Wall clock time and date at job start Tue Mar 31 2020 12:31:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34780 * 119.99349 * 2 1 4 4 O 1.21276 * 120.00392 * 359.97438 * 3 2 1 5 5 C 1.50706 * 119.99455 * 180.02562 * 3 2 1 6 6 C 1.52994 * 109.47289 * 59.99327 * 5 3 2 7 7 C 1.53004 * 109.46798 * 299.99348 * 5 3 2 8 8 C 1.52996 * 109.46825 * 179.97438 * 5 3 2 9 9 N 1.46507 * 109.47103 * 179.97438 * 8 5 3 10 10 C 1.34773 * 120.00266 * 180.02562 * 9 8 5 11 11 O 1.21282 * 119.99503 * 359.97438 * 10 9 8 12 12 C 1.50694 * 120.00092 * 180.02562 * 10 9 8 13 13 C 1.50707 * 109.47262 * 179.97438 * 12 10 9 14 14 C 1.37643 * 120.12639 * 265.30991 * 13 12 10 15 15 C 1.38615 * 120.24281 * 180.31829 * 14 13 12 16 16 C 1.38658 * 120.50051 * 359.66907 * 15 14 13 17 17 C 1.37593 * 120.25264 * 0.02562 * 16 15 14 18 18 C 1.40688 * 120.12508 * 84.99750 * 13 12 10 19 19 C 1.41401 * 120.24844 * 359.97438 * 18 13 12 20 20 H 1.07999 * 119.99289 * 334.28466 * 19 18 13 21 21 C 1.39937 * 120.00394 * 154.28925 * 19 18 13 22 22 N 1.30829 * 120.00181 * 334.60180 * 21 19 18 23 23 Si 1.86801 * 120.00083 * 154.60226 * 21 19 18 24 24 H 1.48505 * 109.47160 * 179.97438 * 23 21 19 25 25 H 1.48495 * 109.47100 * 300.00105 * 23 21 19 26 26 H 1.48502 * 109.47051 * 60.00179 * 23 21 19 27 27 H 1.09001 * 109.46911 * 299.99984 * 1 2 3 28 28 H 1.08998 * 109.47274 * 60.00423 * 1 2 3 29 29 H 1.09003 * 109.46554 * 180.02562 * 1 2 3 30 30 H 0.97000 * 120.00088 * 179.97438 * 2 1 3 31 31 H 1.09009 * 109.46861 * 179.97438 * 6 5 3 32 32 H 1.08993 * 109.47464 * 299.99840 * 6 5 3 33 33 H 1.09003 * 109.46917 * 60.00574 * 6 5 3 34 34 H 1.09001 * 109.47500 * 300.00149 * 7 5 3 35 35 H 1.09003 * 109.47330 * 60.00637 * 7 5 3 36 36 H 1.08997 * 109.46981 * 180.02562 * 7 5 3 37 37 H 1.09001 * 109.47212 * 60.00010 * 8 5 3 38 38 H 1.08991 * 109.47261 * 299.99844 * 8 5 3 39 39 H 0.97000 * 119.99705 * 0.02562 * 9 8 5 40 40 H 1.09001 * 109.46892 * 59.99768 * 12 10 9 41 41 H 1.08991 * 109.47294 * 299.99778 * 12 10 9 42 42 H 1.07998 * 119.87840 * 0.02562 * 14 13 12 43 43 H 1.07996 * 119.74749 * 179.68975 * 15 14 13 44 44 H 1.08000 * 119.87393 * 180.02562 * 16 15 14 45 45 H 1.07996 * 120.12941 * 180.02562 * 17 16 15 46 46 H 0.96998 * 119.99709 * 354.17607 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 1.5324 2.2176 -0.0005 5 6 3.6459 1.1673 -0.0006 6 6 4.1554 0.4463 -1.2500 7 6 4.1563 0.4459 1.2484 8 6 4.1558 2.6098 -0.0011 9 7 5.6208 2.6099 -0.0011 10 6 6.2947 3.7771 -0.0009 11 8 5.6881 4.8274 -0.0014 12 6 7.8016 3.7772 -0.0015 13 6 8.3039 5.1980 -0.0019 14 6 8.6256 5.8168 -1.1886 15 6 9.0941 7.1213 -1.1912 16 6 9.2377 7.8199 -0.0021 17 6 8.9163 7.2235 1.1954 18 6 8.4397 5.8993 1.2102 19 6 8.1056 5.2764 2.4348 20 1 7.3866 4.4707 2.4522 21 6 8.7063 5.7039 3.6242 22 7 9.8788 6.2836 3.5933 23 14 7.8343 5.4468 5.2560 24 1 8.6750 5.9833 6.3564 25 1 6.5301 6.1567 5.2376 26 1 7.6050 3.9955 5.4715 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3632 -1.0277 0.0005 30 1 1.9501 -0.8400 0.0004 31 1 5.2455 0.4467 -1.2506 32 1 3.7922 -0.5814 -1.2501 33 1 3.7918 0.9603 -2.1398 34 1 3.7933 0.9596 2.1386 35 1 3.7931 -0.5818 1.2484 36 1 5.2463 0.4463 1.2483 37 1 3.7927 3.1238 0.8889 38 1 3.7921 3.1234 -0.8910 39 1 6.1058 1.7699 -0.0011 40 1 8.1646 3.2636 -0.8917 41 1 8.1653 3.2632 0.8882 42 1 8.5170 5.2822 -2.1207 43 1 9.3488 7.5973 -2.1265 44 1 9.6033 8.8361 -0.0160 45 1 9.0286 7.7695 2.1204 46 1 10.3693 6.3415 2.7585 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000777046319.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:31:36 Heat of formation + Delta-G solvation = -74.127867 kcal Electronic energy + Delta-G solvation = -26775.617542 eV Core-core repulsion = 23050.057486 eV Total energy + Delta-G solvation = -3725.560057 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.56542 -39.11986 -37.56106 -36.22805 -34.94935 -33.79068 -32.82462 -31.66328 -29.15359 -27.70698 -27.67021 -27.08358 -25.81770 -24.75643 -22.57220 -20.88151 -20.63244 -19.71628 -19.57404 -17.73433 -17.24204 -16.61934 -15.90127 -15.70971 -15.42559 -15.09922 -14.78287 -14.36754 -14.22933 -14.01521 -13.88764 -13.72316 -13.44493 -13.08611 -12.92914 -12.64584 -12.50817 -12.40769 -12.24614 -12.08530 -11.93992 -11.68590 -11.39283 -11.18043 -11.12283 -11.01375 -10.78770 -10.41431 -10.34520 -9.96166 -9.59072 -9.44957 -9.32257 -9.14975 -8.90037 -8.66349 -7.49284 -7.44355 -7.06519 -4.35908 2.39616 2.75045 2.87556 2.92455 3.19317 3.33208 3.38845 3.42280 3.73559 4.07032 4.25431 4.42082 4.54141 4.65146 4.74049 4.92300 5.15927 5.20280 5.36400 5.37427 5.40569 5.47545 5.52954 5.72396 5.75248 5.79262 5.93577 5.96087 6.02888 6.07005 6.20634 6.23693 6.38023 6.42311 6.74254 6.79795 7.06431 7.12576 7.27486 7.48433 7.73649 7.88898 7.92077 7.94553 7.96600 8.02239 8.27284 8.41217 8.85117 8.91069 8.99064 10.12893 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.014196 B = 0.003467 C = 0.003004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1971.866435 B = 8074.131941 C = 9318.047375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.735 5.735 3 C 0.526 3.474 4 O -0.528 6.528 5 C -0.094 4.094 6 C -0.140 4.140 7 C -0.142 4.142 8 C 0.146 3.854 9 N -0.744 5.744 10 C 0.513 3.487 11 O -0.517 6.517 12 C -0.069 4.069 13 C -0.184 4.184 14 C -0.069 4.069 15 C -0.253 4.253 16 C -0.087 4.087 17 C -0.216 4.216 18 C 0.116 3.884 19 C -0.516 4.516 20 H 0.072 0.928 21 C 0.041 3.959 22 N -0.800 5.800 23 Si 1.059 2.941 24 H -0.274 1.274 25 H -0.275 1.275 26 H -0.277 1.277 27 H 0.060 0.940 28 H 0.059 0.941 29 H 0.074 0.926 30 H 0.401 0.599 31 H 0.072 0.928 32 H 0.061 0.939 33 H 0.064 0.936 34 H 0.066 0.934 35 H 0.061 0.939 36 H 0.073 0.927 37 H 0.072 0.928 38 H 0.070 0.930 39 H 0.393 0.607 40 H 0.075 0.925 41 H 0.095 0.905 42 H 0.086 0.914 43 H 0.087 0.913 44 H 0.088 0.912 45 H 0.104 0.896 46 H 0.299 0.701 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.635 -18.492 -5.073 21.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.388 5.388 3 C 0.311 3.689 4 O -0.403 6.403 5 C -0.098 4.098 6 C -0.198 4.198 7 C -0.199 4.199 8 C 0.022 3.978 9 N -0.400 5.400 10 C 0.301 3.699 11 O -0.390 6.390 12 C -0.109 4.109 13 C -0.186 4.186 14 C -0.087 4.087 15 C -0.273 4.273 16 C -0.105 4.105 17 C -0.235 4.235 18 C 0.113 3.887 19 C -0.545 4.545 20 H 0.090 0.910 21 C -0.181 4.181 22 N -0.423 5.423 23 Si 0.884 3.116 24 H -0.199 1.199 25 H -0.200 1.200 26 H -0.203 1.203 27 H 0.079 0.921 28 H 0.078 0.922 29 H 0.093 0.907 30 H 0.235 0.765 31 H 0.091 0.909 32 H 0.080 0.920 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.080 0.920 36 H 0.092 0.908 37 H 0.091 0.909 38 H 0.089 0.911 39 H 0.227 0.773 40 H 0.093 0.907 41 H 0.113 0.887 42 H 0.104 0.896 43 H 0.105 0.895 44 H 0.106 0.894 45 H 0.122 0.878 46 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -11.377 -16.589 -3.436 20.406 hybrid contribution 0.166 -1.116 -1.732 2.068 sum -11.211 -17.705 -5.168 21.584 Atomic orbital electron populations 1.21543 0.79555 1.02122 1.02500 1.45769 1.07689 1.08693 1.76629 1.20394 0.89466 0.83622 0.75421 1.90758 1.70175 1.31203 1.48141 1.21004 0.91915 0.98348 0.98503 1.21875 1.02340 0.99638 0.95935 1.21889 1.02466 0.99589 0.95996 1.20945 0.80674 0.92690 1.03535 1.46156 1.06107 1.09037 1.78718 1.21193 0.90842 0.82844 0.75063 1.90705 1.70244 1.31239 1.46806 1.20239 0.89958 0.97959 1.02701 1.19013 1.11983 0.93870 0.93739 1.20355 0.98244 0.94685 0.95456 1.20259 1.14384 0.96410 0.96204 1.20600 0.99145 0.97457 0.93299 1.21140 1.10097 0.95717 0.96574 1.17394 0.88435 0.90696 0.92129 1.20438 1.23266 1.18391 0.92366 0.90963 1.26912 0.94950 0.91778 1.04459 1.70450 1.09401 1.28977 1.33508 0.83722 0.76409 0.77456 0.74062 1.19910 1.20021 1.20279 0.92145 0.92185 0.90704 0.76514 0.90900 0.91995 0.91685 0.91486 0.92007 0.90795 0.90933 0.91135 0.77264 0.90692 0.88692 0.89623 0.89482 0.89414 0.87771 0.88746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.57 10.70 59.85 0.64 1.21 16 2 N -0.74 -5.46 5.50 -67.07 -0.37 -5.83 16 3 C 0.53 5.97 6.48 -10.98 -0.07 5.90 16 4 O -0.53 -8.53 15.98 5.56 0.09 -8.44 16 5 C -0.09 -0.93 0.63 -155.66 -0.10 -1.02 16 6 C -0.14 -1.02 8.20 37.15 0.30 -0.72 16 7 C -0.14 -1.13 8.20 37.16 0.30 -0.83 16 8 C 0.15 2.13 3.85 -4.04 -0.02 2.11 16 9 N -0.74 -10.81 4.96 -60.30 -0.30 -11.11 16 10 C 0.51 10.23 7.46 -10.99 -0.08 10.15 16 11 O -0.52 -13.03 16.03 5.56 0.09 -12.94 16 12 C -0.07 -1.35 5.18 -29.03 -0.15 -1.50 16 13 C -0.18 -4.49 4.43 -103.91 -0.46 -4.95 16 14 C -0.07 -1.62 9.66 -39.66 -0.38 -2.00 16 15 C -0.25 -5.97 10.05 -39.29 -0.39 -6.37 16 16 C -0.09 -2.13 10.02 -39.66 -0.40 -2.53 16 17 C -0.22 -5.81 7.95 -38.87 -0.31 -6.12 16 18 C 0.12 3.14 5.30 -106.82 -0.57 2.58 16 19 C -0.52 -13.81 8.08 -37.74 -0.30 -14.12 16 20 H 0.07 1.90 6.73 -52.49 -0.35 1.54 16 21 C 0.04 1.05 4.94 -17.34 -0.09 0.96 16 22 N -0.80 -21.45 12.31 55.55 0.68 -20.77 16 23 Si 1.06 22.34 30.00 -169.99 -5.10 17.24 16 24 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 25 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 26 H -0.28 -5.44 7.11 56.52 0.40 -5.04 16 27 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.40 1.73 7.67 -40.82 -0.31 1.42 16 31 H 0.07 0.48 6.86 -51.92 -0.36 0.13 16 32 H 0.06 0.29 7.56 -51.93 -0.39 -0.10 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.06 0.32 7.56 -51.93 -0.39 -0.07 16 36 H 0.07 0.55 6.86 -51.93 -0.36 0.20 16 37 H 0.07 1.26 8.10 -51.93 -0.42 0.84 16 38 H 0.07 1.17 8.10 -51.93 -0.42 0.75 16 39 H 0.39 4.25 6.16 -40.82 -0.25 4.00 16 40 H 0.07 1.21 8.05 -51.93 -0.42 0.79 16 41 H 0.09 1.83 7.06 -51.93 -0.37 1.46 16 42 H 0.09 1.76 8.06 -52.49 -0.42 1.33 16 43 H 0.09 1.82 8.06 -52.49 -0.42 1.40 16 44 H 0.09 1.92 8.06 -52.49 -0.42 1.50 16 45 H 0.10 2.88 6.49 -52.49 -0.34 2.54 16 46 H 0.30 8.20 6.68 -40.82 -0.27 7.93 16 LS Contribution 376.02 15.07 5.67 5.67 Total: -1.00 -35.13 376.02 -8.14 -43.27 By element: Atomic # 1 Polarization: 16.99 SS G_CDS: -6.83 Total: 10.16 kcal Atomic # 6 Polarization: -15.18 SS G_CDS: -2.07 Total: -17.25 kcal Atomic # 7 Polarization: -37.72 SS G_CDS: 0.02 Total: -37.70 kcal Atomic # 8 Polarization: -21.56 SS G_CDS: 0.18 Total: -21.38 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.10 Total: 17.24 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -35.13 -8.14 -43.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777046319.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.860 kcal (2) G-P(sol) polarization free energy of solvation -35.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds