Wall clock time and date at job start Tue Mar 31 2020 12:29:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.46876 * 2 1 4 4 C 1.53007 * 109.46997 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.46959 * 179.97438 * 4 3 2 6 6 C 1.46499 * 120.00044 * 269.99521 * 5 4 3 7 7 C 1.50695 * 109.47139 * 270.00517 * 6 5 4 8 8 N 1.34777 * 120.00154 * 180.02562 * 7 6 5 9 9 O 1.21283 * 120.00493 * 359.97438 * 7 6 5 10 10 C 1.34776 * 120.00015 * 89.99817 * 5 4 3 11 11 O 1.21287 * 119.99789 * 359.97438 * 10 5 4 12 12 C 1.50696 * 120.00043 * 179.97438 * 10 5 4 13 13 C 1.50705 * 109.47248 * 179.97438 * 12 10 5 14 14 C 1.37631 * 120.12958 * 265.00196 * 13 12 10 15 15 C 1.38612 * 120.25146 * 179.97438 * 14 13 12 16 16 C 1.38663 * 120.49812 * 0.02562 * 15 14 13 17 17 C 1.37591 * 120.24706 * 0.02562 * 16 15 14 18 18 C 1.40699 * 120.12255 * 84.72544 * 13 12 10 19 19 C 1.41393 * 120.25171 * 359.97438 * 18 13 12 20 20 H 1.08003 * 119.99747 * 333.88696 * 19 18 13 21 21 C 1.39936 * 120.00402 * 153.88364 * 19 18 13 22 22 N 1.30823 * 120.00218 * 343.71761 * 21 19 18 23 23 Si 1.86806 * 120.00088 * 163.71993 * 21 19 18 24 24 H 1.48505 * 109.47079 * 90.00193 * 23 21 19 25 25 H 1.48502 * 109.47027 * 209.99966 * 23 21 19 26 26 H 1.48497 * 109.46857 * 330.00048 * 23 21 19 27 27 H 1.09007 * 109.47031 * 300.00195 * 1 2 3 28 28 H 1.08999 * 109.47483 * 60.00006 * 1 2 3 29 29 H 1.08998 * 109.47283 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47018 * 240.00440 * 2 1 3 31 31 H 1.08999 * 109.47483 * 119.99994 * 2 1 3 32 32 H 1.08999 * 109.47460 * 60.00436 * 3 2 1 33 33 H 1.09000 * 109.47456 * 299.99587 * 3 2 1 34 34 H 1.08999 * 109.47111 * 59.99670 * 4 3 2 35 35 H 1.08999 * 109.46972 * 299.99755 * 4 3 2 36 36 H 1.09002 * 109.47223 * 30.00183 * 6 5 4 37 37 H 1.08992 * 109.47096 * 150.00134 * 6 5 4 38 38 H 0.96995 * 119.99972 * 359.97438 * 8 7 6 39 39 H 0.97003 * 120.00518 * 179.97438 * 8 7 6 40 40 H 1.09007 * 109.47370 * 299.99976 * 12 10 5 41 41 H 1.08996 * 109.47401 * 60.00303 * 12 10 5 42 42 H 1.08005 * 119.87550 * 0.02562 * 14 13 12 43 43 H 1.07993 * 119.75095 * 180.02562 * 15 14 13 44 44 H 1.07996 * 119.87487 * 179.97438 * 16 15 14 45 45 H 1.08005 * 120.12515 * 179.97438 * 17 16 15 46 46 H 0.97001 * 120.00340 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 7 4.0582 2.8238 -0.0013 6 6 4.3019 3.5140 -1.2703 7 6 5.7250 3.2771 -1.7058 8 7 6.1778 3.8197 -2.8534 9 8 6.4632 2.5988 -1.0231 10 6 4.2833 3.4595 1.1656 11 8 4.0811 2.8882 2.2163 12 6 4.7861 4.8801 1.1650 13 6 4.9534 5.3545 2.5857 14 6 3.9448 6.0597 3.2018 15 6 4.0958 6.4968 4.5085 16 6 5.2621 6.2300 5.2095 17 6 6.2838 5.5276 4.6131 18 6 6.1389 5.0730 3.2891 19 6 7.1793 4.3438 2.6686 20 1 6.9531 3.6556 1.8675 21 6 8.5021 4.5137 3.0923 22 7 8.8278 5.5509 3.8201 23 14 9.8030 3.2595 2.6188 24 1 10.4267 3.6555 1.3306 25 1 10.8443 3.2030 3.6761 26 1 9.1723 1.9230 2.4733 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.6767 1.9564 0.8900 33 1 1.6767 1.9564 -0.8900 34 1 3.9329 0.9288 -0.8908 35 1 3.9337 0.9287 0.8891 36 1 3.6209 3.1297 -2.0296 37 1 4.1350 4.5832 -1.1402 38 1 5.5876 4.3624 -3.3992 39 1 7.0939 3.6675 -3.1336 40 1 5.7463 4.9256 0.6510 41 1 4.0683 5.5194 0.6511 42 1 3.0319 6.2728 2.6654 43 1 3.2990 7.0491 4.9843 44 1 5.3691 6.5757 6.2270 45 1 7.1916 5.3213 5.1608 46 1 9.7447 5.6685 4.1141 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776816691.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:04 Heat of formation + Delta-G solvation = -69.337800 kcal Electronic energy + Delta-G solvation = -27451.485415 eV Core-core repulsion = 23726.133071 eV Total energy + Delta-G solvation = -3725.352344 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.05997 -38.66492 -37.34890 -35.82170 -34.20561 -33.62106 -33.51400 -31.69716 -29.61309 -29.32226 -27.44497 -26.54423 -24.94278 -23.32449 -21.20706 -21.17532 -20.83121 -19.84532 -18.61415 -17.31891 -17.00640 -16.90115 -16.58586 -15.74637 -15.24069 -15.12571 -14.72875 -14.62153 -14.35164 -13.87645 -13.59316 -13.51283 -13.11050 -12.94113 -12.82861 -12.49418 -12.42762 -12.10785 -11.67540 -11.50019 -11.42911 -11.20529 -11.10674 -11.02223 -10.90933 -10.85179 -10.59574 -10.51756 -10.28639 -10.07671 -9.66539 -9.39682 -9.27246 -9.07556 -9.03153 -8.36813 -7.23085 -7.19431 -6.63385 -4.22445 2.69144 2.86205 2.99097 3.16254 3.18257 3.27068 3.37905 3.40413 3.74482 4.07950 4.75446 4.82278 4.85148 4.93806 5.01976 5.07649 5.14694 5.17373 5.47044 5.60379 5.67015 5.74106 5.79075 5.83545 5.97656 6.04035 6.11538 6.14318 6.30728 6.33607 6.34924 6.48641 6.58013 6.75319 6.81773 6.88852 7.21261 7.28622 7.38656 7.51227 7.70645 7.81213 8.01203 8.18829 8.22588 8.32055 8.42034 8.77043 8.88492 9.03736 9.11729 10.30569 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.010288 B = 0.005000 C = 0.004039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2721.026883 B = 5598.096546 C = 6930.177972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.122 4.122 3 C -0.134 4.134 4 C 0.120 3.880 5 N -0.609 5.609 6 C 0.094 3.906 7 C 0.488 3.512 8 N -0.860 5.860 9 O -0.515 6.515 10 C 0.524 3.476 11 O -0.510 6.510 12 C -0.069 4.069 13 C -0.183 4.183 14 C -0.080 4.080 15 C -0.242 4.242 16 C -0.107 4.107 17 C -0.159 4.159 18 C 0.130 3.870 19 C -0.451 4.451 20 H 0.078 0.922 21 C 0.079 3.921 22 N -0.797 5.797 23 Si 0.902 3.098 24 H -0.271 1.271 25 H -0.278 1.278 26 H -0.260 1.260 27 H 0.054 0.946 28 H 0.051 0.949 29 H 0.051 0.949 30 H 0.059 0.941 31 H 0.064 0.936 32 H 0.069 0.931 33 H 0.058 0.942 34 H 0.067 0.933 35 H 0.084 0.916 36 H 0.104 0.896 37 H 0.110 0.890 38 H 0.399 0.601 39 H 0.400 0.600 40 H 0.093 0.907 41 H 0.072 0.928 42 H 0.083 0.917 43 H 0.084 0.916 44 H 0.085 0.915 45 H 0.117 0.883 46 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.501 -3.829 -15.329 18.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.160 4.160 3 C -0.172 4.172 4 C -0.003 4.003 5 N -0.344 5.344 6 C -0.034 4.034 7 C 0.270 3.730 8 N -0.425 5.425 9 O -0.388 6.388 10 C 0.314 3.686 11 O -0.383 6.383 12 C -0.109 4.109 13 C -0.185 4.185 14 C -0.099 4.099 15 C -0.261 4.261 16 C -0.126 4.126 17 C -0.179 4.179 18 C 0.127 3.873 19 C -0.481 4.481 20 H 0.097 0.903 21 C -0.138 4.138 22 N -0.423 5.423 23 Si 0.726 3.274 24 H -0.196 1.196 25 H -0.203 1.203 26 H -0.184 1.184 27 H 0.074 0.926 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.078 0.922 31 H 0.083 0.917 32 H 0.087 0.913 33 H 0.077 0.923 34 H 0.085 0.915 35 H 0.102 0.898 36 H 0.122 0.878 37 H 0.128 0.872 38 H 0.226 0.774 39 H 0.231 0.769 40 H 0.111 0.889 41 H 0.091 0.909 42 H 0.101 0.899 43 H 0.102 0.898 44 H 0.103 0.897 45 H 0.134 0.866 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -9.065 -4.514 -13.996 17.275 hybrid contribution 0.863 -0.227 -0.781 1.186 sum -8.202 -4.741 -14.777 17.553 Atomic orbital electron populations 1.21752 0.95907 1.01337 1.01774 1.21446 0.95792 0.96685 1.02083 1.21991 0.95945 0.96900 1.02395 1.21369 0.93008 0.82799 1.03089 1.47701 1.67692 1.14178 1.04843 1.21352 0.93238 1.00382 0.88420 1.21481 0.91105 0.79585 0.80799 1.43877 1.17305 1.56018 1.25321 1.90848 1.57767 1.37553 1.52637 1.21185 0.75822 0.89282 0.82347 1.90673 1.49402 1.67705 1.30501 1.20306 1.01272 0.90966 0.98364 1.19034 0.98076 1.07752 0.93660 1.20263 0.96084 0.98723 0.94802 1.20268 0.98667 1.11042 0.96168 1.20662 0.94464 0.99801 0.97630 1.21295 0.98442 1.02772 0.95366 1.17343 0.90601 0.88607 0.90732 1.19573 0.90640 1.21039 1.16835 0.90346 1.25857 0.99972 0.94720 0.93298 1.69831 1.20087 1.24189 1.28206 0.86407 0.79830 0.82451 0.78672 1.19625 1.20269 1.18379 0.92649 0.92967 0.92946 0.92196 0.91698 0.91268 0.92289 0.91484 0.89765 0.87811 0.87171 0.77360 0.76908 0.88869 0.90949 0.89891 0.89759 0.89666 0.86560 0.91111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 9.91 37.16 0.37 -0.97 16 2 C -0.12 -1.23 5.93 -26.73 -0.16 -1.39 16 3 C -0.13 -1.57 5.54 -26.73 -0.15 -1.72 16 4 C 0.12 1.72 5.41 -4.04 -0.02 1.69 16 5 N -0.61 -9.60 1.96 -175.06 -0.34 -9.94 16 6 C 0.09 1.04 5.69 -5.20 -0.03 1.01 16 7 C 0.49 6.42 8.06 -10.99 -0.09 6.33 16 8 N -0.86 -7.13 8.87 31.22 0.28 -6.86 16 9 O -0.51 -9.95 17.27 5.55 0.10 -9.86 16 10 C 0.52 10.84 7.28 -10.99 -0.08 10.76 16 11 O -0.51 -12.80 15.61 5.55 0.09 -12.71 16 12 C -0.07 -1.43 3.73 -29.03 -0.11 -1.54 16 13 C -0.18 -4.58 4.43 -103.91 -0.46 -5.04 16 14 C -0.08 -1.90 9.66 -39.66 -0.38 -2.29 16 15 C -0.24 -5.79 10.05 -39.29 -0.39 -6.18 16 16 C -0.11 -2.70 10.02 -39.66 -0.40 -3.10 16 17 C -0.16 -4.43 8.69 -38.87 -0.34 -4.77 16 18 C 0.13 3.63 5.56 -106.82 -0.59 3.04 16 19 C -0.45 -12.74 8.14 -37.75 -0.31 -13.04 16 20 H 0.08 2.27 6.67 -52.48 -0.35 1.92 16 21 C 0.08 2.11 5.16 -17.35 -0.09 2.02 16 22 N -0.80 -21.54 10.96 55.55 0.61 -20.93 16 23 Si 0.90 20.74 29.59 -169.99 -5.03 15.71 16 24 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 25 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 26 H -0.26 -6.22 7.11 56.52 0.40 -5.82 16 27 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.07 0.83 8.07 -51.93 -0.42 0.41 16 35 H 0.08 1.46 7.42 -51.93 -0.39 1.07 16 36 H 0.10 0.72 8.07 -51.93 -0.42 0.30 16 37 H 0.11 1.01 6.44 -51.93 -0.33 0.68 16 38 H 0.40 1.71 8.83 -40.82 -0.36 1.35 16 39 H 0.40 3.27 8.93 -40.82 -0.36 2.90 16 40 H 0.09 1.99 6.94 -51.93 -0.36 1.63 16 41 H 0.07 1.19 7.31 -51.93 -0.38 0.81 16 42 H 0.08 1.70 8.06 -52.48 -0.42 1.28 16 43 H 0.08 1.78 8.06 -52.49 -0.42 1.36 16 44 H 0.09 1.92 8.06 -52.49 -0.42 1.50 16 45 H 0.12 3.32 6.21 -52.48 -0.33 2.99 16 46 H 0.28 6.87 8.30 -40.82 -0.34 6.53 16 LS Contribution 383.22 15.07 5.78 5.78 Total: -1.00 -36.44 383.22 -8.82 -45.26 By element: Atomic # 1 Polarization: 15.81 SS G_CDS: -7.06 Total: 8.75 kcal Atomic # 6 Polarization: -11.96 SS G_CDS: -3.23 Total: -15.19 kcal Atomic # 7 Polarization: -38.27 SS G_CDS: 0.54 Total: -37.73 kcal Atomic # 8 Polarization: -22.75 SS G_CDS: 0.18 Total: -22.57 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.03 Total: 15.71 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -36.44 -8.82 -45.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776816691.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.076 kcal (2) G-P(sol) polarization free energy of solvation -36.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds