Wall clock time and date at job start Tue Mar 31 2020 12:29:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50703 * 119.99801 * 2 1 4 4 C 1.52998 * 109.46610 * 124.99932 * 3 2 1 5 5 N 1.46903 * 109.47034 * 179.97438 * 4 3 2 6 6 C 1.46897 * 111.00230 * 171.05008 * 5 4 3 7 7 C 1.50700 * 109.46906 * 298.95677 * 6 5 4 8 8 O 1.21284 * 120.00017 * 359.97438 * 7 6 5 9 9 N 1.34779 * 120.00111 * 180.02562 * 7 6 5 10 10 C 1.46497 * 120.00395 * 179.97438 * 9 7 6 11 11 C 1.50693 * 109.47362 * 179.97438 * 10 9 7 12 12 H 1.08001 * 120.00004 * 359.97438 * 11 10 9 13 13 C 1.37879 * 120.00270 * 179.97438 * 11 10 9 14 14 N 1.31517 * 120.00261 * 179.97438 * 13 11 10 15 15 Si 1.86805 * 119.99785 * 0.02562 * 13 11 10 16 16 H 1.48495 * 109.47157 * 89.99788 * 15 13 11 17 17 H 1.48505 * 109.47070 * 209.99934 * 15 13 11 18 18 H 1.48504 * 109.47102 * 329.99860 * 15 13 11 19 19 O 1.46303 * 111.00084 * 295.00536 * 5 4 3 20 20 C 1.42893 * 113.99895 * 116.04500 * 19 5 4 21 21 C 1.50707 * 109.47070 * 179.97438 * 20 19 5 22 22 C 1.38238 * 119.99792 * 89.99993 * 21 20 19 23 23 C 1.38235 * 119.99712 * 179.97438 * 22 21 20 24 24 C 1.38234 * 120.00220 * 359.97124 * 23 22 21 25 25 C 1.38233 * 120.00037 * 0.28719 * 24 23 22 26 26 C 1.38234 * 120.00179 * 269.97930 * 21 20 19 27 27 H 1.08007 * 120.00203 * 179.97438 * 1 2 3 28 28 H 1.07998 * 120.00487 * 359.97438 * 1 2 3 29 29 H 1.08000 * 120.00048 * 180.02562 * 2 1 3 30 30 H 1.08998 * 109.47284 * 5.00691 * 3 2 1 31 31 H 1.08998 * 109.47533 * 245.00061 * 3 2 1 32 32 H 1.09005 * 109.47298 * 60.00449 * 4 3 2 33 33 H 1.08998 * 109.47706 * 299.99963 * 4 3 2 34 34 H 1.09002 * 109.47314 * 58.95394 * 6 5 4 35 35 H 1.08997 * 109.47349 * 178.95876 * 6 5 4 36 36 H 0.96997 * 119.99911 * 359.97438 * 9 7 6 37 37 H 1.09002 * 109.46807 * 299.99919 * 10 9 7 38 38 H 1.09000 * 109.47255 * 59.99730 * 10 9 7 39 39 H 0.96999 * 119.99597 * 180.02562 * 14 13 11 40 40 H 1.09005 * 109.47744 * 60.00184 * 20 19 5 41 41 H 1.09000 * 109.47353 * 299.99384 * 20 19 5 42 42 H 1.08005 * 120.00068 * 359.97438 * 22 21 20 43 43 H 1.07999 * 119.99770 * 179.97438 * 23 22 21 44 44 H 1.08002 * 119.99744 * 180.02562 * 24 23 22 45 45 H 1.07998 * 120.00395 * 179.72811 * 25 24 23 46 46 H 1.07999 * 119.99968 * 359.97438 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 3.0349 1.3330 1.1817 5 7 3.7699 2.6050 1.1814 6 6 4.5547 2.7598 2.4135 7 6 3.6284 2.7616 3.6021 8 8 2.4321 2.6457 3.4389 9 7 4.1291 2.8929 4.8466 10 6 3.2286 2.8951 6.0021 11 6 4.0337 3.0538 7.2660 12 1 5.1087 3.1436 7.2139 13 6 3.3979 3.0844 8.4891 14 7 4.1006 3.2224 9.5923 15 14 1.5386 2.9284 8.5794 16 1 1.1674 1.4958 8.7013 17 1 1.0363 3.6723 9.7625 18 1 0.9340 3.4933 7.3462 19 8 4.6235 2.7171 -0.0015 20 6 4.2619 3.7844 -0.8801 21 6 5.2027 3.8067 -2.0573 22 6 4.9048 3.0785 -3.1939 23 6 5.7675 3.0994 -4.2739 24 6 6.9277 3.8488 -4.2174 25 6 7.2281 4.5727 -3.0787 26 6 6.3632 4.5556 -2.0005 27 1 -0.5401 -0.9354 -0.0004 28 1 -0.5401 0.9352 0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 1.3585 2.1317 0.0897 31 1 2.6212 1.4027 -0.9313 32 1 3.7399 0.5065 1.0921 33 1 2.4772 1.2355 2.1130 34 1 5.2584 1.9322 2.5025 35 1 5.1032 3.7011 2.3790 36 1 5.0857 2.9859 4.9771 37 1 2.5250 3.7228 5.9127 38 1 2.6800 1.9539 6.0370 39 1 3.6533 3.2436 10.4527 40 1 4.3263 4.7325 -0.3461 41 1 3.2415 3.6347 -1.2330 42 1 3.9981 2.4933 -3.2382 43 1 5.5350 2.5302 -5.1617 44 1 7.6014 3.8654 -5.0613 45 1 8.1367 5.1547 -3.0329 46 1 6.5955 5.1250 -1.1128 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000782668721.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:02 Heat of formation + Delta-G solvation = 13.208897 kcal Electronic energy + Delta-G solvation = -25736.094970 eV Core-core repulsion = 22014.322120 eV Total energy + Delta-G solvation = -3721.772850 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.56889 -39.31413 -37.30444 -35.42893 -34.44059 -33.61285 -32.42233 -31.47341 -31.16052 -29.81280 -28.04058 -26.24854 -24.94105 -22.83447 -22.50418 -21.61322 -21.44792 -20.01223 -19.75172 -17.59005 -17.12402 -16.90834 -16.17811 -15.84391 -15.54260 -15.37553 -15.33744 -15.15416 -14.54348 -14.47296 -14.10606 -13.87617 -13.70398 -13.35480 -13.24041 -12.96115 -12.84151 -12.78645 -12.46750 -12.34831 -11.92682 -11.70861 -11.33490 -11.23412 -11.08700 -11.04983 -10.89550 -10.75272 -10.01299 -9.97202 -9.54756 -9.44888 -9.26311 -9.17714 -9.08333 -8.82092 -8.68278 -8.22092 -6.24800 -4.27625 0.97570 1.14601 2.20245 2.42947 3.07217 3.24473 3.31442 3.39232 3.55323 4.02872 4.30289 4.48693 4.59528 4.70159 4.76936 4.88835 4.98448 5.09805 5.10418 5.11558 5.21253 5.24491 5.29459 5.36536 5.43088 5.44870 5.49730 5.60201 5.68885 5.73694 5.79043 5.87521 6.02019 6.17932 6.19063 6.23616 6.36953 6.57723 6.61142 6.72021 6.74033 6.76738 6.99512 7.01426 7.13636 7.33013 8.06265 8.43225 8.69425 8.82370 9.34643 10.87029 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.014377 B = 0.002646 C = 0.002286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1947.035223 B =10578.161605 C =12246.753176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.151 4.151 3 C -0.083 4.083 4 C 0.034 3.966 5 N -0.340 5.340 6 C 0.020 3.980 7 C 0.506 3.494 8 O -0.541 6.541 9 N -0.700 5.700 10 C 0.222 3.778 11 C -0.545 4.545 12 H 0.080 0.920 13 C 0.078 3.922 14 N -0.891 5.891 15 Si 0.877 3.123 16 H -0.273 1.273 17 H -0.283 1.283 18 H -0.260 1.260 19 O -0.258 6.258 20 C 0.112 3.888 21 C -0.086 4.086 22 C -0.099 4.099 23 C -0.125 4.125 24 C -0.117 4.117 25 C -0.124 4.124 26 C -0.098 4.098 27 H 0.095 0.905 28 H 0.097 0.903 29 H 0.106 0.894 30 H 0.074 0.926 31 H 0.069 0.931 32 H 0.041 0.959 33 H 0.125 0.875 34 H 0.072 0.928 35 H 0.109 0.891 36 H 0.398 0.602 37 H 0.027 0.973 38 H 0.022 0.978 39 H 0.268 0.732 40 H 0.061 0.939 41 H 0.061 0.939 42 H 0.123 0.877 43 H 0.122 0.878 44 H 0.121 0.879 45 H 0.123 0.877 46 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.587 -0.961 -26.774 26.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.169 4.169 3 C -0.121 4.121 4 C -0.093 4.093 5 N -0.108 5.108 6 C -0.111 4.111 7 C 0.290 3.710 8 O -0.420 6.420 9 N -0.349 5.349 10 C 0.100 3.900 11 C -0.583 4.583 12 H 0.098 0.902 13 C -0.126 4.126 14 N -0.528 5.528 15 Si 0.703 3.297 16 H -0.198 1.198 17 H -0.209 1.209 18 H -0.184 1.184 19 O -0.263 6.263 20 C 0.035 3.965 21 C -0.087 4.087 22 C -0.117 4.117 23 C -0.143 4.143 24 C -0.135 4.135 25 C -0.142 4.142 26 C -0.116 4.116 27 H 0.113 0.887 28 H 0.115 0.885 29 H 0.124 0.876 30 H 0.093 0.907 31 H 0.087 0.913 32 H 0.059 0.941 33 H 0.142 0.858 34 H 0.090 0.910 35 H 0.128 0.872 36 H 0.232 0.768 37 H 0.045 0.955 38 H 0.039 0.961 39 H 0.078 0.922 40 H 0.080 0.920 41 H 0.079 0.921 42 H 0.141 0.859 43 H 0.140 0.860 44 H 0.139 0.861 45 H 0.141 0.859 46 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 1.548 -0.766 -26.713 26.769 hybrid contribution 0.166 -0.618 0.377 0.743 sum 1.714 -1.385 -26.336 26.428 Atomic orbital electron populations 1.23845 0.95937 1.01786 1.01270 1.22874 0.96052 0.98247 0.99768 1.20618 0.97931 0.95571 0.97937 1.22825 0.95632 0.88682 1.02178 1.67450 1.15914 1.34921 0.92539 1.22246 0.96267 1.04292 0.88295 1.20003 0.88934 0.77835 0.84226 1.90622 1.15736 1.50161 1.85472 1.46117 1.11713 1.71449 1.05655 1.19519 0.90391 0.96886 0.83183 1.21076 0.95549 1.52757 0.88934 0.90201 1.24798 0.98660 0.93855 0.95298 1.69879 1.36085 1.48878 0.97986 0.86818 0.85466 0.78967 0.78447 1.19845 1.20867 1.18446 1.90719 1.52005 1.52314 1.31212 1.21105 0.96313 0.91324 0.87766 1.19719 0.96113 0.98237 0.94675 1.21105 0.99691 0.97853 0.93034 1.21149 0.94871 0.99654 0.98633 1.21196 0.97132 0.97083 0.98107 1.21166 0.99601 0.99833 0.93627 1.21135 0.93334 0.98596 0.98557 0.88669 0.88473 0.87644 0.90707 0.91256 0.94108 0.85791 0.91016 0.87248 0.76820 0.95501 0.96061 0.92212 0.92050 0.92089 0.85927 0.85996 0.86112 0.85914 0.85757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.04 14.32 29.02 0.42 -1.62 16 2 C -0.15 -1.70 9.52 -36.02 -0.34 -2.04 16 3 C -0.08 -1.02 5.72 -27.88 -0.16 -1.18 16 4 C 0.03 0.49 4.87 -3.82 -0.02 0.47 16 5 N -0.34 -4.91 4.61 -115.06 -0.53 -5.44 16 6 C 0.02 0.29 6.01 -4.98 -0.03 0.26 16 7 C 0.51 9.20 7.48 -10.98 -0.08 9.11 16 8 O -0.54 -11.54 13.96 5.55 0.08 -11.46 16 9 N -0.70 -13.58 5.55 -61.48 -0.34 -13.92 16 10 C 0.22 5.30 4.50 -5.20 -0.02 5.28 16 11 C -0.55 -14.66 9.83 -34.44 -0.34 -15.00 16 12 H 0.08 2.23 7.84 -52.49 -0.41 1.82 16 13 C 0.08 2.17 5.47 -17.82 -0.10 2.07 16 14 N -0.89 -26.17 13.96 55.43 0.77 -25.39 16 15 Si 0.88 21.13 27.47 -169.99 -4.67 16.46 16 16 H -0.27 -6.49 7.11 56.52 0.40 -6.08 16 17 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 18 H -0.26 -6.22 6.54 56.52 0.37 -5.85 16 19 O -0.26 -3.46 10.01 -13.92 -0.14 -3.60 16 20 C 0.11 1.26 6.53 36.01 0.24 1.49 16 21 C -0.09 -0.89 5.51 -104.62 -0.58 -1.47 16 22 C -0.10 -0.93 9.70 -39.58 -0.38 -1.31 16 23 C -0.13 -1.03 10.05 -39.58 -0.40 -1.43 16 24 C -0.12 -0.93 10.05 -39.58 -0.40 -1.32 16 25 C -0.12 -1.04 10.05 -39.58 -0.40 -1.44 16 26 C -0.10 -0.94 9.70 -39.58 -0.38 -1.32 16 27 H 0.09 0.87 8.06 -52.48 -0.42 0.45 16 28 H 0.10 1.02 7.84 -52.49 -0.41 0.61 16 29 H 0.11 1.08 8.06 -52.49 -0.42 0.66 16 30 H 0.07 0.97 7.79 -51.93 -0.40 0.56 16 31 H 0.07 0.80 7.51 -51.93 -0.39 0.41 16 32 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.12 2.08 5.32 -51.93 -0.28 1.80 16 34 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.11 1.36 8.14 -51.93 -0.42 0.94 16 36 H 0.40 6.75 8.32 -40.82 -0.34 6.42 16 37 H 0.03 0.68 7.20 -51.93 -0.37 0.31 16 38 H 0.02 0.53 7.57 -51.93 -0.39 0.14 16 39 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 40 H 0.06 0.67 8.09 -51.93 -0.42 0.25 16 41 H 0.06 0.66 7.79 -51.93 -0.40 0.25 16 42 H 0.12 1.01 8.06 -52.48 -0.42 0.59 16 43 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 44 H 0.12 0.68 8.06 -52.49 -0.42 0.26 16 45 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 46 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 LS Contribution 390.00 15.07 5.88 5.88 Total: -1.00 -31.56 390.00 -9.15 -40.72 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: -7.22 Total: 6.18 kcal Atomic # 6 Polarization: -6.45 SS G_CDS: -2.98 Total: -9.43 kcal Atomic # 7 Polarization: -44.65 SS G_CDS: -0.10 Total: -44.75 kcal Atomic # 8 Polarization: -14.99 SS G_CDS: -0.06 Total: -15.05 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -4.67 Total: 16.46 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -31.56 -9.15 -40.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000782668721.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.924 kcal (2) G-P(sol) polarization free energy of solvation -31.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.715 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds