1.41677 1.18758 0.87282 0.90172 0.86508 1.84813 1.42369 1.34356 1.65459 1.21080 0.89476 1.01694 0.98546 1.22362 0.96979 1.02775 0.93486 1.20935 0.90904 1.00322 0.99153 0.91500 0.92395 0.93529 0.92320 0.93083 0.92818 0.92329 0.89561 0.91492 0.94282 0.93775 0.92679 0.83790 0.74426 0.89622 0.89091 0.89818 0.90533 0.89730 0.90164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 8.33 37.16 0.31 -1.82 16 2 C -0.11 -1.51 3.08 -90.62 -0.28 -1.78 16 3 C -0.14 -1.53 9.19 37.16 0.34 -1.19 16 4 C 0.11 1.72 4.60 -4.04 -0.02 1.70 16 5 N -0.59 -12.14 2.19 -176.29 -0.39 -12.52 16 6 C 0.25 6.22 4.28 -5.20 -0.02 6.20 16 7 C -0.53 -14.70 9.39 -34.44 -0.32 -15.02 16 8 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 9 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 10 N -0.89 -26.14 13.29 55.43 0.74 -25.41 16 11 Si 0.90 21.62 29.54 -169.99 -5.02 16.60 16 12 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 13 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 14 H -0.27 -6.62 7.11 56.52 0.40 -6.21 16 15 C 0.56 12.01 6.80 -12.47 -0.08 11.92 16 16 O -0.52 -13.69 16.34 2.83 0.05 -13.64 16 17 C -0.17 -3.03 4.81 -104.71 -0.50 -3.53 16 18 C -0.02 -0.33 7.76 -38.88 -0.30 -0.63 16 19 C -0.17 -2.01 6.14 -104.20 -0.64 -2.65 16 20 C 0.15 1.90 7.32 -81.89 -0.60 1.30 16 21 N -0.50 -7.85 10.36 -8.88 -0.09 -7.94 16 22 C 0.35 6.01 7.76 -16.69 -0.13 5.88 16 23 O -0.46 -7.83 12.78 -20.40 -0.26 -8.10 16 24 C -0.07 -0.59 6.78 -26.64 -0.18 -0.77 16 25 C -0.12 -0.78 7.10 -25.20 -0.18 -0.96 16 26 C -0.08 -0.61 6.76 -26.89 -0.18 -0.80 16 27 H 0.07 1.16 6.34 -51.93 -0.33 0.83 16 28 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.82 7.94 -51.93 -0.41 0.41 16 31 H 0.05 0.51 8.14 -51.92 -0.42 0.08 16 32 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.09 1.42 8.03 -51.93 -0.42 1.00 16 35 H 0.07 0.95 4.44 -51.93 -0.23 0.72 16 36 H 0.04 0.99 6.63 -51.93 -0.34 0.64 16 37 H 0.04 1.29 7.36 -51.93 -0.38 0.90 16 38 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 39 H 0.14 1.98 7.27 -52.49 -0.38 1.60 16 40 H 0.40 4.73 9.06 45.56 0.41 5.14 16 41 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 374.11 15.07 5.64 5.64 Total: -1.00 -34.97 374.11 -8.51 -43.48 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: -6.28 Total: 2.36 kcal Atomic # 6 Polarization: 2.41 SS G_CDS: -2.89 Total: -0.48 kcal Atomic # 7 Polarization: -46.13 SS G_CDS: 0.26 Total: -45.87 kcal Atomic # 8 Polarization: -21.52 SS G_CDS: -0.21 Total: -21.74 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -34.97 -8.51 -43.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000751379646.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.651 kcal (2) G-P(sol) polarization free energy of solvation -34.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds