Wall clock time and date at job start Tue Mar 31 2020 12:27:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47029 * 2 1 4 4 C 1.53003 * 109.47633 * 120.00202 * 2 1 3 5 5 N 1.46898 * 109.46908 * 65.43017 * 4 2 1 6 6 C 1.46902 * 111.00127 * 212.68503 * 5 4 2 7 7 C 1.50700 * 109.46677 * 66.04968 * 6 5 4 8 8 H 1.08004 * 120.00508 * 0.02562 * 7 6 5 9 9 C 1.37875 * 119.99726 * 180.02562 * 7 6 5 10 10 N 1.31518 * 120.00300 * 0.02562 * 9 7 6 11 11 Si 1.86805 * 120.00074 * 179.97438 * 9 7 6 12 12 H 1.48497 * 109.46840 * 59.99982 * 11 9 7 13 13 H 1.48499 * 109.47219 * 179.97438 * 11 9 7 14 14 H 1.48503 * 109.46969 * 300.00110 * 11 9 7 15 15 C 1.46906 * 111.00069 * 88.73367 * 5 4 2 16 16 C 1.50696 * 109.46830 * 290.04300 * 15 5 4 17 17 C 1.38281 * 119.90106 * 277.15218 * 16 15 5 18 18 C 1.38317 * 120.26013 * 179.97438 * 17 16 15 19 19 C 1.38393 * 119.87533 * 0.02562 * 18 17 16 20 20 C 1.39400 * 119.86402 * 0.02562 * 19 18 17 21 21 C 1.38291 * 119.90172 * 97.13675 * 16 15 5 22 22 N 1.40213 * 119.27552 * 179.90679 * 20 19 18 23 23 C 1.35082 * 118.98683 * 15.46842 * 22 20 19 24 24 O 1.21297 * 120.13771 * 181.67866 * 23 22 20 25 25 C 1.50764 * 119.72997 * 1.69851 * 23 22 20 26 26 O 1.35979 * 120.66941 * 180.02562 * 19 18 17 27 27 H 1.09002 * 109.46762 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.46758 * 299.99669 * 1 2 3 29 29 H 1.08991 * 109.47195 * 59.99896 * 1 2 3 30 30 H 1.08997 * 109.47140 * 240.00093 * 2 1 3 31 31 H 1.09003 * 109.47190 * 179.97438 * 3 2 1 32 32 H 1.08999 * 109.46958 * 300.00079 * 3 2 1 33 33 H 1.09003 * 109.47081 * 60.00528 * 3 2 1 34 34 H 1.09006 * 109.46578 * 305.43334 * 4 2 1 35 35 H 1.08990 * 109.47405 * 185.43351 * 4 2 1 36 36 H 1.09000 * 109.46925 * 186.04745 * 6 5 4 37 37 H 1.08999 * 109.47064 * 306.05121 * 6 5 4 38 38 H 0.97002 * 119.99895 * 179.97438 * 10 9 7 39 39 H 1.08991 * 109.47195 * 170.03976 * 15 5 4 40 40 H 1.09008 * 109.46501 * 50.03682 * 15 5 4 41 41 H 1.08000 * 119.86842 * 359.96211 * 17 16 15 42 42 H 1.08000 * 120.05790 * 180.28568 * 18 17 16 43 43 H 1.07995 * 120.09102 * 359.97438 * 21 16 15 44 44 H 0.97006 * 120.50679 * 195.48033 * 22 20 19 45 45 H 1.08997 * 109.44034 * 208.62228 * 25 23 22 46 46 H 1.08997 * 109.41428 * 88.70603 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 1.6604 -2.1389 1.1854 6 6 1.4030 -2.6760 2.5283 7 6 0.1868 -2.0051 3.1128 8 1 -0.3423 -1.2551 2.5436 9 6 -0.2505 -2.3487 4.3744 10 7 0.3940 -3.2616 5.0679 11 14 -1.7577 -1.5166 5.0994 12 1 -2.9328 -1.7759 4.2294 13 1 -2.0181 -2.0596 6.4569 14 1 -1.5207 -0.0533 5.1881 15 6 2.6865 -2.9280 0.4907 16 6 2.6836 -2.5767 -0.9748 17 6 1.7735 -3.1767 -1.8256 18 6 1.7639 -2.8594 -3.1719 19 6 2.6689 -1.9382 -3.6695 20 6 3.5870 -1.3341 -2.8119 21 6 3.5908 -1.6550 -1.4646 22 7 4.4996 -0.4040 -3.3296 23 6 4.2762 0.1205 -4.5542 24 8 5.0679 0.9037 -5.0349 25 6 3.0385 -0.2711 -5.3208 26 8 2.6734 -1.6139 -4.9900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5138 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 3.1300 1.4425 0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6767 1.9563 0.8901 34 1 1.5995 -0.2667 2.1366 35 1 3.1257 -0.6378 1.2991 36 1 1.2293 -3.7500 2.4629 37 1 2.2654 -2.4855 3.1672 38 1 0.0865 -3.5030 5.9557 39 1 2.4712 -3.9897 0.6103 40 1 3.6654 -2.7056 0.9157 41 1 1.0676 -3.8961 -1.4375 42 1 1.0487 -3.3265 -3.8327 43 1 4.3003 -1.1870 -0.7984 44 1 5.2797 -0.1414 -2.8162 45 1 3.2373 -0.2024 -6.3903 46 1 2.2222 0.4022 -5.0594 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000816481461.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:27:55 Heat of formation + Delta-G solvation = -63.526216 kcal Electronic energy + Delta-G solvation = -27680.881026 eV Core-core repulsion = 23955.780691 eV Total energy + Delta-G solvation = -3725.100334 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.45343 -40.33920 -39.32734 -37.95840 -36.22324 -35.51503 -34.44453 -32.20826 -30.85696 -29.50383 -28.60413 -27.84290 -27.20194 -25.64213 -24.03340 -23.66586 -22.30838 -20.83340 -20.41264 -19.79317 -18.81970 -18.37686 -17.87455 -17.12627 -16.90291 -16.35500 -16.13129 -15.96209 -15.86108 -15.45023 -15.38215 -14.90829 -14.80578 -14.73800 -14.19222 -14.13854 -13.79033 -13.75315 -13.29352 -13.18568 -12.98166 -12.87777 -12.68168 -12.49942 -12.40608 -12.19281 -12.12226 -11.96771 -11.75277 -11.60914 -11.36049 -11.31875 -11.28187 -10.93955 -10.55682 -9.46775 -8.95251 -8.86019 -8.14766 -6.22256 0.08147 0.28829 1.23864 1.43173 1.44750 1.52307 1.73001 2.28881 2.43305 2.70884 2.96311 3.18395 3.45964 3.64652 3.87548 4.04498 4.09644 4.17628 4.20523 4.28916 4.32440 4.46824 4.55009 4.59686 4.67457 4.77768 4.86433 4.90843 4.95461 5.01064 5.03180 5.14236 5.17762 5.19501 5.27532 5.33143 5.41829 5.45938 5.63181 5.67439 5.70257 5.73252 5.76412 5.77632 6.13869 6.29544 6.43572 6.69191 6.71823 6.95049 7.46636 8.95694 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.021929 B = 0.003413 C = 0.003273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.551183 B = 8201.027472 C = 8551.902312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.090 4.090 3 C -0.140 4.140 4 C 0.071 3.929 5 N -0.524 5.524 6 C 0.209 3.791 7 C -0.511 4.511 8 H 0.067 0.933 9 C 0.003 3.997 10 N -0.935 5.935 11 Si 0.958 3.042 12 H -0.268 1.268 13 H -0.287 1.287 14 H -0.271 1.271 15 C 0.090 3.910 16 C -0.056 4.056 17 C -0.088 4.088 18 C -0.102 4.102 19 C 0.065 3.935 20 C 0.086 3.914 21 C -0.109 4.109 22 N -0.653 5.653 23 C 0.490 3.510 24 O -0.552 6.552 25 C 0.050 3.950 26 O -0.308 6.308 27 H 0.050 0.950 28 H 0.031 0.969 29 H 0.054 0.946 30 H 0.086 0.914 31 H 0.054 0.946 32 H 0.061 0.939 33 H 0.045 0.955 34 H 0.049 0.951 35 H 0.027 0.973 36 H 0.008 0.992 37 H -0.040 1.040 38 H 0.262 0.738 39 H 0.077 0.923 40 H 0.035 0.965 41 H 0.138 0.862 42 H 0.157 0.843 43 H 0.136 0.864 44 H 0.419 0.581 45 H 0.167 0.833 46 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.569 4.523 -18.967 20.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.109 4.109 3 C -0.198 4.198 4 C -0.058 4.058 5 N -0.248 5.248 6 C 0.083 3.917 7 C -0.549 4.549 8 H 0.085 0.915 9 C -0.194 4.194 10 N -0.577 5.577 11 Si 0.783 3.217 12 H -0.193 1.193 13 H -0.213 1.213 14 H -0.196 1.196 15 C -0.038 4.038 16 C -0.057 4.057 17 C -0.107 4.107 18 C -0.121 4.121 19 C 0.019 3.981 20 C -0.009 4.009 21 C -0.130 4.130 22 N -0.300 5.300 23 C 0.278 3.722 24 O -0.430 6.430 25 C -0.027 4.027 26 O -0.222 6.222 27 H 0.069 0.931 28 H 0.050 0.950 29 H 0.073 0.927 30 H 0.104 0.896 31 H 0.073 0.927 32 H 0.080 0.920 33 H 0.064 0.936 34 H 0.067 0.933 35 H 0.045 0.955 36 H 0.026 0.974 37 H -0.023 1.023 38 H 0.070 0.930 39 H 0.095 0.905 40 H 0.054 0.946 41 H 0.156 0.844 42 H 0.175 0.825 43 H 0.153 0.847 44 H 0.259 0.741 45 H 0.185 0.815 46 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 4.391 4.691 -19.614 20.640 hybrid contribution 0.638 0.468 2.032 2.181 sum 5.029 5.160 -17.582 19.001 Atomic orbital electron populations 1.21593 0.95644 1.01422 0.99777 1.21309 0.96036 0.95368 0.98176 1.21771 1.00675 0.95835 1.01534 1.22087 0.96503 0.88776 0.98405 1.62015 1.41433 1.02103 1.19216 1.19401 0.94006 0.94394 0.83942 1.21459 1.11679 1.21809 0.99975 0.91508 1.25790 1.00038 0.95953 0.97644 1.70070 1.41983 1.33152 1.12452 0.85611 0.79977 0.78818 0.77290 1.19338 1.21274 1.19592 1.21099 0.93636 0.98589 0.90485 1.19515 0.95337 0.96097 0.94787 1.21000 0.97837 0.99976 0.91902 1.20668 0.97505 0.98691 0.95247 1.18674 0.96993 0.99813 0.82650 1.17875 0.93923 0.95642 0.93447 1.20487 1.00973 0.99364 0.92213 1.43705 1.26235 1.41448 1.18566 1.22010 0.89141 0.79680 0.81355 1.90794 1.48111 1.35643 1.68479 1.23415 0.93463 0.83095 1.02741 1.86238 1.86059 1.29229 1.20702 0.93105 0.94956 0.92735 0.89570 0.92672 0.91986 0.93571 0.93266 0.95482 0.97424 1.02252 0.92951 0.90488 0.94647 0.84425 0.82510 0.84653 0.74083 0.81547 0.86307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.98 8.89 71.98 0.64 -3.34 16 2 C -0.09 -2.62 2.68 -10.79 -0.03 -2.65 16 3 C -0.14 -3.46 9.19 71.98 0.66 -2.80 16 4 C 0.07 2.51 3.93 86.30 0.34 2.85 16 5 N -0.52 -20.24 3.86 -905.36 -3.50 -23.74 16 6 C 0.21 10.42 4.68 85.56 0.40 10.82 16 7 C -0.51 -27.50 8.13 25.60 0.21 -27.29 16 8 H 0.07 3.52 7.33 -2.91 -0.02 3.50 16 9 C 0.00 0.19 5.46 84.65 0.46 0.65 16 10 N -0.94 -55.02 13.29 21.45 0.28 -54.74 16 11 Si 0.96 43.44 29.54 68.60 2.03 45.47 16 12 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 13 H -0.29 -12.87 7.11 99.48 0.71 -12.16 16 14 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 15 C 0.09 2.82 5.04 85.55 0.43 3.25 16 16 C -0.06 -1.41 3.69 -19.84 -0.07 -1.49 16 17 C -0.09 -2.02 9.71 22.30 0.22 -1.80 16 18 C -0.10 -2.03 10.00 22.33 0.22 -1.80 16 19 C 0.06 1.34 6.44 22.59 0.15 1.48 16 20 C 0.09 1.78 6.49 38.14 0.25 2.03 16 21 C -0.11 -2.41 7.09 22.35 0.16 -2.25 16 22 N -0.65 -12.53 5.47 -302.69 -1.66 -14.19 16 23 C 0.49 9.98 7.94 87.63 0.70 10.67 16 24 O -0.55 -14.66 17.95 -3.08 -0.06 -14.72 16 25 C 0.05 0.73 7.17 71.26 0.51 1.24 16 26 O -0.31 -5.71 10.45 -93.31 -0.98 -6.69 16 27 H 0.05 1.80 7.77 -2.39 -0.02 1.78 16 28 H 0.03 1.08 8.14 -2.39 -0.02 1.07 16 29 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.09 2.35 3.92 -2.39 -0.01 2.34 16 31 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.05 2.08 6.66 -2.38 -0.02 2.06 16 35 H 0.03 0.90 7.58 -2.39 -0.02 0.88 16 36 H 0.01 0.41 7.88 -2.39 -0.02 0.39 16 37 H -0.04 -2.21 8.12 -2.39 -0.02 -2.23 16 38 H 0.26 14.64 8.31 -92.71 -0.77 13.87 16 39 H 0.08 2.46 7.84 -2.39 -0.02 2.44 16 40 H 0.04 1.09 7.68 -2.38 -0.02 1.08 16 41 H 0.14 3.12 8.06 -2.91 -0.02 3.10 16 42 H 0.16 2.43 8.06 -2.91 -0.02 2.41 16 43 H 0.14 2.75 8.05 -2.91 -0.02 2.73 16 44 H 0.42 7.01 8.89 -92.70 -0.82 6.18 16 45 H 0.17 1.58 8.14 -2.39 -0.02 1.57 16 46 H 0.12 1.29 8.14 -2.39 -0.02 1.27 16 Total: -1.00 -65.41 371.55 1.53 -63.88 By element: Atomic # 1 Polarization: 14.99 SS G_CDS: 0.16 Total: 15.15 kcal Atomic # 6 Polarization: -15.67 SS G_CDS: 5.24 Total: -10.43 kcal Atomic # 7 Polarization: -87.80 SS G_CDS: -4.87 Total: -92.67 kcal Atomic # 8 Polarization: -20.38 SS G_CDS: -1.03 Total: -21.41 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.47 kcal Total: -65.41 1.53 -63.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000816481461.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.357 kcal (2) G-P(sol) polarization free energy of solvation -65.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds