Wall clock time and date at job start Tue Mar 31 2020 12:29:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.46876 * 2 1 4 4 C 1.53007 * 109.46997 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.46959 * 179.97438 * 4 3 2 6 6 C 1.46499 * 120.00044 * 269.99521 * 5 4 3 7 7 C 1.50695 * 109.47139 * 270.00517 * 6 5 4 8 8 N 1.34777 * 120.00154 * 180.02562 * 7 6 5 9 9 O 1.21283 * 120.00493 * 359.97438 * 7 6 5 10 10 C 1.34776 * 120.00015 * 89.99817 * 5 4 3 11 11 O 1.21287 * 119.99789 * 359.97438 * 10 5 4 12 12 C 1.50696 * 120.00043 * 179.97438 * 10 5 4 13 13 C 1.50705 * 109.47248 * 179.97438 * 12 10 5 14 14 C 1.37631 * 120.12958 * 265.00196 * 13 12 10 15 15 C 1.38612 * 120.25146 * 179.97438 * 14 13 12 16 16 C 1.38663 * 120.49812 * 0.02562 * 15 14 13 17 17 C 1.37591 * 120.24706 * 0.02562 * 16 15 14 18 18 C 1.40699 * 120.12255 * 84.72544 * 13 12 10 19 19 C 1.41393 * 120.25171 * 359.97438 * 18 13 12 20 20 H 1.08003 * 119.99747 * 333.88696 * 19 18 13 21 21 C 1.39936 * 120.00402 * 153.88364 * 19 18 13 22 22 N 1.30823 * 120.00218 * 343.71761 * 21 19 18 23 23 Si 1.86806 * 120.00088 * 163.71993 * 21 19 18 24 24 H 1.48505 * 109.47079 * 90.00193 * 23 21 19 25 25 H 1.48502 * 109.47027 * 209.99966 * 23 21 19 26 26 H 1.48497 * 109.46857 * 330.00048 * 23 21 19 27 27 H 1.09007 * 109.47031 * 300.00195 * 1 2 3 28 28 H 1.08999 * 109.47483 * 60.00006 * 1 2 3 29 29 H 1.08998 * 109.47283 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47018 * 240.00440 * 2 1 3 31 31 H 1.08999 * 109.47483 * 119.99994 * 2 1 3 32 32 H 1.08999 * 109.47460 * 60.00436 * 3 2 1 33 33 H 1.09000 * 109.47456 * 299.99587 * 3 2 1 34 34 H 1.08999 * 109.47111 * 59.99670 * 4 3 2 35 35 H 1.08999 * 109.46972 * 299.99755 * 4 3 2 36 36 H 1.09002 * 109.47223 * 30.00183 * 6 5 4 37 37 H 1.08992 * 109.47096 * 150.00134 * 6 5 4 38 38 H 0.96995 * 119.99972 * 359.97438 * 8 7 6 39 39 H 0.97003 * 120.00518 * 179.97438 * 8 7 6 40 40 H 1.09007 * 109.47370 * 299.99976 * 12 10 5 41 41 H 1.08996 * 109.47401 * 60.00303 * 12 10 5 42 42 H 1.08005 * 119.87550 * 0.02562 * 14 13 12 43 43 H 1.07993 * 119.75095 * 180.02562 * 15 14 13 44 44 H 1.07996 * 119.87487 * 179.97438 * 16 15 14 45 45 H 1.08005 * 120.12515 * 179.97438 * 17 16 15 46 46 H 0.97001 * 120.00340 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 7 4.0582 2.8238 -0.0013 6 6 4.3019 3.5140 -1.2703 7 6 5.7250 3.2771 -1.7058 8 7 6.1778 3.8197 -2.8534 9 8 6.4632 2.5988 -1.0231 10 6 4.2833 3.4595 1.1656 11 8 4.0811 2.8882 2.2163 12 6 4.7861 4.8801 1.1650 13 6 4.9534 5.3545 2.5857 14 6 3.9448 6.0597 3.2018 15 6 4.0958 6.4968 4.5085 16 6 5.2621 6.2300 5.2095 17 6 6.2838 5.5276 4.6131 18 6 6.1389 5.0730 3.2891 19 6 7.1793 4.3438 2.6686 20 1 6.9531 3.6556 1.8675 21 6 8.5021 4.5137 3.0923 22 7 8.8278 5.5509 3.8201 23 14 9.8030 3.2595 2.6188 24 1 10.4267 3.6555 1.3306 25 1 10.8443 3.2030 3.6761 26 1 9.1723 1.9230 2.4733 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.6767 1.9564 0.8900 33 1 1.6767 1.9564 -0.8900 34 1 3.9329 0.9288 -0.8908 35 1 3.9337 0.9287 0.8891 36 1 3.6209 3.1297 -2.0296 37 1 4.1350 4.5832 -1.1402 38 1 5.5876 4.3624 -3.3992 39 1 7.0939 3.6675 -3.1336 40 1 5.7463 4.9256 0.6510 41 1 4.0683 5.5194 0.6511 42 1 3.0319 6.2728 2.6654 43 1 3.2990 7.0491 4.9843 44 1 5.3691 6.5757 6.2270 45 1 7.1916 5.3213 5.1608 46 1 9.7447 5.6685 4.1141 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776816691.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:04 Heat of formation + Delta-G solvation = -94.538560 kcal Electronic energy + Delta-G solvation = -27452.578202 eV Core-core repulsion = 23726.133071 eV Total energy + Delta-G solvation = -3726.445131 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.36691 -40.01701 -39.13835 -37.06438 -35.52216 -35.31504 -34.57172 -33.43210 -31.36713 -30.62869 -28.80540 -27.96068 -26.86022 -24.49297 -22.82331 -22.32786 -22.08497 -21.52571 -19.95867 -19.08379 -18.36742 -18.00053 -17.79635 -17.26447 -16.80996 -16.23605 -16.16166 -16.09082 -15.75490 -15.39976 -15.26913 -14.64263 -14.51667 -14.38580 -14.35867 -13.87785 -13.53207 -13.41369 -13.37718 -13.06044 -12.91284 -12.80487 -12.73579 -12.50819 -12.28409 -12.17029 -12.13667 -11.92718 -11.44739 -11.33284 -11.23828 -11.21141 -11.05578 -10.70724 -10.56323 -9.63642 -9.22254 -9.16112 -8.63195 -6.30663 0.96568 1.12232 1.26564 1.39748 1.47310 1.69231 1.74984 2.08110 2.16736 2.74348 2.78338 3.62512 3.88860 3.95808 4.08137 4.14042 4.20121 4.25562 4.30560 4.32117 4.43726 4.49397 4.60912 4.64864 4.71172 4.75675 4.78607 4.92701 4.95790 5.05582 5.09999 5.19162 5.28486 5.36657 5.38746 5.46309 5.54224 5.63510 5.77153 5.97159 6.02838 6.17132 6.21407 6.36424 6.42131 6.61493 6.74610 6.98830 7.10388 7.36295 7.47528 8.32953 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.010288 B = 0.005000 C = 0.004039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2721.026883 B = 5598.096546 C = 6930.177972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.121 4.121 3 C -0.120 4.120 4 C 0.119 3.881 5 N -0.602 5.602 6 C 0.087 3.913 7 C 0.484 3.516 8 N -0.833 5.833 9 O -0.589 6.589 10 C 0.521 3.479 11 O -0.571 6.571 12 C -0.065 4.065 13 C -0.189 4.189 14 C -0.088 4.088 15 C -0.239 4.239 16 C -0.117 4.117 17 C -0.193 4.193 18 C 0.095 3.905 19 C -0.479 4.479 20 H 0.058 0.942 21 C 0.043 3.957 22 N -0.823 5.823 23 Si 0.961 3.039 24 H -0.259 1.259 25 H -0.258 1.258 26 H -0.281 1.281 27 H 0.043 0.957 28 H 0.067 0.933 29 H 0.061 0.939 30 H 0.078 0.922 31 H 0.045 0.955 32 H 0.039 0.961 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.040 0.960 36 H 0.159 0.841 37 H 0.136 0.864 38 H 0.422 0.578 39 H 0.404 0.596 40 H 0.081 0.919 41 H 0.121 0.879 42 H 0.122 0.878 43 H 0.119 0.881 44 H 0.107 0.893 45 H 0.095 0.905 46 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.602 -2.942 -18.367 21.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.159 4.159 3 C -0.159 4.159 4 C -0.004 4.004 5 N -0.334 5.334 6 C -0.039 4.039 7 C 0.268 3.732 8 N -0.399 5.399 9 O -0.468 6.468 10 C 0.311 3.689 11 O -0.449 6.449 12 C -0.105 4.105 13 C -0.190 4.190 14 C -0.106 4.106 15 C -0.258 4.258 16 C -0.135 4.135 17 C -0.213 4.213 18 C 0.093 3.907 19 C -0.509 4.509 20 H 0.077 0.923 21 C -0.172 4.172 22 N -0.449 5.449 23 Si 0.784 3.216 24 H -0.184 1.184 25 H -0.182 1.182 26 H -0.207 1.207 27 H 0.062 0.938 28 H 0.086 0.914 29 H 0.080 0.920 30 H 0.097 0.903 31 H 0.064 0.936 32 H 0.058 0.942 33 H 0.109 0.891 34 H 0.109 0.891 35 H 0.058 0.942 36 H 0.176 0.824 37 H 0.154 0.846 38 H 0.254 0.746 39 H 0.234 0.766 40 H 0.099 0.901 41 H 0.138 0.862 42 H 0.140 0.860 43 H 0.137 0.863 44 H 0.125 0.875 45 H 0.113 0.887 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -11.186 -3.570 -17.143 20.779 hybrid contribution 1.391 -0.444 0.072 1.462 sum -9.795 -4.013 -17.072 20.087 Atomic orbital electron populations 1.21730 0.94660 1.02112 1.01981 1.21452 0.96828 0.95561 1.02105 1.21878 0.93543 0.98032 1.02429 1.21469 0.94900 0.81896 1.02092 1.47637 1.65930 1.14532 1.05291 1.21861 0.92998 1.01787 0.87293 1.21871 0.91522 0.78724 0.81102 1.43665 1.17826 1.54527 1.23860 1.90842 1.59643 1.41190 1.55132 1.21150 0.75367 0.89354 0.82987 1.90644 1.52380 1.68862 1.32999 1.20289 1.02012 0.92010 0.96155 1.19550 0.97164 1.06609 0.95716 1.20734 0.97031 0.97757 0.95100 1.20741 0.98692 1.09974 0.96370 1.20956 0.94444 0.99280 0.98820 1.21287 0.98955 1.05181 0.95874 1.17710 0.92137 0.89539 0.91299 1.19539 0.91931 1.21946 1.17520 0.92341 1.26465 1.01272 0.96104 0.93318 1.69859 1.20928 1.25155 1.28988 0.85532 0.77802 0.78930 0.79371 1.18358 1.18159 1.20658 0.93793 0.91371 0.91959 0.90307 0.93645 0.94174 0.89056 0.89096 0.94161 0.82378 0.84612 0.74601 0.76565 0.90092 0.86156 0.85994 0.86306 0.87535 0.88669 0.90325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.32 9.91 71.98 0.71 -1.61 16 2 C -0.12 -2.28 5.93 30.59 0.18 -2.10 16 3 C -0.12 -2.64 5.54 30.60 0.17 -2.47 16 4 C 0.12 3.35 5.41 86.38 0.47 3.82 16 5 N -0.60 -18.33 1.96 -826.16 -1.62 -19.95 16 6 C 0.09 1.60 5.69 85.63 0.49 2.09 16 7 C 0.48 11.87 8.06 87.66 0.71 12.57 16 8 N -0.83 -11.47 8.87 -173.53 -1.54 -13.01 16 9 O -0.59 -23.15 17.27 -3.04 -0.05 -23.20 16 10 C 0.52 21.78 7.28 87.66 0.64 22.41 16 11 O -0.57 -30.02 15.61 -3.05 -0.05 -30.07 16 12 C -0.07 -2.64 3.73 29.10 0.11 -2.53 16 13 C -0.19 -9.48 4.43 -19.40 -0.09 -9.56 16 14 C -0.09 -4.02 9.66 22.22 0.21 -3.80 16 15 C -0.24 -11.00 10.05 22.46 0.23 -10.78 16 16 C -0.12 -5.91 10.02 22.22 0.22 -5.69 16 17 C -0.19 -11.19 8.69 22.73 0.20 -10.99 16 18 C 0.10 5.55 5.56 -21.29 -0.12 5.44 16 19 C -0.48 -28.55 8.14 23.46 0.19 -28.36 16 20 H 0.06 3.62 6.67 -2.91 -0.02 3.60 16 21 C 0.04 2.40 5.16 85.25 0.44 2.84 16 22 N -0.82 -46.18 10.96 21.82 0.24 -45.94 16 23 Si 0.96 44.45 29.59 68.60 2.03 46.48 16 24 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 25 H -0.26 -10.95 7.11 99.48 0.71 -10.24 16 26 H -0.28 -13.86 7.11 99.48 0.71 -13.15 16 27 H 0.04 0.78 8.14 -2.38 -0.02 0.76 16 28 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.09 2.11 8.07 -2.39 -0.02 2.09 16 35 H 0.04 1.49 7.42 -2.39 -0.02 1.47 16 36 H 0.16 1.25 8.07 -2.39 -0.02 1.23 16 37 H 0.14 1.86 6.44 -2.39 -0.02 1.84 16 38 H 0.42 1.84 8.83 -92.71 -0.82 1.03 16 39 H 0.40 5.75 8.93 -92.71 -0.83 4.92 16 40 H 0.08 3.49 6.94 -2.38 -0.02 3.48 16 41 H 0.12 3.55 7.31 -2.39 -0.02 3.54 16 42 H 0.12 4.54 8.06 -2.91 -0.02 4.52 16 43 H 0.12 4.61 8.06 -2.91 -0.02 4.58 16 44 H 0.11 4.78 8.06 -2.91 -0.02 4.75 16 45 H 0.10 5.77 6.21 -2.91 -0.02 5.75 16 46 H 0.29 14.54 8.30 -92.71 -0.77 13.78 16 Total: -1.00 -87.87 383.22 3.12 -84.74 By element: Atomic # 1 Polarization: 30.29 SS G_CDS: -0.64 Total: 29.65 kcal Atomic # 6 Polarization: -33.47 SS G_CDS: 4.76 Total: -28.71 kcal Atomic # 7 Polarization: -75.97 SS G_CDS: -2.92 Total: -78.89 kcal Atomic # 8 Polarization: -53.17 SS G_CDS: -0.10 Total: -53.27 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.48 kcal Total: -87.87 3.12 -84.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776816691.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.795 kcal (2) G-P(sol) polarization free energy of solvation -87.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds