Wall clock time and date at job start Tue Mar 31 2020 12:29:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50703 * 119.99801 * 2 1 4 4 C 1.52998 * 109.46610 * 124.99932 * 3 2 1 5 5 N 1.46903 * 109.47034 * 179.97438 * 4 3 2 6 6 C 1.46897 * 111.00230 * 171.05008 * 5 4 3 7 7 C 1.50700 * 109.46906 * 298.95677 * 6 5 4 8 8 O 1.21284 * 120.00017 * 359.97438 * 7 6 5 9 9 N 1.34779 * 120.00111 * 180.02562 * 7 6 5 10 10 C 1.46497 * 120.00395 * 179.97438 * 9 7 6 11 11 C 1.50693 * 109.47362 * 179.97438 * 10 9 7 12 12 H 1.08001 * 120.00004 * 359.97438 * 11 10 9 13 13 C 1.37879 * 120.00270 * 179.97438 * 11 10 9 14 14 N 1.31517 * 120.00261 * 179.97438 * 13 11 10 15 15 Si 1.86805 * 119.99785 * 0.02562 * 13 11 10 16 16 H 1.48495 * 109.47157 * 89.99788 * 15 13 11 17 17 H 1.48505 * 109.47070 * 209.99934 * 15 13 11 18 18 H 1.48504 * 109.47102 * 329.99860 * 15 13 11 19 19 O 1.46303 * 111.00084 * 295.00536 * 5 4 3 20 20 C 1.42893 * 113.99895 * 116.04500 * 19 5 4 21 21 C 1.50707 * 109.47070 * 179.97438 * 20 19 5 22 22 C 1.38238 * 119.99792 * 89.99993 * 21 20 19 23 23 C 1.38235 * 119.99712 * 179.97438 * 22 21 20 24 24 C 1.38234 * 120.00220 * 359.97124 * 23 22 21 25 25 C 1.38233 * 120.00037 * 0.28719 * 24 23 22 26 26 C 1.38234 * 120.00179 * 269.97930 * 21 20 19 27 27 H 1.08007 * 120.00203 * 179.97438 * 1 2 3 28 28 H 1.07998 * 120.00487 * 359.97438 * 1 2 3 29 29 H 1.08000 * 120.00048 * 180.02562 * 2 1 3 30 30 H 1.08998 * 109.47284 * 5.00691 * 3 2 1 31 31 H 1.08998 * 109.47533 * 245.00061 * 3 2 1 32 32 H 1.09005 * 109.47298 * 60.00449 * 4 3 2 33 33 H 1.08998 * 109.47706 * 299.99963 * 4 3 2 34 34 H 1.09002 * 109.47314 * 58.95394 * 6 5 4 35 35 H 1.08997 * 109.47349 * 178.95876 * 6 5 4 36 36 H 0.96997 * 119.99911 * 359.97438 * 9 7 6 37 37 H 1.09002 * 109.46807 * 299.99919 * 10 9 7 38 38 H 1.09000 * 109.47255 * 59.99730 * 10 9 7 39 39 H 0.96999 * 119.99597 * 180.02562 * 14 13 11 40 40 H 1.09005 * 109.47744 * 60.00184 * 20 19 5 41 41 H 1.09000 * 109.47353 * 299.99384 * 20 19 5 42 42 H 1.08005 * 120.00068 * 359.97438 * 22 21 20 43 43 H 1.07999 * 119.99770 * 179.97438 * 23 22 21 44 44 H 1.08002 * 119.99744 * 180.02562 * 24 23 22 45 45 H 1.07998 * 120.00395 * 179.72811 * 25 24 23 46 46 H 1.07999 * 119.99968 * 359.97438 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 3.0349 1.3330 1.1817 5 7 3.7699 2.6050 1.1814 6 6 4.5547 2.7598 2.4135 7 6 3.6284 2.7616 3.6021 8 8 2.4321 2.6457 3.4389 9 7 4.1291 2.8929 4.8466 10 6 3.2286 2.8951 6.0021 11 6 4.0337 3.0538 7.2660 12 1 5.1087 3.1436 7.2139 13 6 3.3979 3.0844 8.4891 14 7 4.1006 3.2224 9.5923 15 14 1.5386 2.9284 8.5794 16 1 1.1674 1.4958 8.7013 17 1 1.0363 3.6723 9.7625 18 1 0.9340 3.4933 7.3462 19 8 4.6235 2.7171 -0.0015 20 6 4.2619 3.7844 -0.8801 21 6 5.2027 3.8067 -2.0573 22 6 4.9048 3.0785 -3.1939 23 6 5.7675 3.0994 -4.2739 24 6 6.9277 3.8488 -4.2174 25 6 7.2281 4.5727 -3.0787 26 6 6.3632 4.5556 -2.0005 27 1 -0.5401 -0.9354 -0.0004 28 1 -0.5401 0.9352 0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 1.3585 2.1317 0.0897 31 1 2.6212 1.4027 -0.9313 32 1 3.7399 0.5065 1.0921 33 1 2.4772 1.2355 2.1130 34 1 5.2584 1.9322 2.5025 35 1 5.1032 3.7011 2.3790 36 1 5.0857 2.9859 4.9771 37 1 2.5250 3.7228 5.9127 38 1 2.6800 1.9539 6.0370 39 1 3.6533 3.2436 10.4527 40 1 4.3263 4.7325 -0.3461 41 1 3.2415 3.6347 -1.2330 42 1 3.9981 2.4933 -3.2382 43 1 5.5350 2.5302 -5.1617 44 1 7.6014 3.8654 -5.0613 45 1 8.1367 5.1547 -3.0329 46 1 6.5955 5.1250 -1.1128 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000782668721.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:01 Heat of formation + Delta-G solvation = -5.804037 kcal Electronic energy + Delta-G solvation = -25736.919433 eV Core-core repulsion = 22014.322120 eV Total energy + Delta-G solvation = -3722.597313 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.85717 -40.16825 -38.40639 -36.43275 -36.11224 -34.65356 -34.42052 -32.28235 -31.79113 -31.07779 -29.68727 -27.25386 -26.04114 -24.09228 -23.47172 -23.01248 -22.15948 -21.52207 -20.68511 -19.21079 -18.34484 -17.80753 -17.58053 -16.94482 -16.80782 -16.69451 -16.33538 -16.04971 -16.01255 -15.57642 -15.38020 -14.99872 -14.67450 -14.52320 -14.39785 -14.25787 -14.08878 -13.91353 -13.65077 -13.41520 -13.11999 -13.06300 -12.79407 -12.65532 -12.04552 -11.97652 -11.94773 -11.92862 -11.82811 -11.65934 -10.96196 -10.91465 -10.83801 -10.23534 -9.99015 -9.82225 -9.82101 -9.70449 -8.39775 -6.46922 0.27613 0.50257 1.26180 1.33344 1.36119 1.44598 1.48062 1.61702 2.28196 2.57803 2.90379 2.95760 3.48536 3.87291 3.93582 3.99473 4.02087 4.12926 4.15280 4.22701 4.30015 4.34289 4.37969 4.39995 4.53091 4.62222 4.63557 4.70924 4.78101 4.79248 4.96564 5.02847 5.06749 5.07788 5.11030 5.16232 5.26135 5.47672 5.53829 5.55470 5.61383 5.68021 5.72621 5.88275 5.97868 6.07995 6.09862 6.53966 6.78318 7.14516 7.34047 8.74869 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.014377 B = 0.002646 C = 0.002286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1947.035223 B =10578.161605 C =12246.753176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.163 4.163 3 C -0.074 4.074 4 C 0.037 3.963 5 N -0.353 5.353 6 C 0.030 3.970 7 C 0.509 3.491 8 O -0.572 6.572 9 N -0.700 5.700 10 C 0.235 3.765 11 C -0.547 4.547 12 H 0.060 0.940 13 C 0.026 3.974 14 N -0.931 5.931 15 Si 0.937 3.063 16 H -0.265 1.265 17 H -0.275 1.275 18 H -0.259 1.259 19 O -0.258 6.258 20 C 0.112 3.888 21 C -0.104 4.104 22 C -0.111 4.111 23 C -0.130 4.130 24 C -0.119 4.119 25 C -0.130 4.130 26 C -0.112 4.112 27 H 0.111 0.889 28 H 0.095 0.905 29 H 0.116 0.884 30 H 0.063 0.937 31 H 0.076 0.924 32 H 0.045 0.955 33 H 0.098 0.902 34 H 0.091 0.909 35 H 0.131 0.869 36 H 0.410 0.590 37 H 0.015 0.985 38 H 0.014 0.986 39 H 0.272 0.728 40 H 0.061 0.939 41 H 0.062 0.938 42 H 0.128 0.872 43 H 0.143 0.857 44 H 0.145 0.855 45 H 0.142 0.858 46 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.716 -1.278 -28.949 29.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.182 4.182 3 C -0.112 4.112 4 C -0.091 4.091 5 N -0.120 5.120 6 C -0.101 4.101 7 C 0.295 3.705 8 O -0.452 6.452 9 N -0.351 5.351 10 C 0.111 3.889 11 C -0.585 4.585 12 H 0.078 0.922 13 C -0.175 4.175 14 N -0.570 5.570 15 Si 0.761 3.239 16 H -0.190 1.190 17 H -0.200 1.200 18 H -0.183 1.183 19 O -0.263 6.263 20 C 0.036 3.964 21 C -0.105 4.105 22 C -0.129 4.129 23 C -0.148 4.148 24 C -0.137 4.137 25 C -0.148 4.148 26 C -0.130 4.130 27 H 0.130 0.870 28 H 0.113 0.887 29 H 0.134 0.866 30 H 0.082 0.918 31 H 0.094 0.906 32 H 0.064 0.936 33 H 0.116 0.884 34 H 0.109 0.891 35 H 0.149 0.851 36 H 0.246 0.754 37 H 0.033 0.967 38 H 0.032 0.968 39 H 0.081 0.919 40 H 0.079 0.921 41 H 0.080 0.920 42 H 0.146 0.854 43 H 0.161 0.839 44 H 0.163 0.837 45 H 0.160 0.840 46 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 1.697 -1.083 -28.906 28.976 hybrid contribution 0.208 -0.495 0.947 1.089 sum 1.905 -1.578 -27.959 28.068 Atomic orbital electron populations 1.24023 0.95889 1.02531 1.00216 1.22943 0.96374 0.98151 1.00696 1.20523 0.97393 0.95849 0.97427 1.22711 0.95847 0.88851 1.01656 1.67404 1.16440 1.35100 0.93099 1.22142 0.95258 1.06183 0.86523 1.20588 0.89032 0.76257 0.84578 1.90617 1.17480 1.51196 1.85950 1.45926 1.11863 1.72080 1.05219 1.19106 0.90341 0.95875 0.83586 1.21292 0.95018 1.51861 0.90297 0.92217 1.25607 1.03117 0.93683 0.95065 1.69984 1.38012 1.50330 0.98679 0.85859 0.80126 0.79331 0.78585 1.19010 1.19990 1.18268 1.90710 1.51682 1.53225 1.30732 1.21188 0.96821 0.90649 0.87788 1.19731 0.96596 0.99551 0.94639 1.21287 1.00353 0.98008 0.93260 1.21458 0.94694 0.99669 0.98965 1.21561 0.97277 0.96199 0.98657 1.21464 1.00048 0.99935 0.93382 1.21312 0.93479 0.98844 0.99387 0.87029 0.88696 0.86576 0.91844 0.90571 0.93642 0.88394 0.89138 0.85116 0.75410 0.96711 0.96796 0.91871 0.92107 0.92009 0.85371 0.83909 0.83686 0.83986 0.85337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.82 14.32 67.78 0.97 -2.85 16 2 C -0.16 -3.51 9.52 25.65 0.24 -3.27 16 3 C -0.07 -1.78 5.72 29.85 0.17 -1.61 16 4 C 0.04 1.03 4.87 86.30 0.42 1.45 16 5 N -0.35 -9.87 4.61 -517.93 -2.39 -12.26 16 6 C 0.03 0.80 6.01 85.56 0.51 1.32 16 7 C 0.51 18.21 7.48 87.66 0.66 18.87 16 8 O -0.57 -24.40 13.96 -3.04 -0.04 -24.44 16 9 N -0.70 -26.88 5.55 -466.80 -2.59 -29.47 16 10 C 0.23 11.19 4.50 85.63 0.38 11.57 16 11 C -0.55 -29.68 9.83 25.60 0.25 -29.42 16 12 H 0.06 3.40 7.84 -2.91 -0.02 3.38 16 13 C 0.03 1.43 5.47 84.65 0.46 1.90 16 14 N -0.93 -55.23 13.96 21.45 0.30 -54.93 16 15 Si 0.94 43.55 27.47 68.60 1.88 45.44 16 16 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 17 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 18 H -0.26 -11.85 6.54 99.48 0.65 -11.20 16 19 O -0.26 -6.60 10.01 -50.17 -0.50 -7.11 16 20 C 0.11 2.44 6.53 71.24 0.47 2.90 16 21 C -0.10 -2.04 5.51 -19.86 -0.11 -2.15 16 22 C -0.11 -1.94 9.70 22.27 0.22 -1.72 16 23 C -0.13 -1.86 10.05 22.27 0.22 -1.64 16 24 C -0.12 -1.58 10.05 22.27 0.22 -1.36 16 25 C -0.13 -1.92 10.05 22.27 0.22 -1.69 16 26 C -0.11 -2.00 9.70 22.27 0.22 -1.79 16 27 H 0.11 1.85 8.06 -2.91 -0.02 1.83 16 28 H 0.09 1.93 7.84 -2.91 -0.02 1.91 16 29 H 0.12 2.22 8.06 -2.91 -0.02 2.20 16 30 H 0.06 1.64 7.79 -2.39 -0.02 1.62 16 31 H 0.08 1.69 7.51 -2.39 -0.02 1.67 16 32 H 0.05 1.20 8.14 -2.38 -0.02 1.18 16 33 H 0.10 3.30 5.32 -2.39 -0.01 3.29 16 34 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 35 H 0.13 2.98 8.14 -2.39 -0.02 2.96 16 36 H 0.41 13.68 8.32 -92.71 -0.77 12.91 16 37 H 0.01 0.75 7.20 -2.39 -0.02 0.73 16 38 H 0.01 0.70 7.57 -2.39 -0.02 0.68 16 39 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 40 H 0.06 1.30 8.09 -2.38 -0.02 1.28 16 41 H 0.06 1.30 7.79 -2.39 -0.02 1.29 16 42 H 0.13 1.98 8.06 -2.91 -0.02 1.95 16 43 H 0.14 1.36 8.06 -2.91 -0.02 1.34 16 44 H 0.15 1.17 8.06 -2.91 -0.02 1.14 16 45 H 0.14 1.45 8.06 -2.91 -0.02 1.42 16 46 H 0.13 2.06 8.06 -2.91 -0.02 2.04 16 Total: -1.00 -67.41 390.00 2.33 -65.08 By element: Atomic # 1 Polarization: 27.07 SS G_CDS: 0.13 Total: 27.21 kcal Atomic # 6 Polarization: -15.05 SS G_CDS: 5.53 Total: -9.51 kcal Atomic # 7 Polarization: -91.98 SS G_CDS: -4.68 Total: -96.66 kcal Atomic # 8 Polarization: -31.00 SS G_CDS: -0.54 Total: -31.55 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 1.88 Total: 45.44 kcal Total: -67.41 2.33 -65.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000782668721.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.276 kcal (2) G-P(sol) polarization free energy of solvation -67.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds