Wall clock time and date at job start Tue Mar 31 2020 12:16:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52999 * 109.47354 * 2 1 4 4 C 1.53004 * 109.47061 * 119.99983 * 2 1 3 5 5 H 1.08998 * 112.78154 * 189.49234 * 4 2 1 6 6 C 1.53762 * 113.54874 * 320.34496 * 4 2 1 7 7 C 1.53500 * 83.25545 * 140.98724 * 6 4 2 8 8 N 1.47065 * 113.46823 * 58.70737 * 4 2 1 9 9 C 1.34768 * 136.05992 * 38.13217 * 8 4 2 10 10 O 1.21585 * 120.00004 * 354.59020 * 9 8 4 11 11 N 1.34779 * 120.00258 * 174.58020 * 9 8 4 12 12 C 1.46499 * 119.99864 * 180.27725 * 11 9 8 13 13 C 1.50701 * 109.46865 * 179.72947 * 12 11 9 14 14 C 1.38306 * 119.92975 * 269.72964 * 13 12 11 15 15 C 1.38102 * 120.06814 * 179.72882 * 14 13 12 16 16 C 1.38877 * 119.93065 * 0.56142 * 15 14 13 17 17 O 1.35746 * 120.07156 * 179.68362 * 16 15 14 18 18 C 1.34831 * 117.00224 * 174.27233 * 17 16 15 19 19 H 1.07998 * 119.99961 * 5.09105 * 18 17 16 20 20 C 1.38652 * 120.00232 * 185.09369 * 18 17 16 21 21 N 1.31553 * 120.00305 * 179.97438 * 20 18 17 22 22 Si 1.86799 * 119.99975 * 0.02562 * 20 18 17 23 23 H 1.48503 * 109.47453 * 89.99658 * 22 20 18 24 24 H 1.48498 * 109.47265 * 210.00024 * 22 20 18 25 25 H 1.48500 * 109.47317 * 329.99888 * 22 20 18 26 26 C 1.38887 * 119.86132 * 359.71221 * 16 15 14 27 27 C 1.38091 * 119.93125 * 359.97438 * 26 16 15 28 28 H 1.08998 * 109.47528 * 306.63157 * 1 2 3 29 29 H 1.09001 * 109.46966 * 66.63311 * 1 2 3 30 30 H 1.09005 * 109.47360 * 186.62997 * 1 2 3 31 31 H 1.09004 * 109.47654 * 239.99468 * 2 1 3 32 32 H 1.09000 * 109.47289 * 179.97438 * 3 2 1 33 33 H 1.09004 * 109.46680 * 299.99671 * 3 2 1 34 34 H 1.09001 * 109.47375 * 59.99669 * 3 2 1 35 35 H 1.09003 * 114.39388 * 27.42737 * 6 4 2 36 36 H 1.08995 * 114.08705 * 254.53241 * 6 4 2 37 37 H 1.09003 * 113.46625 * 218.98075 * 7 6 4 38 38 H 1.09001 * 113.51919 * 88.55081 * 7 6 4 39 39 H 0.97003 * 120.00094 * 0.02562 * 11 9 8 40 40 H 1.08995 * 109.47602 * 299.72738 * 12 11 9 41 41 H 1.08998 * 109.47300 * 59.73586 * 12 11 9 42 42 H 1.08003 * 119.96551 * 359.97380 * 14 13 12 43 43 H 1.07995 * 120.03700 * 180.27539 * 15 14 13 44 44 H 0.97001 * 120.00526 * 179.97438 * 21 20 18 45 45 H 1.08004 * 120.03256 * 179.97438 * 26 16 15 46 46 H 1.08004 * 119.96932 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2493 5 1 3.1151 -0.6115 1.3906 6 6 1.2215 -0.4127 2.5139 7 6 1.4456 -1.9034 2.8034 8 7 1.5745 -2.1124 1.3534 9 6 1.3643 -3.1320 0.4975 10 8 1.4842 -2.9555 -0.6995 11 7 1.0213 -4.3474 0.9684 12 6 0.7987 -5.4572 0.0383 13 6 0.4360 -6.6974 0.8138 14 6 1.4293 -7.5618 1.2369 15 6 1.1006 -8.6963 1.9525 16 6 -0.2299 -8.9747 2.2372 17 8 -0.5567 -10.0924 2.9349 18 6 -1.8516 -10.2421 3.2796 19 1 -2.5887 -9.5342 2.9304 20 6 -2.2370 -11.3049 4.0824 21 7 -3.5003 -11.4507 4.4190 22 14 -0.9620 -12.5289 4.6871 23 1 -0.4118 -12.0689 5.9875 24 1 -1.5971 -13.8598 4.8612 25 1 0.1366 -12.6310 3.6932 26 6 -1.2255 -8.1076 1.8060 27 6 -0.8898 -6.9715 1.0964 28 1 -0.3634 0.6131 0.8247 29 1 -0.3633 0.4076 -0.9434 30 1 -0.3634 -1.0208 0.1187 31 1 1.8934 -0.5139 -0.8899 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9563 -0.8901 34 1 1.6766 1.9564 0.8899 35 1 0.1820 -0.1457 2.3234 36 1 1.7198 0.2583 3.2135 37 1 0.5759 -2.3968 3.2375 38 1 2.3638 -2.1063 3.3545 39 1 0.9254 -4.4882 1.9233 40 1 -0.0140 -5.2036 -0.6422 41 1 1.7083 -5.6396 -0.5340 42 1 2.4634 -7.3474 1.0107 43 1 1.8769 -9.3686 2.2865 44 1 -3.7700 -12.1944 4.9804 45 1 -2.2611 -8.3217 2.0256 46 1 -1.6635 -6.2966 0.7612 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776043069.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:39 Heat of formation + Delta-G solvation = -16.414167 kcal Electronic energy + Delta-G solvation = -25939.514295 eV Core-core repulsion = 22216.456892 eV Total energy + Delta-G solvation = -3723.057403 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.95 seconds Orbital eigenvalues (eV) -41.74530 -40.97251 -39.54148 -38.48061 -35.73169 -35.20071 -34.44064 -31.96888 -31.78851 -30.09210 -28.06146 -27.71000 -26.69848 -25.81779 -23.74308 -23.30747 -22.13724 -21.61043 -20.29773 -19.83202 -19.14506 -18.52817 -17.40812 -17.11262 -16.73615 -16.40879 -16.10839 -15.76877 -15.69422 -15.53284 -15.35983 -14.92844 -14.56608 -14.46600 -14.31612 -14.08935 -13.99689 -13.86147 -13.32997 -13.24826 -13.12494 -13.08413 -12.59036 -12.49032 -12.48690 -12.34468 -12.23640 -11.95148 -11.88506 -11.74627 -11.32435 -11.23853 -10.96423 -10.88062 -10.20233 -9.86690 -9.45886 -9.12731 -8.51703 -6.24931 0.44017 0.51874 1.32003 1.34960 1.51766 1.61657 2.19785 2.26889 2.69506 2.95658 3.07552 3.19219 3.50385 3.81379 3.90966 3.98411 4.04141 4.08713 4.11289 4.24388 4.39080 4.41806 4.51403 4.57181 4.64212 4.66477 4.73224 4.77960 4.79809 4.85986 4.92779 5.00079 5.06383 5.11201 5.19294 5.28407 5.30730 5.31518 5.45354 5.50385 5.51487 5.53963 5.68466 5.76644 5.86062 6.16468 6.30172 6.82205 7.09896 7.54588 7.61578 8.59479 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.027037 B = 0.002234 C = 0.002198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.356629 B =12527.956824 C =12736.995653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.102 4.102 3 C -0.136 4.136 4 C 0.149 3.851 5 H 0.100 0.900 6 C -0.137 4.137 7 C 0.094 3.906 8 N -0.671 5.671 9 C 0.725 3.275 10 O -0.633 6.633 11 N -0.732 5.732 12 C 0.204 3.796 13 C -0.173 4.173 14 C -0.044 4.044 15 C -0.190 4.190 16 C 0.130 3.870 17 O -0.241 6.241 18 C -0.400 4.400 19 H 0.083 0.917 20 C 0.010 3.990 21 N -0.921 5.921 22 Si 0.971 3.029 23 H -0.264 1.264 24 H -0.269 1.269 25 H -0.262 1.262 26 C -0.237 4.237 27 C -0.049 4.049 28 H 0.077 0.923 29 H 0.045 0.955 30 H 0.027 0.973 31 H 0.047 0.953 32 H 0.060 0.940 33 H 0.054 0.946 34 H 0.075 0.925 35 H 0.099 0.901 36 H 0.120 0.880 37 H 0.078 0.922 38 H 0.101 0.899 39 H 0.404 0.596 40 H 0.061 0.939 41 H 0.071 0.929 42 H 0.152 0.848 43 H 0.133 0.867 44 H 0.285 0.715 45 H 0.110 0.890 46 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.885 24.399 -2.316 27.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.121 4.121 3 C -0.194 4.194 4 C 0.046 3.954 5 H 0.118 0.882 6 C -0.175 4.175 7 C -0.028 4.028 8 N -0.410 5.410 9 C 0.428 3.572 10 O -0.515 6.515 11 N -0.387 5.387 12 C 0.081 3.919 13 C -0.174 4.174 14 C -0.062 4.062 15 C -0.210 4.210 16 C 0.081 3.919 17 O -0.148 6.148 18 C -0.476 4.476 19 H 0.100 0.900 20 C -0.188 4.188 21 N -0.561 5.561 22 Si 0.793 3.207 23 H -0.189 1.189 24 H -0.194 1.194 25 H -0.187 1.187 26 C -0.256 4.256 27 C -0.068 4.068 28 H 0.095 0.905 29 H 0.064 0.936 30 H 0.047 0.953 31 H 0.066 0.934 32 H 0.079 0.921 33 H 0.073 0.927 34 H 0.094 0.906 35 H 0.117 0.883 36 H 0.138 0.862 37 H 0.097 0.903 38 H 0.119 0.881 39 H 0.238 0.762 40 H 0.080 0.920 41 H 0.089 0.911 42 H 0.170 0.830 43 H 0.151 0.849 44 H 0.095 0.905 45 H 0.128 0.872 46 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 12.897 24.014 -3.161 27.441 hybrid contribution -0.476 -1.186 0.459 1.358 sum 12.422 22.828 -2.702 26.129 Atomic orbital electron populations 1.21750 0.95169 1.00454 1.01695 1.21209 0.96280 0.97215 0.97439 1.21716 1.01228 0.93662 1.02775 1.22949 0.99296 0.77404 0.95762 0.88226 1.23631 1.01985 0.95788 0.96054 1.23172 1.02868 0.96123 0.80673 1.49026 1.69995 1.12437 1.09552 1.15516 0.77888 0.79772 0.83986 1.90866 1.61833 1.83511 1.15246 1.45225 1.74785 1.07898 1.10815 1.19705 1.00919 0.81534 0.89777 1.19524 0.93003 0.98475 1.06441 1.20926 0.99815 0.91587 0.93919 1.20508 0.92551 1.01206 1.06687 1.19722 0.94723 0.86033 0.91452 1.83522 1.28499 1.37192 1.65566 1.20705 0.81229 1.13794 1.31901 0.89988 1.25295 0.98544 0.99256 0.95754 1.69724 1.16774 1.32624 1.36987 0.85213 0.78615 0.77612 0.79266 1.18918 1.19371 1.18660 1.21256 0.99319 0.98406 1.06622 1.20889 0.96426 0.94777 0.94710 0.90470 0.93607 0.95336 0.93448 0.92055 0.92682 0.90622 0.88286 0.86192 0.90314 0.88148 0.76155 0.92038 0.91061 0.83042 0.84945 0.90517 0.87176 0.85110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.38 8.18 71.98 0.59 -1.79 16 2 C -0.10 -1.75 2.64 -10.79 -0.03 -1.77 16 3 C -0.14 -1.47 9.17 71.98 0.66 -0.81 16 4 C 0.15 2.15 3.84 41.88 0.16 2.31 16 5 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 6 C -0.14 -1.12 7.67 31.02 0.24 -0.89 16 7 C 0.09 1.06 8.28 83.18 0.69 1.75 16 8 N -0.67 -13.14 2.98 -851.23 -2.54 -15.68 16 9 C 0.73 19.75 8.22 179.06 1.47 21.22 16 10 O -0.63 -22.28 15.88 -3.98 -0.06 -22.34 16 11 N -0.73 -17.82 5.55 -482.31 -2.68 -20.50 16 12 C 0.20 5.31 5.80 85.63 0.50 5.81 16 13 C -0.17 -4.99 5.25 -19.83 -0.10 -5.10 16 14 C -0.04 -1.27 9.69 22.25 0.22 -1.05 16 15 C -0.19 -6.81 9.99 22.39 0.22 -6.59 16 16 C 0.13 5.83 6.65 22.58 0.15 5.98 16 17 O -0.24 -12.66 8.59 -22.71 -0.19 -12.86 16 18 C -0.40 -23.01 9.95 67.92 0.68 -22.34 16 19 H 0.08 4.94 5.44 -2.91 -0.02 4.93 16 20 C 0.01 0.58 5.49 84.83 0.47 1.05 16 21 N -0.92 -54.11 13.96 21.61 0.30 -53.80 16 22 Si 0.97 44.41 28.62 68.60 1.96 46.37 16 23 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 24 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 25 H -0.26 -11.96 7.11 99.48 0.71 -11.26 16 26 C -0.24 -9.96 9.17 22.39 0.21 -9.76 16 27 C -0.05 -1.64 9.69 22.25 0.22 -1.43 16 28 H 0.08 0.98 6.53 -2.39 -0.02 0.96 16 29 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.03 0.66 7.14 -2.38 -0.02 0.65 16 31 H 0.05 1.18 7.32 -2.39 -0.02 1.17 16 32 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.05 0.63 8.14 -2.38 -0.02 0.61 16 34 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 35 H 0.10 0.91 5.76 -2.39 -0.01 0.89 16 36 H 0.12 0.30 8.14 -2.39 -0.02 0.28 16 37 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 39 H 0.40 8.65 8.19 -92.71 -0.76 7.89 16 40 H 0.06 1.69 8.08 -2.39 -0.02 1.67 16 41 H 0.07 1.84 8.08 -2.39 -0.02 1.82 16 42 H 0.15 3.35 8.06 -2.91 -0.02 3.32 16 43 H 0.13 4.34 8.06 -2.91 -0.02 4.32 16 44 H 0.29 15.36 8.31 -92.71 -0.77 14.59 16 45 H 0.11 5.14 5.64 -2.91 -0.02 5.13 16 46 H 0.13 3.81 8.06 -2.91 -0.02 3.79 16 Total: -1.00 -71.80 376.38 3.34 -68.46 By element: Atomic # 1 Polarization: 23.53 SS G_CDS: 0.23 Total: 23.76 kcal Atomic # 6 Polarization: -19.72 SS G_CDS: 6.32 Total: -13.40 kcal Atomic # 7 Polarization: -85.07 SS G_CDS: -4.92 Total: -89.98 kcal Atomic # 8 Polarization: -34.94 SS G_CDS: -0.26 Total: -35.20 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 1.96 Total: 46.37 kcal Total: -71.80 3.34 -68.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776043069.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.047 kcal (2) G-P(sol) polarization free energy of solvation -71.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.96 seconds