Wall clock time and date at job start Tue Mar 31 2020 12:16:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52999 * 109.47354 * 2 1 4 4 C 1.53004 * 109.47061 * 119.99983 * 2 1 3 5 5 H 1.08998 * 112.78154 * 189.49234 * 4 2 1 6 6 C 1.53762 * 113.54874 * 320.34496 * 4 2 1 7 7 C 1.53500 * 83.25545 * 140.98724 * 6 4 2 8 8 N 1.47065 * 113.46823 * 58.70737 * 4 2 1 9 9 C 1.34768 * 136.05992 * 38.13217 * 8 4 2 10 10 O 1.21585 * 120.00004 * 354.59020 * 9 8 4 11 11 N 1.34779 * 120.00258 * 174.58020 * 9 8 4 12 12 C 1.46499 * 119.99864 * 180.27725 * 11 9 8 13 13 C 1.50701 * 109.46865 * 179.72947 * 12 11 9 14 14 C 1.38306 * 119.92975 * 269.72964 * 13 12 11 15 15 C 1.38102 * 120.06814 * 179.72882 * 14 13 12 16 16 C 1.38877 * 119.93065 * 0.56142 * 15 14 13 17 17 O 1.35746 * 120.07156 * 179.68362 * 16 15 14 18 18 C 1.34831 * 117.00224 * 174.27233 * 17 16 15 19 19 H 1.07998 * 119.99961 * 5.09105 * 18 17 16 20 20 C 1.38652 * 120.00232 * 185.09369 * 18 17 16 21 21 N 1.31553 * 120.00305 * 179.97438 * 20 18 17 22 22 Si 1.86799 * 119.99975 * 0.02562 * 20 18 17 23 23 H 1.48503 * 109.47453 * 89.99658 * 22 20 18 24 24 H 1.48498 * 109.47265 * 210.00024 * 22 20 18 25 25 H 1.48500 * 109.47317 * 329.99888 * 22 20 18 26 26 C 1.38887 * 119.86132 * 359.71221 * 16 15 14 27 27 C 1.38091 * 119.93125 * 359.97438 * 26 16 15 28 28 H 1.08998 * 109.47528 * 306.63157 * 1 2 3 29 29 H 1.09001 * 109.46966 * 66.63311 * 1 2 3 30 30 H 1.09005 * 109.47360 * 186.62997 * 1 2 3 31 31 H 1.09004 * 109.47654 * 239.99468 * 2 1 3 32 32 H 1.09000 * 109.47289 * 179.97438 * 3 2 1 33 33 H 1.09004 * 109.46680 * 299.99671 * 3 2 1 34 34 H 1.09001 * 109.47375 * 59.99669 * 3 2 1 35 35 H 1.09003 * 114.39388 * 27.42737 * 6 4 2 36 36 H 1.08995 * 114.08705 * 254.53241 * 6 4 2 37 37 H 1.09003 * 113.46625 * 218.98075 * 7 6 4 38 38 H 1.09001 * 113.51919 * 88.55081 * 7 6 4 39 39 H 0.97003 * 120.00094 * 0.02562 * 11 9 8 40 40 H 1.08995 * 109.47602 * 299.72738 * 12 11 9 41 41 H 1.08998 * 109.47300 * 59.73586 * 12 11 9 42 42 H 1.08003 * 119.96551 * 359.97380 * 14 13 12 43 43 H 1.07995 * 120.03700 * 180.27539 * 15 14 13 44 44 H 0.97001 * 120.00526 * 179.97438 * 21 20 18 45 45 H 1.08004 * 120.03256 * 179.97438 * 26 16 15 46 46 H 1.08004 * 119.96932 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2493 5 1 3.1151 -0.6115 1.3906 6 6 1.2215 -0.4127 2.5139 7 6 1.4456 -1.9034 2.8034 8 7 1.5745 -2.1124 1.3534 9 6 1.3643 -3.1320 0.4975 10 8 1.4842 -2.9555 -0.6995 11 7 1.0213 -4.3474 0.9684 12 6 0.7987 -5.4572 0.0383 13 6 0.4360 -6.6974 0.8138 14 6 1.4293 -7.5618 1.2369 15 6 1.1006 -8.6963 1.9525 16 6 -0.2299 -8.9747 2.2372 17 8 -0.5567 -10.0924 2.9349 18 6 -1.8516 -10.2421 3.2796 19 1 -2.5887 -9.5342 2.9304 20 6 -2.2370 -11.3049 4.0824 21 7 -3.5003 -11.4507 4.4190 22 14 -0.9620 -12.5289 4.6871 23 1 -0.4118 -12.0689 5.9875 24 1 -1.5971 -13.8598 4.8612 25 1 0.1366 -12.6310 3.6932 26 6 -1.2255 -8.1076 1.8060 27 6 -0.8898 -6.9715 1.0964 28 1 -0.3634 0.6131 0.8247 29 1 -0.3633 0.4076 -0.9434 30 1 -0.3634 -1.0208 0.1187 31 1 1.8934 -0.5139 -0.8899 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9563 -0.8901 34 1 1.6766 1.9564 0.8899 35 1 0.1820 -0.1457 2.3234 36 1 1.7198 0.2583 3.2135 37 1 0.5759 -2.3968 3.2375 38 1 2.3638 -2.1063 3.3545 39 1 0.9254 -4.4882 1.9233 40 1 -0.0140 -5.2036 -0.6422 41 1 1.7083 -5.6396 -0.5340 42 1 2.4634 -7.3474 1.0107 43 1 1.8769 -9.3686 2.2865 44 1 -3.7700 -12.1944 4.9804 45 1 -2.2611 -8.3217 2.0256 46 1 -1.6635 -6.2966 0.7612 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776043069.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:41 Heat of formation + Delta-G solvation = 2.048122 kcal Electronic energy + Delta-G solvation = -25938.713710 eV Core-core repulsion = 22216.456892 eV Total energy + Delta-G solvation = -3722.256818 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.92980 -39.38971 -38.43110 -36.94122 -34.77775 -34.17987 -32.47986 -30.64862 -30.34714 -29.06155 -27.41174 -26.24984 -25.73692 -24.41970 -22.56874 -22.18014 -20.90724 -20.55335 -19.32016 -17.99412 -17.78562 -17.33146 -16.39773 -16.33135 -15.29381 -15.05344 -14.91082 -14.60511 -14.26111 -14.09061 -13.88805 -13.84693 -13.47003 -13.27565 -13.21578 -12.80522 -12.68067 -12.62978 -12.53993 -12.27915 -11.97961 -11.83266 -11.64666 -11.47322 -11.19943 -11.06373 -10.95877 -10.84410 -10.77317 -10.48489 -10.23069 -9.94072 -9.49015 -9.09069 -8.95998 -8.60547 -8.38003 -7.48687 -6.50609 -4.17594 1.89392 2.02519 2.55570 3.16180 3.19872 3.25467 3.34175 3.88526 4.09997 4.15987 4.44099 4.55829 4.69726 4.70961 4.74372 4.86311 4.95097 5.01337 5.13422 5.18324 5.20432 5.34890 5.37306 5.38068 5.45628 5.54134 5.57078 5.66911 5.69611 5.74837 5.88023 5.90760 5.94645 6.02907 6.16211 6.20822 6.25179 6.45434 6.61304 6.67796 6.89573 7.12780 7.18257 7.23873 7.49516 7.70096 7.93601 8.06995 8.66301 8.83953 9.44747 10.56541 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.027037 B = 0.002234 C = 0.002198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.356629 B =12527.956824 C =12736.995653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.103 4.103 3 C -0.143 4.143 4 C 0.159 3.841 5 H 0.087 0.913 6 C -0.156 4.156 7 C 0.097 3.903 8 N -0.664 5.664 9 C 0.732 3.268 10 O -0.590 6.590 11 N -0.737 5.737 12 C 0.197 3.803 13 C -0.205 4.205 14 C -0.055 4.055 15 C -0.195 4.195 16 C 0.167 3.833 17 O -0.213 6.213 18 C -0.391 4.391 19 H 0.108 0.892 20 C 0.064 3.936 21 N -0.875 5.875 22 Si 0.906 3.094 23 H -0.273 1.273 24 H -0.281 1.281 25 H -0.259 1.259 26 C -0.224 4.224 27 C -0.052 4.052 28 H 0.053 0.947 29 H 0.050 0.950 30 H 0.057 0.943 31 H 0.086 0.914 32 H 0.054 0.946 33 H 0.056 0.944 34 H 0.055 0.945 35 H 0.101 0.899 36 H 0.087 0.913 37 H 0.076 0.924 38 H 0.081 0.919 39 H 0.396 0.604 40 H 0.065 0.935 41 H 0.065 0.935 42 H 0.114 0.886 43 H 0.118 0.882 44 H 0.281 0.719 45 H 0.134 0.866 46 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.212 22.026 -2.966 24.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.122 4.122 3 C -0.201 4.201 4 C 0.055 3.945 5 H 0.105 0.895 6 C -0.194 4.194 7 C -0.026 4.026 8 N -0.405 5.405 9 C 0.435 3.565 10 O -0.469 6.469 11 N -0.391 5.391 12 C 0.075 3.925 13 C -0.206 4.206 14 C -0.074 4.074 15 C -0.215 4.215 16 C 0.114 3.886 17 O -0.117 6.117 18 C -0.467 4.467 19 H 0.125 0.875 20 C -0.140 4.140 21 N -0.513 5.513 22 Si 0.731 3.269 23 H -0.198 1.198 24 H -0.207 1.207 25 H -0.183 1.183 26 C -0.243 4.243 27 C -0.070 4.070 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.076 0.924 31 H 0.104 0.896 32 H 0.073 0.927 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.120 0.880 36 H 0.105 0.895 37 H 0.095 0.905 38 H 0.099 0.901 39 H 0.230 0.770 40 H 0.083 0.917 41 H 0.083 0.917 42 H 0.132 0.868 43 H 0.136 0.864 44 H 0.091 0.909 45 H 0.152 0.848 46 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 10.203 21.577 -3.832 24.173 hybrid contribution 0.235 -0.810 0.862 1.206 sum 10.438 20.767 -2.971 23.431 Atomic orbital electron populations 1.21793 0.94804 1.01960 1.01016 1.21258 0.96627 0.95771 0.98541 1.21768 1.00826 0.95556 1.01919 1.22628 0.98093 0.78779 0.95003 0.89526 1.23683 1.02289 0.96118 0.97321 1.22888 1.01751 0.95247 0.82758 1.48845 1.71105 1.12490 1.08041 1.15354 0.77914 0.79155 0.84078 1.90896 1.60031 1.82749 1.13222 1.45455 1.74718 1.08241 1.10725 1.19836 1.00688 0.82074 0.89937 1.19305 0.93777 0.98521 1.09010 1.20542 0.97933 0.93187 0.95764 1.20212 0.93779 1.00313 1.07169 1.19181 0.92944 0.85924 0.90600 1.83573 1.30021 1.35026 1.63111 1.20784 0.80436 1.13906 1.31550 0.87508 1.24489 0.96609 0.97441 0.95434 1.69640 1.15114 1.31291 1.35212 0.86172 0.81293 0.79535 0.79863 1.19818 1.20682 1.18327 1.21279 1.00473 0.97095 1.05472 1.20704 0.94942 0.95770 0.95620 0.92806 0.93040 0.92441 0.89565 0.92732 0.92444 0.92578 0.88026 0.89481 0.90528 0.90098 0.77020 0.91703 0.91710 0.86797 0.86377 0.90909 0.84797 0.87118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.30 8.18 37.15 0.30 -0.99 16 2 C -0.10 -0.94 2.64 -90.62 -0.24 -1.18 16 3 C -0.14 -0.94 9.17 37.16 0.34 -0.60 16 4 C 0.16 1.34 3.84 -72.25 -0.28 1.07 16 5 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 6 C -0.16 -0.94 7.67 -26.08 -0.20 -1.14 16 7 C 0.10 0.71 8.28 -8.50 -0.07 0.64 16 8 N -0.66 -7.16 2.98 -183.02 -0.55 -7.71 16 9 C 0.73 10.43 8.22 -86.92 -0.71 9.71 16 10 O -0.59 -10.44 15.88 5.29 0.08 -10.36 16 11 N -0.74 -9.76 5.55 -66.42 -0.37 -10.13 16 12 C 0.20 2.81 5.80 -5.19 -0.03 2.78 16 13 C -0.20 -3.21 5.25 -104.57 -0.55 -3.76 16 14 C -0.06 -0.89 9.69 -39.61 -0.38 -1.27 16 15 C -0.20 -3.67 9.99 -39.39 -0.39 -4.06 16 16 C 0.17 3.67 6.65 -39.10 -0.26 3.41 16 17 O -0.21 -5.43 8.59 0.06 0.00 -5.43 16 18 C -0.39 -10.70 9.95 30.89 0.31 -10.40 16 19 H 0.11 2.98 5.44 -52.49 -0.29 2.69 16 20 C 0.06 1.76 5.49 -17.52 -0.10 1.66 16 21 N -0.88 -24.69 13.96 55.48 0.77 -23.91 16 22 Si 0.91 21.11 28.62 -169.99 -4.86 16.25 16 23 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 24 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 25 H -0.26 -6.07 7.11 56.52 0.40 -5.67 16 26 C -0.22 -4.59 9.17 -39.40 -0.36 -4.95 16 27 C -0.05 -0.88 9.69 -39.61 -0.38 -1.27 16 28 H 0.05 0.40 6.53 -51.93 -0.34 0.06 16 29 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.68 7.14 -51.93 -0.37 0.31 16 31 H 0.09 1.05 7.32 -51.93 -0.38 0.67 16 32 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.10 0.64 5.76 -51.93 -0.30 0.34 16 36 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.40 4.77 8.19 -40.82 -0.33 4.44 16 40 H 0.06 0.95 8.08 -51.93 -0.42 0.53 16 41 H 0.06 0.93 8.08 -51.93 -0.42 0.51 16 42 H 0.11 1.55 8.06 -52.48 -0.42 1.13 16 43 H 0.12 2.07 8.06 -52.49 -0.42 1.65 16 44 H 0.28 7.30 8.31 -40.82 -0.34 6.97 16 45 H 0.13 2.91 5.64 -52.48 -0.30 2.61 16 46 H 0.11 1.68 8.06 -52.48 -0.42 1.26 16 LS Contribution 376.38 15.07 5.67 5.67 Total: -1.00 -30.90 376.38 -9.19 -40.09 By element: Atomic # 1 Polarization: 12.81 SS G_CDS: -6.93 Total: 5.88 kcal Atomic # 6 Polarization: -7.34 SS G_CDS: -3.01 Total: -10.35 kcal Atomic # 7 Polarization: -41.61 SS G_CDS: -0.14 Total: -41.75 kcal Atomic # 8 Polarization: -15.88 SS G_CDS: 0.08 Total: -15.79 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -4.86 Total: 16.25 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -30.90 -9.19 -40.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776043069.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.137 kcal (2) G-P(sol) polarization free energy of solvation -30.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.089 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds