Wall clock time and date at job start Tue Mar 31 2020 12:13:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.46947 * 2 1 4 4 C 1.52997 * 109.47063 * 119.99621 * 2 1 3 5 5 C 1.50705 * 109.47067 * 65.00031 * 4 2 1 6 6 O 1.21285 * 119.99565 * 0.02562 * 5 4 2 7 7 N 1.34766 * 120.00194 * 179.97438 * 5 4 2 8 8 N 1.40104 * 120.00193 * 179.97438 * 7 5 4 9 9 C 1.34777 * 119.99935 * 179.97438 * 8 7 5 10 10 O 1.21283 * 120.00046 * 0.02562 * 9 8 7 11 11 C 1.50698 * 119.99686 * 180.02562 * 9 8 7 12 12 C 1.53005 * 109.46990 * 180.02562 * 11 9 8 13 13 H 1.08994 * 109.46934 * 305.97546 * 12 11 9 14 14 C 1.50700 * 109.47299 * 65.97885 * 12 11 9 15 15 H 1.08008 * 119.99531 * 26.90748 * 14 12 11 16 16 C 1.37869 * 120.00160 * 206.90965 * 14 12 11 17 17 N 1.31508 * 120.00032 * 353.27812 * 16 14 12 18 18 Si 1.86806 * 120.00073 * 173.54969 * 16 14 12 19 19 H 1.48497 * 109.46895 * 179.72442 * 18 16 14 20 20 H 1.48495 * 109.46957 * 299.72695 * 18 16 14 21 21 H 1.48501 * 109.46761 * 59.72686 * 18 16 14 22 22 C 1.50705 * 109.47056 * 185.97689 * 12 11 9 23 23 C 1.38237 * 120.00118 * 294.44966 * 22 12 11 24 24 C 1.38237 * 119.99818 * 179.78603 * 23 22 12 25 25 C 1.38236 * 120.00003 * 0.44191 * 24 23 22 26 26 C 1.38236 * 119.99991 * 359.81061 * 25 24 23 27 27 C 1.38228 * 119.99825 * 114.71859 * 22 12 11 28 28 H 1.09001 * 109.47011 * 59.99826 * 1 2 3 29 29 H 1.09000 * 109.47523 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47307 * 300.00221 * 1 2 3 31 31 H 1.08999 * 109.47178 * 240.00316 * 2 1 3 32 32 H 1.09001 * 109.47028 * 179.97438 * 3 2 1 33 33 H 1.09001 * 109.47407 * 299.99932 * 3 2 1 34 34 H 1.09004 * 109.47634 * 60.00167 * 3 2 1 35 35 H 1.08998 * 109.47296 * 305.00313 * 4 2 1 36 36 H 1.09005 * 109.47162 * 184.99864 * 4 2 1 37 37 H 0.97002 * 120.00121 * 0.02562 * 7 5 4 38 38 H 0.97002 * 119.99686 * 0.02562 * 8 7 5 39 39 H 1.09000 * 109.47229 * 60.00363 * 11 9 8 40 40 H 1.09003 * 109.47630 * 300.00294 * 11 9 8 41 41 H 0.97008 * 120.00303 * 354.69126 * 17 16 14 42 42 H 1.08005 * 119.99967 * 359.97438 * 23 22 12 43 43 H 1.07999 * 119.99448 * 180.27078 * 24 23 22 44 44 H 1.07997 * 119.99991 * 179.83259 * 25 24 23 45 45 H 1.07993 * 119.99965 * 180.02562 * 26 25 24 46 46 H 1.07999 * 120.00249 * 359.97438 * 27 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6413 -2.1733 1.1890 6 8 1.0117 -2.5903 0.2399 7 7 1.9852 -3.0086 2.1890 8 7 1.6141 -4.3584 2.1333 9 6 1.9586 -5.1939 3.1332 10 8 2.5894 -4.7771 4.0815 11 6 1.5598 -6.6459 3.0729 12 6 2.0704 -7.3673 4.3219 13 1 3.1426 -7.2010 4.4247 14 6 1.3599 -6.8306 5.5377 15 1 0.3697 -6.4097 5.4426 16 6 1.9738 -6.8767 6.7713 17 7 3.1200 -7.5059 6.9123 18 14 1.1738 -6.0518 8.2441 19 1 2.0247 -6.2500 9.4450 20 1 1.0249 -4.5987 7.9772 21 1 -0.1640 -6.6513 8.4809 22 6 1.8011 -8.8446 4.1941 23 6 0.4998 -9.3102 4.1670 24 6 0.2529 -10.6649 4.0454 25 6 1.3073 -11.5547 3.9599 26 6 2.6086 -11.0895 3.9922 27 6 2.8555 -9.7344 4.1095 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 3.1300 1.4425 0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6767 1.9564 0.8900 35 1 1.6053 -0.2616 2.1370 36 1 3.1263 -0.6443 1.2952 37 1 2.4891 -2.6751 2.9479 38 1 1.1099 -4.6918 1.3746 39 1 1.9938 -7.1053 2.1847 40 1 0.4735 -6.7229 3.0278 41 1 3.4954 -8.0024 6.1683 42 1 -0.3239 -8.6153 4.2379 43 1 -0.7639 -11.0282 4.0198 44 1 1.1144 -12.6133 3.8676 45 1 3.4323 -11.7847 3.9251 46 1 3.8722 -9.3710 4.1346 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000792945602.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:13:04 Heat of formation + Delta-G solvation = -39.789194 kcal Electronic energy + Delta-G solvation = -26197.146647 eV Core-core repulsion = 22473.075627 eV Total energy + Delta-G solvation = -3724.071020 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.25994 -39.05435 -38.29473 -36.00149 -34.99460 -34.22561 -31.82111 -31.10164 -30.14674 -29.06711 -27.79506 -27.28895 -25.03249 -23.03028 -21.75444 -21.54896 -20.99718 -20.08943 -19.49782 -17.61773 -17.41074 -16.80227 -16.17466 -15.87557 -15.58318 -15.13375 -14.61772 -14.35770 -14.23623 -14.06116 -13.82273 -13.69726 -13.36071 -12.94556 -12.65282 -12.53768 -12.45728 -12.36907 -12.15676 -11.96400 -11.61872 -11.41578 -11.17842 -11.10293 -10.91850 -10.78956 -10.75377 -10.48071 -10.21422 -10.08518 -10.01438 -9.76808 -9.36226 -8.70477 -8.35783 -8.17319 -8.07805 -7.69361 -6.28373 -3.98405 2.04208 2.15783 2.24236 2.43738 3.25760 3.46750 3.50797 3.67292 4.14315 4.47769 4.56053 4.62878 4.66735 4.73157 5.02590 5.24178 5.30424 5.33695 5.40251 5.47334 5.52937 5.57031 5.59510 5.67853 5.71944 5.75757 5.88830 5.90458 5.95220 6.10277 6.13261 6.25290 6.27484 6.35652 6.55396 6.73502 6.85896 6.92625 6.97742 7.13751 7.19138 7.33064 7.66233 7.81216 7.82159 8.09305 8.14881 8.44979 8.80986 8.90869 9.70761 11.10941 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.014221 B = 0.003044 C = 0.002677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1968.392737 B = 9196.519549 C =10456.647516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.079 4.079 3 C -0.148 4.148 4 C -0.129 4.129 5 C 0.509 3.491 6 O -0.546 6.546 7 N -0.521 5.521 8 N -0.544 5.544 9 C 0.515 3.485 10 O -0.498 6.498 11 C -0.106 4.106 12 C 0.075 3.925 13 H 0.051 0.949 14 C -0.572 4.572 15 H 0.046 0.954 16 C 0.033 3.967 17 N -0.904 5.904 18 Si 1.061 2.939 19 H -0.284 1.284 20 H -0.289 1.289 21 H -0.290 1.290 22 C -0.035 4.035 23 C -0.106 4.106 24 C -0.130 4.130 25 C -0.151 4.151 26 C -0.125 4.125 27 C -0.129 4.129 28 H 0.052 0.948 29 H 0.075 0.925 30 H 0.048 0.952 31 H 0.079 0.921 32 H 0.055 0.945 33 H 0.058 0.942 34 H 0.056 0.944 35 H 0.098 0.902 36 H 0.097 0.903 37 H 0.430 0.570 38 H 0.424 0.576 39 H 0.073 0.927 40 H 0.086 0.914 41 H 0.271 0.729 42 H 0.116 0.884 43 H 0.108 0.892 44 H 0.107 0.893 45 H 0.108 0.892 46 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.610 8.824 -12.431 15.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.098 4.098 3 C -0.206 4.206 4 C -0.170 4.170 5 C 0.295 3.705 6 O -0.423 6.423 7 N -0.267 5.267 8 N -0.296 5.296 9 C 0.303 3.697 10 O -0.367 6.367 11 C -0.148 4.148 12 C 0.055 3.945 13 H 0.069 0.931 14 C -0.609 4.609 15 H 0.065 0.935 16 C -0.173 4.173 17 N -0.539 5.539 18 Si 0.890 3.110 19 H -0.209 1.209 20 H -0.216 1.216 21 H -0.217 1.217 22 C -0.036 4.036 23 C -0.124 4.124 24 C -0.148 4.148 25 C -0.169 4.169 26 C -0.143 4.143 27 C -0.147 4.147 28 H 0.071 0.929 29 H 0.094 0.906 30 H 0.067 0.933 31 H 0.097 0.903 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.116 0.884 36 H 0.115 0.885 37 H 0.271 0.729 38 H 0.265 0.735 39 H 0.091 0.909 40 H 0.104 0.896 41 H 0.083 0.917 42 H 0.134 0.866 43 H 0.126 0.874 44 H 0.125 0.875 45 H 0.126 0.874 46 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -2.342 9.173 -10.742 14.319 hybrid contribution -0.297 -0.429 -1.412 1.505 sum -2.639 8.744 -12.153 15.203 Atomic orbital electron populations 1.21979 0.94652 1.03517 1.01081 1.20856 0.96729 0.95300 0.96904 1.21867 1.00951 0.95680 1.02071 1.21728 1.03312 0.90489 1.01503 1.20937 0.79927 0.87990 0.81597 1.90670 1.40722 1.77693 1.33234 1.44962 1.57210 0.99528 1.24986 1.45489 1.60385 0.97377 1.26396 1.21311 0.79585 0.88149 0.80705 1.90770 1.37876 1.76853 1.31240 1.21655 1.02547 0.89117 1.01456 1.17866 0.98730 0.85966 0.91917 0.93052 1.21549 1.03709 1.42842 0.92829 0.93545 1.25579 0.95381 0.95881 1.00419 1.70738 1.17979 1.29710 1.35490 0.83676 0.75208 0.76115 0.76049 1.20902 1.21561 1.21671 1.20791 0.92391 0.98264 0.92135 1.20934 0.97094 0.94545 0.99806 1.21025 0.98069 0.93898 1.01800 1.20841 0.93107 0.98530 1.04408 1.20969 0.96259 0.95546 1.01499 1.21069 0.98877 0.93043 1.01735 0.92933 0.90631 0.93267 0.90306 0.92589 0.92332 0.92530 0.88403 0.88453 0.72854 0.73488 0.90885 0.89570 0.91736 0.86610 0.87387 0.87535 0.87402 0.87109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.47 8.93 37.16 0.33 -1.14 16 2 C -0.08 -0.68 2.57 -90.62 -0.23 -0.92 16 3 C -0.15 -0.98 9.19 37.16 0.34 -0.64 16 4 C -0.13 -1.11 5.17 -27.88 -0.14 -1.25 16 5 C 0.51 6.34 7.66 -10.99 -0.08 6.26 16 6 O -0.55 -8.23 13.81 5.55 0.08 -8.15 16 7 N -0.52 -7.19 6.26 31.22 0.20 -6.99 16 8 N -0.54 -8.46 6.26 31.22 0.20 -8.26 16 9 C 0.52 9.83 7.70 -10.99 -0.08 9.75 16 10 O -0.50 -11.61 14.86 5.55 0.08 -11.53 16 11 C -0.11 -1.96 4.95 -27.88 -0.14 -2.10 16 12 C 0.07 1.72 1.23 -92.92 -0.11 1.60 16 13 H 0.05 1.34 6.59 -51.93 -0.34 0.99 16 14 C -0.57 -15.08 6.35 -34.44 -0.22 -15.30 16 15 H 0.05 1.23 7.82 -52.48 -0.41 0.82 16 16 C 0.03 0.94 5.45 -17.83 -0.10 0.84 16 17 N -0.90 -26.97 13.56 55.43 0.75 -26.22 16 18 Si 1.06 25.62 29.91 -169.99 -5.08 20.53 16 19 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 20 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 21 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 22 C -0.04 -0.75 4.53 -104.62 -0.47 -1.23 16 23 C -0.11 -2.11 8.90 -39.58 -0.35 -2.46 16 24 C -0.13 -2.29 10.05 -39.58 -0.40 -2.69 16 25 C -0.15 -2.56 10.05 -39.58 -0.40 -2.96 16 26 C -0.12 -2.23 10.05 -39.58 -0.40 -2.63 16 27 C -0.13 -2.62 9.18 -39.58 -0.36 -2.98 16 28 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.07 0.90 5.95 -51.93 -0.31 0.59 16 30 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.08 0.77 7.95 -51.93 -0.41 0.36 16 32 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 34 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 35 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.43 5.66 8.00 -182.59 -1.46 4.20 16 38 H 0.42 5.91 8.00 -182.59 -1.46 4.45 16 39 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 40 H 0.09 1.48 7.96 -51.93 -0.41 1.07 16 41 H 0.27 7.95 6.24 -40.82 -0.25 7.70 16 42 H 0.12 2.25 7.85 -52.48 -0.41 1.84 16 43 H 0.11 1.61 8.06 -52.49 -0.42 1.18 16 44 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16 45 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 46 H 0.11 2.21 7.95 -52.49 -0.42 1.79 16 LS Contribution 381.56 15.07 5.75 5.75 Total: -1.00 -33.37 381.56 -10.20 -43.56 By element: Atomic # 1 Polarization: 18.51 SS G_CDS: -9.34 Total: 9.17 kcal Atomic # 6 Polarization: -15.04 SS G_CDS: -2.82 Total: -17.86 kcal Atomic # 7 Polarization: -42.61 SS G_CDS: 1.14 Total: -41.47 kcal Atomic # 8 Polarization: -19.84 SS G_CDS: 0.16 Total: -19.68 kcal Atomic # 14 Polarization: 25.62 SS G_CDS: -5.08 Total: 20.53 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -33.37 -10.20 -43.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000792945602.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.775 kcal (2) G-P(sol) polarization free energy of solvation -33.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds