Wall clock time and date at job start Tue Mar 31 2020 12:27:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47029 * 2 1 4 4 C 1.53003 * 109.47633 * 120.00202 * 2 1 3 5 5 N 1.46898 * 109.46908 * 65.43017 * 4 2 1 6 6 C 1.46902 * 111.00127 * 212.68503 * 5 4 2 7 7 C 1.50700 * 109.46677 * 66.04968 * 6 5 4 8 8 H 1.08004 * 120.00508 * 0.02562 * 7 6 5 9 9 C 1.37875 * 119.99726 * 180.02562 * 7 6 5 10 10 N 1.31518 * 120.00300 * 0.02562 * 9 7 6 11 11 Si 1.86805 * 120.00074 * 179.97438 * 9 7 6 12 12 H 1.48497 * 109.46840 * 59.99982 * 11 9 7 13 13 H 1.48499 * 109.47219 * 179.97438 * 11 9 7 14 14 H 1.48503 * 109.46969 * 300.00110 * 11 9 7 15 15 C 1.46906 * 111.00069 * 88.73367 * 5 4 2 16 16 C 1.50696 * 109.46830 * 290.04300 * 15 5 4 17 17 C 1.38281 * 119.90106 * 277.15218 * 16 15 5 18 18 C 1.38317 * 120.26013 * 179.97438 * 17 16 15 19 19 C 1.38393 * 119.87533 * 0.02562 * 18 17 16 20 20 C 1.39400 * 119.86402 * 0.02562 * 19 18 17 21 21 C 1.38291 * 119.90172 * 97.13675 * 16 15 5 22 22 N 1.40213 * 119.27552 * 179.90679 * 20 19 18 23 23 C 1.35082 * 118.98683 * 15.46842 * 22 20 19 24 24 O 1.21297 * 120.13771 * 181.67866 * 23 22 20 25 25 C 1.50764 * 119.72997 * 1.69851 * 23 22 20 26 26 O 1.35979 * 120.66941 * 180.02562 * 19 18 17 27 27 H 1.09002 * 109.46762 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.46758 * 299.99669 * 1 2 3 29 29 H 1.08991 * 109.47195 * 59.99896 * 1 2 3 30 30 H 1.08997 * 109.47140 * 240.00093 * 2 1 3 31 31 H 1.09003 * 109.47190 * 179.97438 * 3 2 1 32 32 H 1.08999 * 109.46958 * 300.00079 * 3 2 1 33 33 H 1.09003 * 109.47081 * 60.00528 * 3 2 1 34 34 H 1.09006 * 109.46578 * 305.43334 * 4 2 1 35 35 H 1.08990 * 109.47405 * 185.43351 * 4 2 1 36 36 H 1.09000 * 109.46925 * 186.04745 * 6 5 4 37 37 H 1.08999 * 109.47064 * 306.05121 * 6 5 4 38 38 H 0.97002 * 119.99895 * 179.97438 * 10 9 7 39 39 H 1.08991 * 109.47195 * 170.03976 * 15 5 4 40 40 H 1.09008 * 109.46501 * 50.03682 * 15 5 4 41 41 H 1.08000 * 119.86842 * 359.96211 * 17 16 15 42 42 H 1.08000 * 120.05790 * 180.28568 * 18 17 16 43 43 H 1.07995 * 120.09102 * 359.97438 * 21 16 15 44 44 H 0.97006 * 120.50679 * 195.48033 * 22 20 19 45 45 H 1.08997 * 109.44034 * 208.62228 * 25 23 22 46 46 H 1.08997 * 109.41428 * 88.70603 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 1.6604 -2.1389 1.1854 6 6 1.4030 -2.6760 2.5283 7 6 0.1868 -2.0051 3.1128 8 1 -0.3423 -1.2551 2.5436 9 6 -0.2505 -2.3487 4.3744 10 7 0.3940 -3.2616 5.0679 11 14 -1.7577 -1.5166 5.0994 12 1 -2.9328 -1.7759 4.2294 13 1 -2.0181 -2.0596 6.4569 14 1 -1.5207 -0.0533 5.1881 15 6 2.6865 -2.9280 0.4907 16 6 2.6836 -2.5767 -0.9748 17 6 1.7735 -3.1767 -1.8256 18 6 1.7639 -2.8594 -3.1719 19 6 2.6689 -1.9382 -3.6695 20 6 3.5870 -1.3341 -2.8119 21 6 3.5908 -1.6550 -1.4646 22 7 4.4996 -0.4040 -3.3296 23 6 4.2762 0.1205 -4.5542 24 8 5.0679 0.9037 -5.0349 25 6 3.0385 -0.2711 -5.3208 26 8 2.6734 -1.6139 -4.9900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5138 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 3.1300 1.4425 0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6767 1.9563 0.8901 34 1 1.5995 -0.2667 2.1366 35 1 3.1257 -0.6378 1.2991 36 1 1.2293 -3.7500 2.4629 37 1 2.2654 -2.4855 3.1672 38 1 0.0865 -3.5030 5.9557 39 1 2.4712 -3.9897 0.6103 40 1 3.6654 -2.7056 0.9157 41 1 1.0676 -3.8961 -1.4375 42 1 1.0487 -3.3265 -3.8327 43 1 4.3003 -1.1870 -0.7984 44 1 5.2797 -0.1414 -2.8162 45 1 3.2373 -0.2024 -6.3903 46 1 2.2222 0.4022 -5.0594 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000816481461.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:27:56 Heat of formation + Delta-G solvation = -44.781948 kcal Electronic energy + Delta-G solvation = -27680.068213 eV Core-core repulsion = 23955.780691 eV Total energy + Delta-G solvation = -3724.287522 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.57508 -39.29466 -38.26463 -36.79353 -35.28107 -34.04207 -32.62222 -31.04010 -29.93817 -28.42246 -27.01309 -26.63467 -25.95954 -24.16202 -23.00212 -22.53548 -20.75427 -19.63359 -19.36995 -18.92098 -17.89040 -17.07326 -16.38160 -16.18411 -15.48816 -15.12646 -15.05413 -14.75821 -14.54481 -14.31028 -14.19793 -13.93860 -13.51620 -13.42846 -13.19180 -12.87827 -12.52515 -12.32045 -11.94494 -11.77237 -11.59642 -11.55123 -11.29441 -11.20933 -10.98227 -10.86771 -10.73627 -10.70345 -10.36068 -10.34627 -10.11098 -9.85341 -9.77606 -9.25719 -8.51339 -8.46241 -7.96034 -7.31456 -6.05925 -4.06731 1.00761 1.22273 2.11106 2.55707 3.10861 3.30901 3.35568 3.38130 3.66162 3.77819 4.40156 4.51592 4.65748 4.83369 4.87795 4.99516 5.16708 5.26605 5.30034 5.41679 5.43994 5.47908 5.59284 5.72904 5.84751 5.91967 5.96575 6.05489 6.10105 6.16355 6.23664 6.31993 6.32479 6.46903 6.53945 6.60781 6.62121 6.64457 6.72668 6.94821 7.03282 7.16247 7.24149 7.30419 7.53850 7.78782 8.03879 8.15599 8.49529 9.01566 9.57579 11.04810 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.021929 B = 0.003413 C = 0.003273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.551183 B = 8201.027472 C = 8551.902312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.099 4.099 3 C -0.144 4.144 4 C 0.066 3.934 5 N -0.525 5.525 6 C 0.194 3.806 7 C -0.505 4.505 8 H 0.066 0.934 9 C 0.056 3.944 10 N -0.899 5.899 11 Si 0.895 3.105 12 H -0.276 1.276 13 H -0.289 1.289 14 H -0.278 1.278 15 C 0.088 3.912 16 C -0.044 4.044 17 C -0.085 4.085 18 C -0.107 4.107 19 C 0.065 3.935 20 C 0.085 3.915 21 C -0.112 4.112 22 N -0.656 5.656 23 C 0.491 3.509 24 O -0.521 6.521 25 C 0.051 3.949 26 O -0.304 6.304 27 H 0.071 0.929 28 H 0.047 0.953 29 H 0.030 0.970 30 H 0.075 0.925 31 H 0.043 0.957 32 H 0.045 0.955 33 H 0.052 0.948 34 H 0.082 0.918 35 H 0.018 0.982 36 H 0.031 0.969 37 H -0.010 1.010 38 H 0.261 0.739 39 H 0.082 0.918 40 H 0.034 0.966 41 H 0.138 0.862 42 H 0.137 0.863 43 H 0.128 0.872 44 H 0.414 0.586 45 H 0.142 0.858 46 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.107 3.321 -16.759 17.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.118 4.118 3 C -0.202 4.202 4 C -0.062 4.062 5 N -0.249 5.249 6 C 0.069 3.931 7 C -0.544 4.544 8 H 0.085 0.915 9 C -0.145 4.145 10 N -0.539 5.539 11 Si 0.723 3.277 12 H -0.201 1.201 13 H -0.214 1.214 14 H -0.203 1.203 15 C -0.040 4.040 16 C -0.045 4.045 17 C -0.105 4.105 18 C -0.126 4.126 19 C 0.019 3.981 20 C -0.010 4.010 21 C -0.133 4.133 22 N -0.303 5.303 23 C 0.278 3.722 24 O -0.396 6.396 25 C -0.027 4.027 26 O -0.219 6.219 27 H 0.090 0.910 28 H 0.066 0.934 29 H 0.050 0.950 30 H 0.093 0.907 31 H 0.062 0.938 32 H 0.064 0.936 33 H 0.071 0.929 34 H 0.101 0.899 35 H 0.036 0.964 36 H 0.049 0.951 37 H 0.008 0.992 38 H 0.071 0.929 39 H 0.100 0.900 40 H 0.052 0.948 41 H 0.156 0.844 42 H 0.154 0.846 43 H 0.146 0.854 44 H 0.253 0.747 45 H 0.160 0.840 46 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 4.927 3.483 -17.388 18.405 hybrid contribution 0.409 0.860 1.429 1.717 sum 5.335 4.343 -15.959 17.379 Atomic orbital electron populations 1.21648 0.94990 1.02736 0.99446 1.21374 0.96720 0.94297 0.99416 1.21812 0.99945 0.97399 1.01051 1.22116 0.96163 0.89629 0.98290 1.62078 1.39428 1.01155 1.22238 1.19765 0.95794 0.95773 0.81754 1.21144 1.11262 1.22164 0.99822 0.91543 1.24967 0.97151 0.95318 0.97068 1.69944 1.40262 1.31575 1.12100 0.86613 0.83355 0.79651 0.78116 1.20142 1.21442 1.20335 1.21116 0.94679 0.99283 0.88918 1.19807 0.93748 0.94494 0.96489 1.20945 0.98108 1.00068 0.91344 1.20513 0.97356 0.99070 0.95613 1.18517 0.97263 1.00115 0.82202 1.17913 0.93804 0.95546 0.93704 1.20500 1.01246 0.99810 0.91772 1.43691 1.26222 1.41864 1.18521 1.21554 0.88799 0.80374 0.81431 1.90802 1.46881 1.34128 1.67835 1.23140 0.94143 0.83757 1.01698 1.86233 1.86204 1.28054 1.21411 0.90996 0.93388 0.95041 0.90700 0.93788 0.93633 0.92892 0.89941 0.96361 0.95142 0.99228 0.92900 0.90013 0.94836 0.84430 0.84555 0.85386 0.74670 0.84029 0.88398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.13 8.89 37.16 0.33 -1.80 16 2 C -0.10 -1.51 2.68 -90.62 -0.24 -1.76 16 3 C -0.14 -1.95 9.19 37.16 0.34 -1.60 16 4 C 0.07 1.18 3.93 -3.82 -0.02 1.16 16 5 N -0.53 -9.92 3.86 -237.51 -0.92 -10.84 16 6 C 0.19 4.63 4.68 -4.97 -0.02 4.61 16 7 C -0.51 -13.24 8.13 -34.44 -0.28 -13.52 16 8 H 0.07 1.72 7.33 -52.48 -0.38 1.34 16 9 C 0.06 1.53 5.46 -17.82 -0.10 1.43 16 10 N -0.90 -25.73 13.29 55.43 0.74 -25.00 16 11 Si 0.89 20.98 29.54 -169.99 -5.02 15.96 16 12 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 13 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 14 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 15 C 0.09 1.37 5.04 -4.97 -0.03 1.35 16 16 C -0.04 -0.58 3.69 -104.59 -0.39 -0.96 16 17 C -0.09 -1.04 9.71 -39.54 -0.38 -1.43 16 18 C -0.11 -1.19 10.00 -39.50 -0.39 -1.59 16 19 C 0.07 0.76 6.44 -39.09 -0.25 0.51 16 20 C 0.09 0.99 6.49 -83.49 -0.54 0.44 16 21 C -0.11 -1.34 7.09 -39.46 -0.28 -1.62 16 22 N -0.66 -7.07 5.47 -9.66 -0.05 -7.12 16 23 C 0.49 5.62 7.94 -10.82 -0.09 5.53 16 24 O -0.52 -7.39 17.95 5.54 0.10 -7.29 16 25 C 0.05 0.46 7.17 36.04 0.26 0.71 16 26 O -0.30 -3.34 10.45 -19.67 -0.21 -3.54 16 27 H 0.07 1.29 7.77 -51.93 -0.40 0.89 16 28 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.07 1.10 3.92 -51.93 -0.20 0.90 16 31 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.08 1.70 6.66 -51.93 -0.35 1.35 16 35 H 0.02 0.31 7.58 -51.93 -0.39 -0.09 16 36 H 0.03 0.78 7.88 -51.93 -0.41 0.37 16 37 H -0.01 -0.26 8.12 -51.93 -0.42 -0.68 16 38 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 39 H 0.08 1.27 7.84 -51.93 -0.41 0.86 16 40 H 0.03 0.51 7.68 -51.92 -0.40 0.11 16 41 H 0.14 1.62 8.06 -52.49 -0.42 1.20 16 42 H 0.14 1.27 8.06 -52.49 -0.42 0.85 16 43 H 0.13 1.42 8.05 -52.49 -0.42 1.00 16 44 H 0.41 3.86 8.89 -40.82 -0.36 3.50 16 45 H 0.14 0.94 8.14 -51.93 -0.42 0.51 16 46 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 371.55 15.07 5.60 5.60 Total: -1.00 -29.98 371.55 -8.93 -38.92 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: -7.09 Total: 1.85 kcal Atomic # 6 Polarization: -6.45 SS G_CDS: -2.08 Total: -8.53 kcal Atomic # 7 Polarization: -42.72 SS G_CDS: -0.23 Total: -42.96 kcal Atomic # 8 Polarization: -10.73 SS G_CDS: -0.11 Total: -10.83 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -29.98 -8.93 -38.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000816481461.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.866 kcal (2) G-P(sol) polarization free energy of solvation -29.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds