Wall clock time and date at job start Tue Mar 31 2020 12:28:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52993 * 109.46957 * 2 1 4 4 C 1.53002 * 109.47065 * 120.00144 * 2 1 3 5 5 N 1.46495 * 109.47030 * 174.10856 * 4 2 1 6 6 C 1.46500 * 120.00021 * 276.68284 * 5 4 2 7 7 C 1.50689 * 109.47210 * 270.00002 * 6 5 4 8 8 H 1.07998 * 120.00651 * 0.02562 * 7 6 5 9 9 C 1.37882 * 120.00153 * 180.02562 * 7 6 5 10 10 N 1.31509 * 120.00686 * 180.02562 * 9 7 6 11 11 Si 1.86804 * 119.99874 * 359.97438 * 9 7 6 12 12 H 1.48503 * 109.46998 * 89.99949 * 11 9 7 13 13 H 1.48499 * 109.47375 * 210.00194 * 11 9 7 14 14 H 1.48504 * 109.47243 * 330.00600 * 11 9 7 15 15 C 1.34776 * 119.99752 * 96.68834 * 5 4 2 16 16 O 1.21278 * 119.99788 * 185.40596 * 15 5 4 17 17 C 1.50695 * 120.00267 * 5.40096 * 15 5 4 18 18 C 1.52999 * 109.47372 * 174.69610 * 17 15 5 19 19 C 1.50695 * 109.47372 * 179.97438 * 18 17 15 20 20 O 1.21213 * 120.00332 * 0.02562 * 19 18 17 21 21 C 1.47552 * 120.00135 * 180.02562 * 19 18 17 22 22 C 1.39546 * 119.74558 * 179.97438 * 21 19 18 23 23 C 1.38566 * 119.04563 * 180.02562 * 22 21 19 24 24 C 1.38630 * 118.49706 * 0.02562 * 23 22 21 25 25 C 1.38664 * 119.39277 * 0.27627 * 24 23 22 26 26 N 1.31445 * 120.92420 * 359.42405 * 25 24 23 27 27 H 1.09003 * 109.47224 * 299.99783 * 1 2 3 28 28 H 1.09003 * 109.47476 * 60.00138 * 1 2 3 29 29 H 1.09003 * 109.46806 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47224 * 240.00217 * 2 1 3 31 31 H 1.09003 * 109.47318 * 304.70581 * 3 2 1 32 32 H 1.09001 * 109.46860 * 64.70984 * 3 2 1 33 33 H 1.09002 * 109.47071 * 184.70901 * 3 2 1 34 34 H 1.09003 * 109.47364 * 54.10801 * 4 2 1 35 35 H 1.09000 * 109.46816 * 294.10787 * 4 2 1 36 36 H 1.08999 * 109.47033 * 30.00632 * 6 5 4 37 37 H 1.09002 * 109.46815 * 149.99634 * 6 5 4 38 38 H 0.96998 * 120.00877 * 179.97438 * 10 9 7 39 39 H 1.09005 * 109.47272 * 54.69901 * 17 15 5 40 40 H 1.08999 * 109.47541 * 294.69988 * 17 15 5 41 41 H 1.09008 * 109.47179 * 59.99971 * 18 17 15 42 42 H 1.08999 * 109.47097 * 300.00650 * 18 17 15 43 43 H 1.08001 * 120.47796 * 0.04703 * 22 21 19 44 44 H 1.08000 * 120.75200 * 179.97438 * 23 22 21 45 45 H 1.08002 * 120.30275 * 180.02562 * 24 23 22 46 46 H 1.07993 * 119.53637 * 179.72014 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.4981 -0.8453 1.1805 6 6 4.1050 -1.9449 0.4263 7 6 4.2994 -3.1306 1.3358 8 1 4.0005 -3.0712 2.3719 9 6 4.8590 -4.2913 0.8453 10 7 5.0283 -5.3263 1.6388 11 14 5.3755 -4.3944 -0.9469 12 1 6.7864 -3.9511 -1.0817 13 1 5.2500 -5.7969 -1.4185 14 1 4.5008 -3.5168 -1.7655 15 6 4.2812 0.0523 1.8111 16 8 5.4854 0.0082 1.6743 17 6 3.6605 1.1106 2.6860 18 6 4.7646 1.9093 3.3817 19 6 4.1439 2.9680 4.2561 20 8 2.9378 3.0732 4.3173 21 6 5.0041 3.8768 5.0379 22 6 4.4237 4.8557 5.8455 23 6 5.2453 5.7017 6.5731 24 6 6.6183 5.5414 6.4686 25 6 7.1270 4.5513 5.6417 26 7 6.3258 3.7578 4.9663 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.6094 1.9801 -0.8448 32 1 1.7471 1.9313 0.9292 33 1 3.1267 1.4436 -0.0844 34 1 1.5931 -1.7140 1.3036 35 1 1.7653 -0.1502 2.1361 36 1 3.4505 -2.2238 -0.3995 37 1 5.0704 -1.6264 0.0330 38 1 5.4216 -6.1430 1.2937 39 1 3.0273 0.6366 3.4361 40 1 3.0580 1.7812 2.0733 41 1 5.3978 2.3834 2.6316 42 1 5.3670 1.2387 3.9944 43 1 3.3496 4.9523 5.9030 44 1 4.8255 6.4691 7.2065 45 1 7.2858 6.1844 7.0231 46 1 8.1963 4.4273 5.5552 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000771154535.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:28:33 Heat of formation + Delta-G solvation = -67.229477 kcal Electronic energy + Delta-G solvation = -26504.756870 eV Core-core repulsion = 22779.495950 eV Total energy + Delta-G solvation = -3725.260920 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.64607 -40.94689 -39.80955 -37.78728 -35.54505 -34.20511 -34.17813 -33.38353 -32.46662 -30.37806 -28.25286 -27.52797 -26.84363 -25.21329 -24.42466 -23.56337 -21.44021 -21.09290 -19.69852 -19.08413 -18.67330 -17.94649 -17.25623 -17.16525 -17.12058 -16.71559 -16.26662 -15.88236 -15.68895 -15.41614 -15.29027 -14.86673 -14.70652 -14.49483 -14.37121 -14.08477 -13.89696 -13.80713 -13.52504 -13.25768 -12.96262 -12.89411 -12.78061 -12.68509 -12.49986 -12.30521 -12.02533 -11.88296 -11.81339 -11.70975 -11.49482 -11.27727 -10.95799 -10.83773 -10.67066 -10.38935 -10.21741 -9.37388 -8.34725 -6.39652 -0.56030 0.26625 1.18768 1.31425 1.35475 1.44031 1.76390 2.22161 2.30212 2.72718 2.82511 2.99481 3.38138 3.63978 3.86268 3.92708 3.95888 4.03274 4.03914 4.05546 4.09691 4.19925 4.28740 4.45373 4.51690 4.57712 4.69838 4.75193 4.76558 4.78663 4.85393 4.90806 4.98052 5.00122 5.05733 5.08197 5.09051 5.14604 5.27004 5.40362 5.46131 5.49384 5.63921 5.65793 6.16826 6.23757 6.61441 6.69332 6.88276 7.20437 7.39923 8.82246 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.013878 B = 0.003219 C = 0.002769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2017.165554 B = 8696.818080 C =10111.231387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.111 4.111 3 C -0.146 4.146 4 C 0.107 3.893 5 N -0.597 5.597 6 C 0.227 3.773 7 C -0.536 4.536 8 H 0.029 0.971 9 C 0.013 3.987 10 N -0.944 5.944 11 Si 0.947 3.053 12 H -0.275 1.275 13 H -0.274 1.274 14 H -0.240 1.240 15 C 0.505 3.495 16 O -0.591 6.591 17 C -0.129 4.129 18 C -0.131 4.131 19 C 0.422 3.578 20 O -0.461 6.461 21 C 0.016 3.984 22 C -0.120 4.120 23 C -0.084 4.084 24 C -0.129 4.129 25 C 0.081 3.919 26 N -0.475 5.475 27 H 0.068 0.932 28 H 0.069 0.931 29 H 0.055 0.945 30 H 0.059 0.941 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.032 0.968 34 H 0.069 0.931 35 H 0.095 0.905 36 H 0.045 0.955 37 H 0.019 0.981 38 H 0.269 0.731 39 H 0.100 0.900 40 H 0.122 0.878 41 H 0.106 0.894 42 H 0.093 0.907 43 H 0.151 0.849 44 H 0.177 0.823 45 H 0.180 0.820 46 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.798 25.941 6.078 27.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.131 4.131 3 C -0.203 4.203 4 C -0.015 4.015 5 N -0.327 5.327 6 C 0.104 3.896 7 C -0.575 4.575 8 H 0.047 0.953 9 C -0.185 4.185 10 N -0.585 5.585 11 Si 0.769 3.231 12 H -0.201 1.201 13 H -0.199 1.199 14 H -0.164 1.164 15 C 0.294 3.706 16 O -0.472 6.472 17 C -0.168 4.168 18 C -0.169 4.169 19 C 0.300 3.700 20 O -0.334 6.334 21 C -0.119 4.119 22 C -0.140 4.140 23 C -0.109 4.109 24 C -0.149 4.149 25 C -0.079 4.079 26 N -0.187 5.187 27 H 0.087 0.913 28 H 0.088 0.912 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.091 0.909 32 H 0.088 0.912 33 H 0.051 0.949 34 H 0.088 0.912 35 H 0.113 0.887 36 H 0.063 0.937 37 H 0.037 0.963 38 H 0.078 0.922 39 H 0.118 0.882 40 H 0.140 0.860 41 H 0.124 0.876 42 H 0.112 0.888 43 H 0.169 0.831 44 H 0.194 0.806 45 H 0.197 0.803 46 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -4.486 25.101 5.482 26.081 hybrid contribution 0.409 -0.452 0.031 0.610 sum -4.078 24.649 5.513 25.585 Atomic orbital electron populations 1.21724 0.92381 1.02331 1.03016 1.21502 0.97535 0.96542 0.97478 1.21955 0.99888 0.95592 1.02901 1.21895 0.78450 1.01622 0.99541 1.47928 1.07488 1.26426 1.50820 1.19261 0.93990 0.84477 0.91841 1.21561 1.41297 0.97677 0.96958 0.95261 1.25825 0.94832 0.94872 1.03016 1.70041 1.45748 1.04522 1.38148 0.85733 0.79527 0.78316 0.79499 1.20084 1.19860 1.16372 1.21064 0.86654 0.82648 0.80232 1.90625 1.16628 1.75085 1.64843 1.21712 0.99165 0.96579 0.99337 1.21503 0.98638 0.97006 0.99746 1.22368 0.87710 0.81759 0.78188 1.90489 1.16586 1.67607 1.58760 1.21573 0.91436 0.98537 1.00319 1.22500 1.02900 0.93952 0.94673 1.22094 0.93624 0.98142 0.97087 1.22920 0.96741 0.97880 0.97342 1.23459 1.01100 0.91094 0.92296 1.67635 1.04171 1.25840 1.21030 0.91317 0.91184 0.92579 0.92279 0.90908 0.91179 0.94894 0.91232 0.88719 0.93680 0.96292 0.92233 0.88198 0.86035 0.87621 0.88845 0.83130 0.80557 0.80254 0.79849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.70 9.19 71.98 0.66 -2.04 16 2 C -0.11 -2.90 3.11 -10.79 -0.03 -2.94 16 3 C -0.15 -3.48 7.59 71.98 0.55 -2.93 16 4 C 0.11 3.49 4.89 86.38 0.42 3.91 16 5 N -0.60 -25.43 2.26 -826.19 -1.87 -27.30 16 6 C 0.23 11.47 4.29 85.63 0.37 11.84 16 7 C -0.54 -32.42 9.94 25.60 0.25 -32.17 16 8 H 0.03 1.97 8.06 -2.91 -0.02 1.95 16 9 C 0.01 0.76 5.47 84.66 0.46 1.22 16 10 N -0.94 -60.74 13.96 21.45 0.30 -60.44 16 11 Si 0.95 45.59 27.47 68.60 1.88 47.48 16 12 H -0.28 -13.29 7.11 99.48 0.71 -12.59 16 13 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 14 H -0.24 -10.50 6.54 99.48 0.65 -9.85 16 15 C 0.50 21.48 6.45 87.66 0.57 22.04 16 16 O -0.59 -30.29 15.54 -3.02 -0.05 -30.34 16 17 C -0.13 -4.10 3.34 29.85 0.10 -4.00 16 18 C -0.13 -4.04 4.49 29.85 0.13 -3.90 16 19 C 0.42 11.44 7.13 28.14 0.20 11.64 16 20 O -0.46 -13.07 15.95 -2.82 -0.05 -13.11 16 21 C 0.02 0.37 6.73 41.76 0.28 0.65 16 22 C -0.12 -2.09 9.64 22.66 0.22 -1.87 16 23 C -0.08 -0.89 10.17 22.44 0.23 -0.66 16 24 C -0.13 -1.24 10.12 22.47 0.23 -1.01 16 25 C 0.08 1.27 11.18 84.85 0.95 2.22 16 26 N -0.47 -11.35 9.79 -185.16 -1.81 -13.16 16 27 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 28 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.06 1.74 8.01 -2.39 -0.02 1.72 16 31 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.07 1.49 6.49 -2.39 -0.02 1.47 16 33 H 0.03 0.93 6.87 -2.39 -0.02 0.91 16 34 H 0.07 2.42 8.12 -2.39 -0.02 2.40 16 35 H 0.09 2.64 6.10 -2.39 -0.01 2.62 16 36 H 0.05 2.12 7.00 -2.39 -0.02 2.11 16 37 H 0.02 1.03 6.78 -2.39 -0.02 1.02 16 38 H 0.27 16.02 8.31 -92.71 -0.77 15.25 16 39 H 0.10 3.04 7.32 -2.38 -0.02 3.02 16 40 H 0.12 3.31 4.75 -2.39 -0.01 3.30 16 41 H 0.11 3.33 8.04 -2.38 -0.02 3.31 16 42 H 0.09 3.19 8.14 -2.39 -0.02 3.17 16 43 H 0.15 2.36 7.64 -2.91 -0.02 2.34 16 44 H 0.18 0.56 8.06 -2.91 -0.02 0.54 16 45 H 0.18 0.28 8.06 -2.91 -0.02 0.26 16 46 H 0.18 1.88 8.06 -2.91 -0.02 1.86 16 Total: -1.00 -81.97 377.81 4.91 -77.06 By element: Atomic # 1 Polarization: 16.90 SS G_CDS: 0.92 Total: 17.81 kcal Atomic # 6 Polarization: -3.58 SS G_CDS: 5.58 Total: 2.00 kcal Atomic # 7 Polarization: -97.52 SS G_CDS: -3.38 Total: -100.90 kcal Atomic # 8 Polarization: -43.36 SS G_CDS: -0.09 Total: -43.45 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 1.88 Total: 47.48 kcal Total: -81.97 4.91 -77.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771154535.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.832 kcal (2) G-P(sol) polarization free energy of solvation -81.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds