Wall clock time and date at job start Tue Mar 31 2020 12:31:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53007 * 109.47064 * 2 1 4 4 C 1.52996 * 109.47323 * 239.99850 * 2 1 3 5 5 N 1.46493 * 109.47222 * 119.99509 * 2 1 3 6 6 C 1.34774 * 120.00102 * 60.00448 * 5 2 1 7 7 O 1.21593 * 119.99933 * 359.97438 * 6 5 2 8 8 C 1.47524 * 120.00278 * 180.02562 * 6 5 2 9 9 C 1.39682 * 120.19649 * 355.01431 * 8 6 5 10 10 C 1.37804 * 119.91785 * 180.02562 * 9 8 6 11 11 C 1.38558 * 120.33130 * 359.97012 * 10 9 8 12 12 C 1.38021 * 120.40709 * 0.02562 * 11 10 9 13 13 C 1.38855 * 120.06763 * 0.02562 * 12 11 10 14 14 N 1.39287 * 120.16337 * 179.97438 * 13 12 11 15 15 C 1.34783 * 120.00045 * 34.93552 * 14 13 12 16 16 O 1.21279 * 119.99770 * 5.27133 * 15 14 13 17 17 C 1.50704 * 119.99965 * 185.27277 * 15 14 13 18 18 C 1.52996 * 109.47003 * 179.97438 * 17 15 14 19 19 C 1.50704 * 109.47003 * 180.02562 * 18 17 15 20 20 H 1.07996 * 119.99912 * 359.97438 * 19 18 17 21 21 C 1.37873 * 119.99894 * 179.97438 * 19 18 17 22 22 N 1.31518 * 119.99926 * 179.97438 * 21 19 18 23 23 Si 1.86807 * 120.00092 * 0.02562 * 21 19 18 24 24 H 1.48498 * 109.46809 * 89.99555 * 23 21 19 25 25 H 1.48499 * 109.46882 * 209.99762 * 23 21 19 26 26 H 1.48495 * 109.46879 * 329.99741 * 23 21 19 27 27 H 1.08995 * 109.47053 * 300.00521 * 1 2 3 28 28 H 1.09001 * 109.46719 * 60.00417 * 1 2 3 29 29 H 1.09000 * 109.46664 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47217 * 180.02562 * 3 2 1 31 31 H 1.09006 * 109.46601 * 299.99995 * 3 2 1 32 32 H 1.08998 * 109.47233 * 59.99166 * 3 2 1 33 33 H 1.08992 * 109.47211 * 299.99800 * 4 2 1 34 34 H 1.09001 * 109.46967 * 59.99934 * 4 2 1 35 35 H 1.09004 * 109.47224 * 179.97438 * 4 2 1 36 36 H 0.97002 * 120.00176 * 240.00439 * 5 2 1 37 37 H 1.07995 * 120.04054 * 359.97438 * 9 8 6 38 38 H 1.08000 * 119.83198 * 180.02562 * 10 9 8 39 39 H 1.08000 * 119.79607 * 180.02562 * 11 10 9 40 40 H 1.08002 * 119.96755 * 179.74456 * 12 11 10 41 41 H 0.97001 * 120.00296 * 214.93162 * 14 13 12 42 42 H 1.09001 * 109.46857 * 299.99982 * 17 15 14 43 43 H 1.09005 * 109.46631 * 59.99503 * 17 15 14 44 44 H 1.09001 * 109.47385 * 299.99764 * 18 17 15 45 45 H 1.08998 * 109.47385 * 59.99715 * 18 17 15 46 46 H 0.97001 * 119.99530 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 2.0184 -0.6905 1.1962 6 6 1.6929 -1.9808 1.4095 7 8 0.9935 -2.5717 0.6094 8 6 2.1842 -2.6760 2.6144 9 6 3.0705 -2.0350 3.4831 10 6 3.5262 -2.6900 4.6066 11 6 3.1091 -3.9826 4.8804 12 6 2.2336 -4.6288 4.0314 13 6 1.7647 -3.9849 2.8940 14 7 0.8815 -4.6353 2.0355 15 6 -0.0414 -5.4822 2.5332 16 8 -0.1666 -5.6056 3.7332 17 6 -0.9176 -6.2758 1.5985 18 6 -1.8700 -7.1529 2.4138 19 6 -2.7458 -7.9470 1.4791 20 1 -2.6345 -7.8367 0.4106 21 6 -3.6890 -8.8141 1.9883 22 7 -4.4537 -9.5067 1.1726 23 14 -3.8819 -9.0043 3.8366 24 1 -4.8783 -8.0218 4.3339 25 1 -4.3460 -10.3803 4.1468 26 1 -2.5748 -8.7617 4.4982 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 3.1300 1.4426 -0.0005 31 1 1.6766 1.9563 -0.8901 32 1 1.6766 1.9564 0.8899 33 1 1.6768 -1.7489 -1.2492 34 1 1.6767 -0.2074 -2.1392 35 1 3.1301 -0.7208 -1.2494 36 1 2.5760 -0.2190 1.8347 37 1 3.3989 -1.0276 3.2740 38 1 4.2111 -2.1929 5.2775 39 1 3.4714 -4.4876 5.7636 40 1 1.9164 -5.6379 4.2495 41 1 0.9305 -4.4788 1.0795 42 1 -1.4954 -5.5935 0.9751 43 1 -0.2947 -6.9076 0.9652 44 1 -1.2919 -7.8352 3.0370 45 1 -2.4928 -6.5215 3.0474 46 1 -5.1175 -10.1166 1.5308 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812928871.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:31:26 Heat of formation + Delta-G solvation = -77.897926 kcal Electronic energy + Delta-G solvation = -26697.473352 eV Core-core repulsion = 22971.749813 eV Total energy + Delta-G solvation = -3725.723539 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -42.04781 -40.87267 -39.30955 -37.50457 -35.85655 -35.54943 -33.71067 -33.41655 -31.43154 -30.78379 -28.23817 -28.19166 -28.04537 -25.10575 -24.41412 -22.83954 -22.04201 -21.22482 -20.49931 -19.26778 -19.07435 -18.22146 -17.75398 -17.03679 -16.74015 -16.28888 -16.23760 -16.05164 -15.66524 -15.50987 -15.03956 -14.86605 -14.72281 -14.62181 -14.52897 -14.29266 -13.70767 -13.48004 -13.29844 -13.02983 -12.99223 -12.97364 -12.90873 -12.53216 -12.50642 -12.18496 -12.10809 -12.02309 -11.96920 -11.80226 -11.50005 -11.45122 -10.93189 -10.80778 -10.58757 -10.22139 -9.92179 -9.17725 -8.33884 -6.37714 -0.21128 0.29424 1.32128 1.33065 1.48647 1.54885 1.84890 2.08884 2.11502 2.33063 2.87027 3.01248 3.61303 3.75578 3.82108 3.94578 4.00849 4.11759 4.14051 4.27293 4.37088 4.38225 4.44131 4.48196 4.70580 4.73611 4.79103 4.86040 4.87460 4.91097 4.96961 5.01872 5.14265 5.23915 5.24745 5.29386 5.37334 5.38572 5.41351 5.46171 5.50284 5.56752 5.60675 5.94328 6.20063 6.37871 6.58338 6.67897 7.05713 7.24708 7.27367 8.82040 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.014129 B = 0.003273 C = 0.002771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1981.324919 B = 8552.242975 C =10101.500879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.166 3.834 3 C -0.148 4.148 4 C -0.162 4.162 5 N -0.703 5.703 6 C 0.563 3.437 7 O -0.566 6.566 8 C -0.189 4.189 9 C -0.056 4.056 10 C -0.138 4.138 11 C -0.070 4.070 12 C -0.160 4.160 13 C 0.185 3.815 14 N -0.660 5.660 15 C 0.515 3.485 16 O -0.557 6.557 17 C -0.115 4.115 18 C 0.009 3.991 19 C -0.532 4.532 20 H 0.047 0.953 21 C 0.013 3.987 22 N -0.943 5.943 23 Si 0.942 3.058 24 H -0.269 1.269 25 H -0.275 1.275 26 H -0.259 1.259 27 H 0.055 0.945 28 H 0.076 0.924 29 H 0.045 0.955 30 H 0.077 0.923 31 H 0.083 0.917 32 H 0.071 0.929 33 H 0.049 0.951 34 H 0.074 0.926 35 H 0.063 0.937 36 H 0.413 0.587 37 H 0.168 0.832 38 H 0.170 0.830 39 H 0.151 0.849 40 H 0.113 0.887 41 H 0.426 0.574 42 H 0.097 0.903 43 H 0.104 0.896 44 H 0.016 0.984 45 H 0.010 0.990 46 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.856 26.522 2.531 35.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.081 3.919 3 C -0.205 4.205 4 C -0.220 4.220 5 N -0.356 5.356 6 C 0.352 3.648 7 O -0.447 6.447 8 C -0.195 4.195 9 C -0.075 4.075 10 C -0.157 4.157 11 C -0.089 4.089 12 C -0.181 4.181 13 C 0.087 3.913 14 N -0.310 5.310 15 C 0.305 3.695 16 O -0.435 6.435 17 C -0.155 4.155 18 C -0.029 4.029 19 C -0.570 4.570 20 H 0.065 0.935 21 C -0.184 4.184 22 N -0.584 5.584 23 Si 0.766 3.234 24 H -0.194 1.194 25 H -0.201 1.201 26 H -0.183 1.183 27 H 0.074 0.926 28 H 0.095 0.905 29 H 0.064 0.936 30 H 0.096 0.904 31 H 0.101 0.899 32 H 0.090 0.910 33 H 0.068 0.932 34 H 0.093 0.907 35 H 0.082 0.918 36 H 0.252 0.748 37 H 0.186 0.814 38 H 0.187 0.813 39 H 0.169 0.831 40 H 0.131 0.869 41 H 0.270 0.730 42 H 0.115 0.885 43 H 0.122 0.878 44 H 0.034 0.966 45 H 0.028 0.972 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 22.086 25.890 2.696 34.137 hybrid contribution -0.618 -0.651 0.258 0.934 sum 21.468 25.239 2.953 33.266 Atomic orbital electron populations 1.22226 0.95389 1.02277 1.02448 1.20474 0.93600 0.93398 0.84392 1.22053 1.02420 0.91955 1.04095 1.22199 1.01301 1.01376 0.97164 1.45918 1.53271 1.10635 1.25742 1.18232 0.79298 0.82513 0.84779 1.90569 1.39509 1.66809 1.47817 1.19882 1.06801 0.93089 0.99681 1.21525 0.93258 1.00311 0.92402 1.21480 1.01621 0.94479 0.98075 1.21565 0.93584 0.95549 0.98183 1.21216 0.99746 1.01094 0.96049 1.18102 0.90258 0.90772 0.92138 1.43926 1.31870 1.42852 1.12319 1.21425 0.79860 0.78681 0.89515 1.90630 1.69609 1.65884 1.17350 1.21503 0.97459 0.98520 0.97988 1.19203 0.94114 0.94438 0.95110 1.21390 1.18181 1.23430 0.94028 0.93479 1.25831 0.94977 0.94886 1.02730 1.70031 1.23239 1.28160 1.36941 0.85779 0.79398 0.77787 0.80463 1.19389 1.20075 1.18331 0.92605 0.90543 0.93550 0.90428 0.89854 0.90988 0.93226 0.90676 0.91829 0.74814 0.81426 0.81273 0.83095 0.86914 0.72983 0.88517 0.87782 0.96563 0.97173 0.92267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.05 8.40 71.98 0.60 -2.44 16 2 C 0.17 2.34 1.06 3.61 0.00 2.34 16 3 C -0.15 -0.99 8.59 71.98 0.62 -0.37 16 4 C -0.16 -2.62 8.40 71.98 0.60 -2.01 16 5 N -0.70 -10.21 5.05 -426.06 -2.15 -12.36 16 6 C 0.56 12.94 7.17 86.69 0.62 13.56 16 7 O -0.57 -16.84 10.09 -4.01 -0.04 -16.88 16 8 C -0.19 -4.30 5.89 -19.99 -0.12 -4.42 16 9 C -0.06 -0.78 9.52 22.52 0.21 -0.56 16 10 C -0.14 -1.81 10.02 22.24 0.22 -1.59 16 11 C -0.07 -1.35 10.03 22.29 0.22 -1.12 16 12 C -0.16 -4.60 8.63 22.37 0.19 -4.40 16 13 C 0.18 5.52 6.25 38.60 0.24 5.76 16 14 N -0.66 -22.31 4.69 -302.94 -1.42 -23.73 16 15 C 0.52 20.85 7.55 87.66 0.66 21.51 16 16 O -0.56 -25.66 13.78 -3.03 -0.04 -25.71 16 17 C -0.12 -4.89 5.64 29.85 0.17 -4.72 16 18 C 0.01 0.49 3.33 29.85 0.10 0.59 16 19 C -0.53 -32.05 9.66 25.60 0.25 -31.81 16 20 H 0.05 3.00 7.99 -2.91 -0.02 2.98 16 21 C 0.01 0.82 5.47 84.65 0.46 1.29 16 22 N -0.94 -60.56 13.96 21.45 0.30 -60.26 16 23 Si 0.94 47.82 27.47 68.60 1.88 49.71 16 24 H -0.27 -13.23 7.11 99.48 0.71 -12.52 16 25 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 26 H -0.26 -12.99 6.54 99.48 0.65 -12.34 16 27 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 28 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.05 1.21 6.16 -2.39 -0.01 1.20 16 30 H 0.08 0.32 8.14 -2.39 -0.02 0.30 16 31 H 0.08 0.47 8.14 -2.38 -0.02 0.45 16 32 H 0.07 0.38 8.14 -2.39 -0.02 0.36 16 33 H 0.05 1.14 6.16 -2.39 -0.01 1.13 16 34 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.41 3.10 6.53 -92.71 -0.61 2.49 16 37 H 0.17 0.80 6.44 -2.91 -0.02 0.78 16 38 H 0.17 0.87 8.06 -2.91 -0.02 0.85 16 39 H 0.15 2.14 8.06 -2.91 -0.02 2.11 16 40 H 0.11 3.82 6.54 -2.91 -0.02 3.80 16 41 H 0.43 13.66 6.31 -92.71 -0.59 13.08 16 42 H 0.10 3.96 8.14 -2.39 -0.02 3.94 16 43 H 0.10 4.08 8.14 -2.38 -0.02 4.06 16 44 H 0.02 0.86 7.16 -2.39 -0.02 0.84 16 45 H 0.01 0.54 7.53 -2.39 -0.02 0.52 16 46 H 0.27 16.02 8.31 -92.71 -0.77 15.25 16 Total: -1.00 -80.38 369.93 3.35 -77.03 By element: Atomic # 1 Polarization: 20.86 SS G_CDS: -0.24 Total: 20.61 kcal Atomic # 6 Polarization: -13.48 SS G_CDS: 5.07 Total: -8.41 kcal Atomic # 7 Polarization: -93.07 SS G_CDS: -3.27 Total: -96.35 kcal Atomic # 8 Polarization: -42.50 SS G_CDS: -0.08 Total: -42.59 kcal Atomic # 14 Polarization: 47.82 SS G_CDS: 1.88 Total: 49.71 kcal Total: -80.38 3.35 -77.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812928871.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.869 kcal (2) G-P(sol) polarization free energy of solvation -80.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds