Wall clock time and date at job start Tue Mar 31 2020 12:31:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34780 * 119.99349 * 2 1 4 4 O 1.21276 * 120.00392 * 359.97438 * 3 2 1 5 5 C 1.50706 * 119.99455 * 180.02562 * 3 2 1 6 6 C 1.52994 * 109.47289 * 59.99327 * 5 3 2 7 7 C 1.53004 * 109.46798 * 299.99348 * 5 3 2 8 8 C 1.52996 * 109.46825 * 179.97438 * 5 3 2 9 9 N 1.46507 * 109.47103 * 179.97438 * 8 5 3 10 10 C 1.34773 * 120.00266 * 180.02562 * 9 8 5 11 11 O 1.21282 * 119.99503 * 359.97438 * 10 9 8 12 12 C 1.50694 * 120.00092 * 180.02562 * 10 9 8 13 13 C 1.50707 * 109.47262 * 179.97438 * 12 10 9 14 14 C 1.37643 * 120.12639 * 265.30991 * 13 12 10 15 15 C 1.38615 * 120.24281 * 180.31829 * 14 13 12 16 16 C 1.38658 * 120.50051 * 359.66907 * 15 14 13 17 17 C 1.37593 * 120.25264 * 0.02562 * 16 15 14 18 18 C 1.40688 * 120.12508 * 84.99750 * 13 12 10 19 19 C 1.41401 * 120.24844 * 359.97438 * 18 13 12 20 20 H 1.07999 * 119.99289 * 334.28466 * 19 18 13 21 21 C 1.39937 * 120.00394 * 154.28925 * 19 18 13 22 22 N 1.30829 * 120.00181 * 334.60180 * 21 19 18 23 23 Si 1.86801 * 120.00083 * 154.60226 * 21 19 18 24 24 H 1.48505 * 109.47160 * 179.97438 * 23 21 19 25 25 H 1.48495 * 109.47100 * 300.00105 * 23 21 19 26 26 H 1.48502 * 109.47051 * 60.00179 * 23 21 19 27 27 H 1.09001 * 109.46911 * 299.99984 * 1 2 3 28 28 H 1.08998 * 109.47274 * 60.00423 * 1 2 3 29 29 H 1.09003 * 109.46554 * 180.02562 * 1 2 3 30 30 H 0.97000 * 120.00088 * 179.97438 * 2 1 3 31 31 H 1.09009 * 109.46861 * 179.97438 * 6 5 3 32 32 H 1.08993 * 109.47464 * 299.99840 * 6 5 3 33 33 H 1.09003 * 109.46917 * 60.00574 * 6 5 3 34 34 H 1.09001 * 109.47500 * 300.00149 * 7 5 3 35 35 H 1.09003 * 109.47330 * 60.00637 * 7 5 3 36 36 H 1.08997 * 109.46981 * 180.02562 * 7 5 3 37 37 H 1.09001 * 109.47212 * 60.00010 * 8 5 3 38 38 H 1.08991 * 109.47261 * 299.99844 * 8 5 3 39 39 H 0.97000 * 119.99705 * 0.02562 * 9 8 5 40 40 H 1.09001 * 109.46892 * 59.99768 * 12 10 9 41 41 H 1.08991 * 109.47294 * 299.99778 * 12 10 9 42 42 H 1.07998 * 119.87840 * 0.02562 * 14 13 12 43 43 H 1.07996 * 119.74749 * 179.68975 * 15 14 13 44 44 H 1.08000 * 119.87393 * 180.02562 * 16 15 14 45 45 H 1.07996 * 120.12941 * 180.02562 * 17 16 15 46 46 H 0.96998 * 119.99709 * 354.17607 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 1.5324 2.2176 -0.0005 5 6 3.6459 1.1673 -0.0006 6 6 4.1554 0.4463 -1.2500 7 6 4.1563 0.4459 1.2484 8 6 4.1558 2.6098 -0.0011 9 7 5.6208 2.6099 -0.0011 10 6 6.2947 3.7771 -0.0009 11 8 5.6881 4.8274 -0.0014 12 6 7.8016 3.7772 -0.0015 13 6 8.3039 5.1980 -0.0019 14 6 8.6256 5.8168 -1.1886 15 6 9.0941 7.1213 -1.1912 16 6 9.2377 7.8199 -0.0021 17 6 8.9163 7.2235 1.1954 18 6 8.4397 5.8993 1.2102 19 6 8.1056 5.2764 2.4348 20 1 7.3866 4.4707 2.4522 21 6 8.7063 5.7039 3.6242 22 7 9.8788 6.2836 3.5933 23 14 7.8343 5.4468 5.2560 24 1 8.6750 5.9833 6.3564 25 1 6.5301 6.1567 5.2376 26 1 7.6050 3.9955 5.4715 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3632 -1.0277 0.0005 30 1 1.9501 -0.8400 0.0004 31 1 5.2455 0.4467 -1.2506 32 1 3.7922 -0.5814 -1.2501 33 1 3.7918 0.9603 -2.1398 34 1 3.7933 0.9596 2.1386 35 1 3.7931 -0.5818 1.2484 36 1 5.2463 0.4463 1.2483 37 1 3.7927 3.1238 0.8889 38 1 3.7921 3.1234 -0.8910 39 1 6.1058 1.7699 -0.0011 40 1 8.1646 3.2636 -0.8917 41 1 8.1653 3.2632 0.8882 42 1 8.5170 5.2822 -2.1207 43 1 9.3488 7.5973 -2.1265 44 1 9.6033 8.8361 -0.0160 45 1 9.0286 7.7695 2.1204 46 1 10.3693 6.3415 2.7585 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000777046319.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:31:35 Heat of formation + Delta-G solvation = -99.085735 kcal Electronic energy + Delta-G solvation = -26776.699797 eV Core-core repulsion = 23050.057486 eV Total energy + Delta-G solvation = -3726.642311 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.54777 -40.65099 -39.33418 -37.38566 -35.77707 -35.72843 -34.14574 -33.36595 -31.09601 -29.14709 -28.31071 -27.82830 -27.24885 -26.53466 -23.56487 -22.81996 -22.19555 -21.23687 -20.59330 -19.62446 -18.39818 -17.64014 -17.10960 -16.87884 -16.77668 -16.46835 -16.42684 -15.85165 -15.80057 -15.41005 -14.91816 -14.88523 -14.73664 -14.35474 -14.17959 -13.89354 -13.83663 -13.51880 -13.25417 -13.23790 -13.12963 -12.97596 -12.92298 -12.68958 -12.58792 -12.24426 -12.12928 -11.98589 -11.97699 -11.47892 -11.21131 -10.94088 -10.83912 -10.78000 -10.19992 -10.06714 -9.43734 -9.42055 -9.04882 -6.38656 0.91447 0.99510 1.46358 1.52883 1.61878 1.76257 1.79992 1.98586 2.30898 2.51258 2.73277 3.38838 3.59722 3.71340 3.74656 4.02120 4.07317 4.30516 4.37407 4.45911 4.49748 4.54367 4.59422 4.61124 4.68109 4.72111 4.73402 4.83169 4.86320 4.91509 4.94602 5.00034 5.08603 5.21613 5.27587 5.33790 5.38626 5.46558 5.51152 5.80977 5.85331 5.99830 6.05952 6.30273 6.46077 6.47657 6.65064 6.87682 7.03240 7.19063 7.42246 8.09404 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.014196 B = 0.003467 C = 0.003004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1971.866435 B = 8074.131941 C = 9318.047375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.714 5.714 3 C 0.520 3.480 4 O -0.588 6.588 5 C -0.083 4.083 6 C -0.138 4.138 7 C -0.141 4.141 8 C 0.150 3.850 9 N -0.714 5.714 10 C 0.514 3.486 11 O -0.579 6.579 12 C -0.066 4.066 13 C -0.191 4.191 14 C -0.081 4.081 15 C -0.252 4.252 16 C -0.098 4.098 17 C -0.247 4.247 18 C 0.085 3.915 19 C -0.541 4.541 20 H 0.069 0.931 21 C 0.005 3.995 22 N -0.819 5.819 23 Si 1.105 2.895 24 H -0.268 1.268 25 H -0.280 1.280 26 H -0.249 1.249 27 H 0.045 0.955 28 H 0.047 0.953 29 H 0.117 0.883 30 H 0.421 0.579 31 H 0.085 0.915 32 H 0.098 0.902 33 H 0.051 0.949 34 H 0.045 0.955 35 H 0.100 0.900 36 H 0.083 0.917 37 H 0.036 0.964 38 H 0.045 0.955 39 H 0.416 0.584 40 H 0.119 0.881 41 H 0.099 0.901 42 H 0.121 0.879 43 H 0.119 0.881 44 H 0.108 0.892 45 H 0.082 0.918 46 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.792 -22.383 -6.135 25.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.366 5.366 3 C 0.306 3.694 4 O -0.468 6.468 5 C -0.086 4.086 6 C -0.196 4.196 7 C -0.199 4.199 8 C 0.025 3.975 9 N -0.370 5.370 10 C 0.302 3.698 11 O -0.458 6.458 12 C -0.106 4.106 13 C -0.192 4.192 14 C -0.099 4.099 15 C -0.271 4.271 16 C -0.116 4.116 17 C -0.267 4.267 18 C 0.082 3.918 19 C -0.569 4.569 20 H 0.087 0.913 21 C -0.211 4.211 22 N -0.443 5.443 23 Si 0.923 3.077 24 H -0.193 1.193 25 H -0.206 1.206 26 H -0.173 1.173 27 H 0.064 0.936 28 H 0.066 0.934 29 H 0.135 0.865 30 H 0.258 0.742 31 H 0.104 0.896 32 H 0.117 0.883 33 H 0.070 0.930 34 H 0.064 0.936 35 H 0.119 0.881 36 H 0.102 0.898 37 H 0.054 0.946 38 H 0.063 0.937 39 H 0.255 0.745 40 H 0.137 0.863 41 H 0.118 0.882 42 H 0.139 0.861 43 H 0.137 0.863 44 H 0.127 0.873 45 H 0.101 0.899 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -11.508 -20.614 -4.518 24.038 hybrid contribution 0.169 0.080 -1.571 1.582 sum -11.339 -20.534 -6.089 24.235 Atomic orbital electron populations 1.21695 0.78786 1.04443 1.01246 1.45632 1.08238 1.08318 1.74444 1.20711 0.90125 0.83822 0.74765 1.90740 1.71315 1.33521 1.51242 1.20911 0.91051 0.95398 1.01258 1.21932 1.03131 1.01026 0.93471 1.21949 1.03065 1.01128 0.93737 1.20829 0.80170 0.95953 1.00582 1.45796 1.06226 1.08647 1.76327 1.21246 0.91055 0.83181 0.74328 1.90688 1.71306 1.33708 1.50062 1.20274 0.89610 0.95703 1.04976 1.19547 1.10466 0.96027 0.93187 1.20827 0.97457 0.94995 0.96587 1.20721 1.12781 0.96663 0.96929 1.20896 0.98975 0.98640 0.93085 1.21154 1.12426 0.96328 0.96745 1.17800 0.89216 0.91153 0.93622 1.20546 1.23966 1.19246 0.93183 0.91298 1.28183 0.94716 0.90719 1.07458 1.70549 1.10283 1.30904 1.32564 0.83160 0.74959 0.78999 0.70549 1.19268 1.20594 1.17284 0.93605 0.93387 0.86499 0.74167 0.89597 0.88306 0.93023 0.93567 0.88144 0.89802 0.94585 0.93677 0.74537 0.86327 0.88249 0.86124 0.86343 0.87347 0.89944 0.90347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.92 10.70 127.77 1.37 2.29 16 2 N -0.71 -8.78 5.50 -484.50 -2.66 -11.44 16 3 C 0.52 11.42 6.48 87.66 0.57 11.99 16 4 O -0.59 -19.89 15.98 -3.02 -0.05 -19.94 16 5 C -0.08 -1.49 0.63 -52.93 -0.03 -1.52 16 6 C -0.14 -1.52 8.20 71.98 0.59 -0.93 16 7 C -0.14 -1.84 8.20 71.98 0.59 -1.25 16 8 C 0.15 4.44 3.85 86.38 0.33 4.77 16 9 N -0.71 -19.97 4.96 -463.07 -2.30 -22.26 16 10 C 0.51 20.34 7.46 87.66 0.65 21.00 16 11 O -0.58 -30.14 16.03 -3.04 -0.05 -30.19 16 12 C -0.07 -2.50 5.18 29.10 0.15 -2.35 16 13 C -0.19 -9.24 4.43 -19.40 -0.09 -9.33 16 14 C -0.08 -3.64 9.66 22.22 0.21 -3.43 16 15 C -0.25 -11.54 10.05 22.46 0.23 -11.31 16 16 C -0.10 -4.85 10.02 22.22 0.22 -4.63 16 17 C -0.25 -13.84 7.95 22.73 0.18 -13.66 16 18 C 0.08 4.71 5.30 -21.29 -0.11 4.60 16 19 C -0.54 -29.84 8.08 23.46 0.19 -29.65 16 20 H 0.07 3.72 6.73 -2.91 -0.02 3.70 16 21 C 0.01 0.29 4.94 85.25 0.42 0.71 16 22 N -0.82 -45.58 12.31 21.82 0.27 -45.31 16 23 Si 1.11 45.68 30.00 68.60 2.06 47.74 16 24 H -0.27 -10.73 7.11 99.48 0.71 -10.02 16 25 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 26 H -0.25 -9.09 7.11 99.48 0.71 -8.38 16 27 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.12 0.33 8.14 -2.39 -0.02 0.32 16 30 H 0.42 1.75 7.67 -92.71 -0.71 1.04 16 31 H 0.09 0.75 6.86 -2.38 -0.02 0.73 16 32 H 0.10 0.40 7.56 -2.39 -0.02 0.38 16 33 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.10 0.55 7.56 -2.39 -0.02 0.53 16 36 H 0.08 0.94 6.86 -2.39 -0.02 0.92 16 37 H 0.04 1.34 8.10 -2.39 -0.02 1.32 16 38 H 0.04 1.57 8.10 -2.39 -0.02 1.55 16 39 H 0.42 7.74 6.16 -92.71 -0.57 7.17 16 40 H 0.12 3.39 8.05 -2.39 -0.02 3.37 16 41 H 0.10 3.69 7.06 -2.39 -0.02 3.67 16 42 H 0.12 4.54 8.06 -2.91 -0.02 4.51 16 43 H 0.12 4.61 8.06 -2.91 -0.02 4.59 16 44 H 0.11 4.77 8.06 -2.91 -0.02 4.74 16 45 H 0.08 4.85 6.49 -2.91 -0.02 4.83 16 46 H 0.28 16.40 6.68 -92.71 -0.62 15.78 16 Total: -1.00 -84.13 376.02 2.62 -81.52 By element: Atomic # 1 Polarization: 32.70 SS G_CDS: -0.13 Total: 32.57 kcal Atomic # 6 Polarization: -38.17 SS G_CDS: 5.48 Total: -32.69 kcal Atomic # 7 Polarization: -74.32 SS G_CDS: -4.69 Total: -79.01 kcal Atomic # 8 Polarization: -50.03 SS G_CDS: -0.10 Total: -50.13 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 2.06 Total: 47.74 kcal Total: -84.13 2.62 -81.52 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777046319.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.571 kcal (2) G-P(sol) polarization free energy of solvation -84.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds