Wall clock time and date at job start Tue Mar 31 2020 11:59:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.50705 * 119.99879 * 2 1 4 4 C 1.30997 * 120.00052 * 180.02562 * 2 1 3 5 5 C 1.50699 * 119.99956 * 354.55421 * 4 2 1 6 6 C 1.53001 * 109.46989 * 125.25643 * 5 4 2 7 7 N 1.46500 * 109.47219 * 180.02562 * 6 5 4 8 8 C 1.34771 * 120.00097 * 180.02562 * 7 6 5 9 9 O 1.21588 * 120.00389 * 359.97438 * 8 7 6 10 10 N 1.34778 * 120.00086 * 179.97438 * 8 7 6 11 11 C 1.46503 * 119.99792 * 179.97438 * 10 8 7 12 12 C 1.50707 * 109.46888 * 180.02562 * 11 10 8 13 13 C 1.38299 * 119.92891 * 90.00000 * 12 11 10 14 14 C 1.38103 * 120.06508 * 179.97438 * 13 12 11 15 15 C 1.38878 * 119.93466 * 0.02562 * 14 13 12 16 16 O 1.35747 * 120.07204 * 179.97438 * 15 14 13 17 17 C 1.34829 * 116.99880 * 5.52791 * 16 15 14 18 18 H 1.08004 * 119.99818 * 354.91754 * 17 16 15 19 19 C 1.38657 * 120.00231 * 174.91077 * 17 16 15 20 20 N 1.31558 * 119.99659 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 120.00309 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.46886 * 60.00233 * 21 19 17 23 23 H 1.48495 * 109.47143 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.47401 * 300.00687 * 21 19 17 25 25 C 1.38879 * 119.85957 * 0.27378 * 15 14 13 26 26 C 1.38105 * 119.92885 * 359.44954 * 25 15 14 27 27 H 1.08993 * 109.47408 * 244.81341 * 1 2 3 28 28 H 1.09003 * 109.47495 * 4.81875 * 1 2 3 29 29 H 1.09002 * 109.47004 * 124.81228 * 1 2 3 30 30 H 1.09004 * 109.47243 * 240.00172 * 3 2 1 31 31 H 1.09004 * 109.46708 * 0.02562 * 3 2 1 32 32 H 1.08998 * 109.46799 * 119.99578 * 3 2 1 33 33 H 1.08002 * 119.99896 * 174.56443 * 4 2 1 34 34 H 1.09002 * 109.47410 * 5.25317 * 5 4 2 35 35 H 1.09006 * 109.47010 * 245.25467 * 5 4 2 36 36 H 1.09007 * 109.47187 * 60.00094 * 6 5 4 37 37 H 1.08995 * 109.47119 * 300.00309 * 6 5 4 38 38 H 0.97005 * 119.99977 * 359.97438 * 7 6 5 39 39 H 0.97001 * 119.99829 * 359.97438 * 10 8 7 40 40 H 1.09001 * 109.47060 * 60.00265 * 11 10 8 41 41 H 1.08998 * 109.47373 * 300.00175 * 11 10 8 42 42 H 1.07996 * 119.97011 * 0.02562 * 13 12 11 43 43 H 1.08000 * 120.03217 * 179.97438 * 14 13 12 44 44 H 0.96996 * 119.99815 * 179.97438 * 20 19 17 45 45 H 1.08003 * 120.03544 * 179.71813 * 25 15 14 46 46 H 1.08004 * 119.96224 * 180.27574 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3052 0.0000 4 6 2.1620 -1.1345 -0.0005 5 6 1.4136 -2.4367 0.1228 6 6 1.7830 -3.3500 -1.0478 7 7 1.0550 -4.6157 -0.9284 8 6 1.2245 -5.5805 -1.8540 9 8 1.9813 -5.4004 -2.7884 10 7 0.5552 -6.7451 -1.7438 11 6 0.7391 -7.7937 -2.7503 12 6 -0.1161 -8.9836 -2.3980 13 6 -1.4099 -9.0701 -2.8790 14 6 -2.1958 -10.1594 -2.5584 15 6 -1.6860 -11.1684 -1.7517 16 8 -2.4563 -12.2402 -1.4344 17 6 -3.6651 -12.3218 -2.0260 18 1 -4.0150 -11.5150 -2.6530 19 6 -4.4590 -13.4415 -1.8296 20 7 -4.0328 -14.4241 -1.0656 21 14 -6.1340 -13.5543 -2.6486 22 1 -5.9698 -13.4852 -4.1229 23 1 -6.7783 -14.8412 -2.2827 24 1 -6.9853 -12.4264 -2.1921 25 6 -0.3886 -11.0756 -1.2652 26 6 0.3944 -9.9864 -1.5941 27 1 -0.3634 -0.4373 0.9299 28 1 -0.3634 1.0240 -0.0863 29 1 -0.3633 -0.5867 -0.8438 30 1 2.8871 1.3630 -0.8900 31 1 1.5521 2.1336 0.0005 32 1 2.8871 1.3629 0.8900 33 1 3.2384 -1.1365 -0.0891 34 1 0.3411 -2.2423 0.1076 35 1 1.6816 -2.9223 1.0611 36 1 2.8555 -3.5444 -1.0326 37 1 1.5151 -2.8643 -1.9861 38 1 0.4515 -4.7596 -0.1827 39 1 -0.0483 -6.8890 -0.9981 40 1 1.7867 -8.0935 -2.7754 41 1 0.4464 -7.4133 -3.7289 42 1 -1.8057 -8.2854 -3.5066 43 1 -3.2062 -10.2262 -2.9340 44 1 -4.5883 -15.2072 -0.9279 45 1 0.0092 -11.8564 -0.6339 46 1 1.4050 -9.9159 -1.2196 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000790282285.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:59:44 Heat of formation + Delta-G solvation = -54.355874 kcal Electronic energy + Delta-G solvation = -24568.553142 eV Core-core repulsion = 20843.850463 eV Total energy + Delta-G solvation = -3724.702679 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.14300 -40.66453 -38.60656 -38.09301 -35.89364 -35.54242 -34.27073 -32.24142 -31.81742 -30.92124 -28.63595 -27.77739 -27.09428 -25.80800 -23.63790 -23.18187 -22.19305 -21.92840 -19.89131 -19.55468 -18.82808 -18.60758 -17.41863 -16.92541 -16.45519 -16.35968 -16.02150 -15.89912 -15.64459 -15.46775 -15.30189 -14.92509 -14.82041 -14.63844 -14.53614 -14.36370 -14.13162 -13.65181 -13.31396 -13.26374 -13.01550 -12.89309 -12.72170 -12.54583 -12.52109 -12.36935 -12.23693 -12.15769 -12.12991 -11.68106 -11.36574 -11.19974 -10.79428 -10.35211 -9.81482 -9.71141 -9.56107 -9.01384 -8.47680 -6.16051 0.53369 0.58447 1.23952 1.36297 1.45819 1.52095 1.88278 2.17728 2.18875 2.81445 3.13646 3.45955 3.50534 3.89066 3.92038 4.04354 4.09572 4.14020 4.18332 4.22268 4.47423 4.47918 4.57696 4.60907 4.73413 4.74716 4.81152 4.83290 4.90362 4.94197 5.04837 5.09546 5.10764 5.14891 5.15850 5.25739 5.27446 5.48417 5.53375 5.54688 5.69579 5.76522 5.80556 6.00914 6.01766 6.07221 6.17047 6.97004 7.12926 7.61181 7.76094 8.74792 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.022166 B = 0.001760 C = 0.001688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.903638 B =15906.426065 C =16584.444871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.132 4.132 3 C -0.121 4.121 4 C -0.177 4.177 5 C -0.093 4.093 6 C 0.147 3.853 7 N -0.736 5.736 8 C 0.698 3.302 9 O -0.639 6.639 10 N -0.730 5.730 11 C 0.204 3.796 12 C -0.181 4.181 13 C -0.045 4.045 14 C -0.244 4.244 15 C 0.122 3.878 16 O -0.229 6.229 17 C -0.415 4.415 18 H 0.104 0.896 19 C -0.021 4.021 20 N -0.918 5.918 21 Si 1.017 2.983 22 H -0.258 1.258 23 H -0.273 1.273 24 H -0.256 1.256 25 C -0.204 4.204 26 C -0.043 4.043 27 H 0.072 0.928 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.112 0.888 34 H 0.085 0.915 35 H 0.088 0.912 36 H 0.054 0.946 37 H 0.050 0.950 38 H 0.411 0.589 39 H 0.408 0.592 40 H 0.069 0.931 41 H 0.066 0.934 42 H 0.139 0.861 43 H 0.121 0.879 44 H 0.273 0.727 45 H 0.115 0.885 46 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.350 27.294 3.056 28.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.133 4.133 3 C -0.177 4.177 4 C -0.196 4.196 5 C -0.130 4.130 6 C 0.022 3.978 7 N -0.392 5.392 8 C 0.398 3.602 9 O -0.521 6.521 10 N -0.386 5.386 11 C 0.080 3.920 12 C -0.182 4.182 13 C -0.063 4.063 14 C -0.263 4.263 15 C 0.071 3.929 16 O -0.135 6.135 17 C -0.491 4.491 18 H 0.121 0.879 19 C -0.219 4.219 20 N -0.556 5.556 21 Si 0.837 3.163 22 H -0.183 1.183 23 H -0.197 1.197 24 H -0.181 1.181 25 C -0.224 4.224 26 C -0.061 4.061 27 H 0.091 0.909 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.130 0.870 34 H 0.104 0.896 35 H 0.107 0.893 36 H 0.073 0.927 37 H 0.069 0.931 38 H 0.247 0.753 39 H 0.244 0.756 40 H 0.087 0.913 41 H 0.084 0.916 42 H 0.157 0.843 43 H 0.139 0.861 44 H 0.082 0.918 45 H 0.133 0.867 46 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 9.011 27.074 2.429 28.638 hybrid contribution -1.193 -0.801 0.362 1.482 sum 7.818 26.273 2.791 27.553 Atomic orbital electron populations 1.20946 0.91809 1.02881 1.02291 1.21902 0.96467 0.95471 0.99420 1.20905 1.00096 0.94394 1.02325 1.22456 0.99803 0.93235 1.04098 1.20854 1.01269 0.93292 0.97634 1.21100 0.95763 0.82035 0.98860 1.45035 1.50006 1.15770 1.28405 1.16151 0.80656 0.80789 0.82609 1.90889 1.43429 1.81748 1.36078 1.45232 1.48584 1.14459 1.30315 1.19702 0.98113 0.83491 0.90683 1.19488 0.95474 0.98018 1.05266 1.20937 0.92842 0.95839 0.96684 1.21245 1.02011 0.96937 1.06102 1.19996 0.91645 0.87843 0.93369 1.83945 1.28284 1.39869 1.61430 1.21800 0.91426 1.05959 1.29925 0.87899 1.26571 1.04141 0.93701 0.97443 1.70173 1.39689 1.08088 1.37635 0.84664 0.74625 0.78546 0.78513 1.18281 1.19744 1.18060 1.20446 0.92223 1.02090 1.07600 1.20880 0.99123 0.91247 0.94860 0.90888 0.91457 0.91622 0.91530 0.91300 0.91129 0.87045 0.89619 0.89334 0.92729 0.93113 0.75250 0.75623 0.91282 0.91550 0.84348 0.86149 0.91817 0.86661 0.83527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.14 8.54 71.24 0.61 -0.53 16 2 C -0.13 -1.47 6.05 -16.48 -0.10 -1.57 16 3 C -0.12 -1.07 10.05 71.24 0.72 -0.35 16 4 C -0.18 -2.08 9.15 25.65 0.23 -1.84 16 5 C -0.09 -0.99 5.59 29.85 0.17 -0.83 16 6 C 0.15 2.40 5.66 86.38 0.49 2.88 16 7 N -0.74 -12.59 5.56 -478.54 -2.66 -15.25 16 8 C 0.70 17.36 8.57 179.06 1.53 18.90 16 9 O -0.64 -21.63 16.34 -3.99 -0.07 -21.70 16 10 N -0.73 -16.02 5.55 -482.28 -2.68 -18.70 16 11 C 0.20 5.08 5.80 85.63 0.50 5.57 16 12 C -0.18 -5.21 5.25 -19.83 -0.10 -5.31 16 13 C -0.04 -1.42 9.69 22.25 0.22 -1.20 16 14 C -0.24 -9.97 9.17 22.39 0.21 -9.76 16 15 C 0.12 5.81 6.65 22.58 0.15 5.96 16 16 O -0.23 -13.38 9.76 -22.70 -0.22 -13.60 16 17 C -0.42 -23.49 9.49 67.92 0.64 -22.85 16 18 H 0.10 5.30 5.20 -2.91 -0.02 5.28 16 19 C -0.02 -1.14 5.49 84.83 0.47 -0.68 16 20 N -0.92 -55.26 13.67 21.61 0.30 -54.97 16 21 Si 1.02 41.77 29.55 68.60 2.03 43.80 16 22 H -0.26 -10.01 7.11 99.48 0.71 -9.30 16 23 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 24 H -0.26 -9.83 7.11 99.48 0.71 -9.12 16 25 C -0.20 -8.16 9.99 22.39 0.22 -7.94 16 26 C -0.04 -1.32 9.69 22.25 0.22 -1.10 16 27 H 0.07 0.59 7.86 -2.39 -0.02 0.57 16 28 H 0.07 0.53 7.71 -2.39 -0.02 0.51 16 29 H 0.07 0.66 7.66 -2.39 -0.02 0.64 16 30 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.07 0.50 7.71 -2.38 -0.02 0.48 16 32 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.11 1.28 8.05 -2.91 -0.02 1.26 16 34 H 0.09 0.79 5.80 -2.39 -0.01 0.78 16 35 H 0.09 0.79 8.14 -2.38 -0.02 0.77 16 36 H 0.05 1.02 8.14 -2.38 -0.02 1.00 16 37 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.41 4.54 8.49 -92.70 -0.79 3.75 16 39 H 0.41 7.36 8.48 -92.71 -0.79 6.58 16 40 H 0.07 1.74 8.09 -2.39 -0.02 1.73 16 41 H 0.07 1.71 8.08 -2.39 -0.02 1.69 16 42 H 0.14 3.62 8.06 -2.91 -0.02 3.60 16 43 H 0.12 5.03 5.64 -2.91 -0.02 5.02 16 44 H 0.27 15.09 8.31 -92.71 -0.77 14.32 16 45 H 0.12 4.58 8.06 -2.91 -0.02 4.56 16 46 H 0.15 3.59 8.06 -2.91 -0.02 3.57 16 Total: -1.00 -73.74 388.52 2.29 -71.45 By element: Atomic # 1 Polarization: 30.19 SS G_CDS: -0.57 Total: 29.62 kcal Atomic # 6 Polarization: -26.81 SS G_CDS: 6.16 Total: -20.65 kcal Atomic # 7 Polarization: -83.88 SS G_CDS: -5.04 Total: -88.92 kcal Atomic # 8 Polarization: -35.01 SS G_CDS: -0.29 Total: -35.30 kcal Atomic # 14 Polarization: 41.77 SS G_CDS: 2.03 Total: 43.80 kcal Total: -73.74 2.29 -71.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000790282285.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.094 kcal (2) G-P(sol) polarization free energy of solvation -73.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds