Wall clock time and date at job start Tue Mar 31 2020 13:15:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35627 * 119.99512 * 2 1 4 4 C 1.41552 * 120.00128 * 179.97438 * 3 2 1 5 5 O 1.21780 * 119.99794 * 359.97438 * 4 3 2 6 6 N 1.34776 * 120.00617 * 179.97438 * 4 3 2 7 7 C 1.46500 * 120.00365 * 179.97438 * 6 4 3 8 8 C 1.53003 * 109.47030 * 180.02562 * 7 6 4 9 9 C 1.53349 * 109.41694 * 295.12891 * 8 7 6 10 10 C 1.53194 * 109.14721 * 178.67625 * 9 8 7 11 11 N 1.46924 * 108.89447 * 54.57940 * 10 9 8 12 12 C 1.36930 * 120.63300 * 126.34039 * 11 10 9 13 13 H 1.07996 * 120.00049 * 331.82927 * 12 11 10 14 14 C 1.38816 * 120.00324 * 151.82723 * 12 11 10 15 15 N 1.31624 * 119.99356 * 343.06571 * 14 12 11 16 16 Si 1.86793 * 120.00395 * 163.06593 * 14 12 11 17 17 H 1.48500 * 109.46960 * 359.97438 * 16 14 12 18 18 H 1.48494 * 109.47338 * 119.99948 * 16 14 12 19 19 H 1.48503 * 109.47085 * 239.99957 * 16 14 12 20 20 C 1.46929 * 118.73622 * 306.31812 * 11 10 9 21 21 C 1.53036 * 109.45564 * 175.00227 * 8 7 6 22 22 C 1.41604 * 120.00694 * 179.97438 * 2 1 3 23 23 C 1.37944 * 126.10132 * 295.00814 * 22 2 1 24 24 C 1.40314 * 106.52792 * 179.97438 * 23 22 2 25 25 C 1.35153 * 107.20703 * 359.97438 * 24 23 22 26 26 O 1.34027 * 109.03173 * 359.74915 * 25 24 23 27 27 H 1.09000 * 109.46779 * 90.00186 * 1 2 3 28 28 H 1.09001 * 109.46523 * 209.99687 * 1 2 3 29 29 H 1.08999 * 109.47404 * 329.99839 * 1 2 3 30 30 H 1.07999 * 120.00142 * 0.02562 * 3 2 1 31 31 H 0.96997 * 119.99597 * 0.02562 * 6 4 3 32 32 H 1.08994 * 109.46871 * 60.00166 * 7 6 4 33 33 H 1.09000 * 109.46959 * 300.00074 * 7 6 4 34 34 H 1.09000 * 109.45980 * 55.02905 * 8 7 6 35 35 H 1.08999 * 109.68685 * 58.71306 * 9 8 7 36 36 H 1.08997 * 109.47481 * 298.51196 * 9 8 7 37 37 H 1.08999 * 109.58554 * 294.71486 * 10 9 8 38 38 H 1.09001 * 109.58356 * 174.43691 * 10 9 8 39 39 H 0.96997 * 119.99488 * 180.02562 * 15 14 12 40 40 H 1.09002 * 109.58736 * 173.39352 * 20 11 10 41 41 H 1.08995 * 109.58640 * 293.68128 * 20 11 10 42 42 H 1.08993 * 109.50017 * 61.43810 * 21 8 7 43 43 H 1.08996 * 109.50185 * 301.33457 * 21 8 7 44 44 H 1.08004 * 126.74143 * 359.96745 * 23 22 2 45 45 H 1.07999 * 126.40041 * 179.97438 * 24 23 22 46 46 H 1.07998 * 125.48682 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1851 1.1746 0.0000 4 6 3.6006 1.1748 0.0005 5 8 4.2095 0.1202 0.0015 6 7 4.2745 2.3420 0.0000 7 6 5.7395 2.3421 0.0012 8 6 6.2493 3.7846 0.0009 9 6 5.8412 4.4694 -1.3091 10 6 6.3259 5.9225 -1.2888 11 7 7.7707 5.9384 -1.0223 12 6 8.6277 6.5989 -1.8616 13 1 8.3772 6.7170 -2.9054 14 6 9.8184 7.1168 -1.3707 15 7 9.9817 7.2763 -0.0744 16 14 11.1887 7.5874 -2.5496 17 1 10.7584 7.3121 -3.9439 18 1 11.4943 9.0331 -2.4017 19 1 12.4031 6.7907 -2.2403 20 6 8.2784 5.2326 0.1621 21 6 7.7744 3.7862 0.1278 22 6 2.2152 -1.2262 0.0005 23 6 2.2136 -2.1653 1.0110 24 6 3.0464 -3.2112 0.5852 25 6 3.5122 -2.8783 -0.6391 26 8 3.0064 -1.6879 -0.9903 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3632 -0.8900 0.5138 29 1 -0.3634 0.8899 0.5138 30 1 1.6450 2.1099 0.0004 31 1 3.7894 3.1819 -0.0003 32 1 6.1034 1.8275 -0.8881 33 1 6.1021 1.8290 0.8919 34 1 5.8143 4.3237 0.8425 35 1 4.7562 4.4492 -1.4114 36 1 6.2962 3.9459 -2.1499 37 1 5.8036 6.4709 -0.5049 38 1 6.1272 6.3874 -2.2544 39 1 10.8135 7.6385 0.2687 40 1 9.3684 5.2400 0.1525 41 1 7.9175 5.7262 1.0643 42 1 8.2111 3.2690 -0.7264 43 1 8.0635 3.2784 1.0479 44 1 1.6769 -2.1069 1.9464 45 1 3.2730 -4.1137 1.1334 46 1 4.1804 -3.4774 -1.2398 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000828680685.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:15:14 Heat of formation + Delta-G solvation = -8.376600 kcal Electronic energy + Delta-G solvation = -26359.408441 eV Core-core repulsion = 22636.699574 eV Total energy + Delta-G solvation = -3722.708868 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.31105 -40.95355 -39.39637 -36.73626 -36.00198 -34.47939 -33.71416 -32.59987 -31.45323 -29.99932 -29.39610 -27.99362 -25.75773 -24.03598 -23.64216 -22.65117 -22.48265 -21.83394 -20.78856 -20.14305 -18.87921 -18.51317 -17.56660 -16.96092 -16.77972 -16.65425 -16.35266 -15.73117 -15.36872 -15.31739 -15.07854 -14.82498 -14.60269 -14.28984 -14.00465 -13.90902 -13.82107 -13.72645 -13.43961 -13.41764 -13.25883 -13.02291 -12.81086 -12.73746 -12.59877 -12.25215 -11.99928 -11.86058 -11.63454 -11.29512 -11.11314 -10.98474 -10.74618 -10.54839 -10.42149 -9.97085 -8.99345 -8.67606 -7.88188 -5.33060 -0.20850 0.97639 1.44456 1.46827 1.56991 1.76893 2.22302 2.35684 2.50488 2.52335 3.26394 3.70495 3.79951 3.84046 3.89969 3.94806 4.08097 4.17393 4.25736 4.36848 4.50274 4.52816 4.53473 4.68284 4.70659 4.75665 4.79279 4.86816 4.92363 4.96945 4.99910 5.02566 5.12829 5.14425 5.27394 5.28626 5.31631 5.38685 5.44463 5.48968 5.54992 5.65364 5.70770 5.77992 6.28150 6.39505 6.62652 7.15101 7.30137 7.87433 8.38187 9.18199 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.028004 B = 0.002329 C = 0.002252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.634191 B =12022.011594 C =12428.779560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.029 3.971 3 C -0.207 4.207 4 C 0.528 3.472 5 O -0.574 6.574 6 N -0.711 5.711 7 C 0.141 3.859 8 C -0.077 4.077 9 C -0.113 4.113 10 C 0.140 3.860 11 N -0.613 5.613 12 C -0.261 4.261 13 H 0.065 0.935 14 C -0.052 4.052 15 N -0.935 5.935 16 Si 0.965 3.035 17 H -0.268 1.268 18 H -0.291 1.291 19 H -0.291 1.291 20 C 0.178 3.822 21 C -0.122 4.122 22 C 0.009 3.991 23 C -0.208 4.208 24 C -0.225 4.225 25 C -0.047 4.047 26 O -0.169 6.169 27 H 0.096 0.904 28 H 0.081 0.919 29 H 0.104 0.896 30 H 0.177 0.823 31 H 0.414 0.586 32 H 0.050 0.950 33 H 0.056 0.944 34 H 0.078 0.922 35 H 0.086 0.914 36 H 0.047 0.953 37 H 0.020 0.980 38 H 0.051 0.949 39 H 0.249 0.751 40 H 0.050 0.950 41 H 0.000 1.000 42 H 0.048 0.952 43 H 0.067 0.933 44 H 0.161 0.839 45 H 0.165 0.835 46 H 0.220 0.780 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.846 -16.905 1.766 27.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.027 3.973 3 C -0.227 4.227 4 C 0.319 3.681 5 O -0.456 6.456 6 N -0.363 5.363 7 C 0.016 3.984 8 C -0.096 4.096 9 C -0.152 4.152 10 C 0.015 3.985 11 N -0.336 5.336 12 C -0.391 4.391 13 H 0.082 0.918 14 C -0.247 4.247 15 N -0.581 5.581 16 Si 0.793 3.207 17 H -0.192 1.192 18 H -0.218 1.218 19 H -0.218 1.218 20 C 0.052 3.948 21 C -0.162 4.162 22 C -0.041 4.041 23 C -0.227 4.227 24 C -0.244 4.244 25 C -0.116 4.116 26 O -0.064 6.064 27 H 0.114 0.886 28 H 0.100 0.900 29 H 0.123 0.877 30 H 0.194 0.806 31 H 0.252 0.748 32 H 0.068 0.932 33 H 0.075 0.925 34 H 0.096 0.904 35 H 0.105 0.895 36 H 0.066 0.934 37 H 0.038 0.962 38 H 0.070 0.930 39 H 0.059 0.941 40 H 0.069 0.931 41 H 0.018 0.982 42 H 0.066 0.934 43 H 0.085 0.915 44 H 0.179 0.821 45 H 0.183 0.817 46 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -21.226 -17.381 1.552 27.478 hybrid contribution 1.414 0.750 -0.172 1.610 sum -19.812 -16.631 1.380 25.904 Atomic orbital electron populations 1.21071 0.85853 1.05409 1.04557 1.19780 0.97396 0.88173 0.92001 1.22376 0.92621 1.00494 1.07192 1.17697 0.89829 0.83626 0.76941 1.90847 1.71361 1.31941 1.51448 1.45856 1.07127 1.08887 1.74393 1.21165 0.79846 0.96488 1.00861 1.21191 0.95562 0.93964 0.98855 1.21977 1.00608 0.96146 0.96482 1.21074 0.84001 0.95101 0.98371 1.44340 1.02071 1.59056 1.28168 1.19533 1.00350 1.28478 0.90735 0.91778 1.25786 1.02327 0.99466 0.97169 1.70184 1.25755 1.49318 1.12872 0.85245 0.79362 0.77004 0.79087 1.19188 1.21788 1.21775 1.20557 0.98135 0.88670 0.87407 1.21974 0.95254 0.98105 1.00861 1.19942 0.96842 0.96925 0.90396 1.22281 1.05318 0.94337 1.00732 1.21920 1.03047 1.02283 0.97184 1.24636 1.01952 0.86139 0.98864 1.84138 1.49079 1.31740 1.41452 0.88569 0.90016 0.87694 0.80551 0.74833 0.93168 0.92548 0.90388 0.89521 0.93422 0.96227 0.93014 0.94137 0.93135 0.98235 0.93355 0.91468 0.82103 0.81724 0.76316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.96 10.02 71.24 0.71 -0.24 16 2 C 0.03 0.52 5.78 -19.64 -0.11 0.40 16 3 C -0.21 -3.66 9.49 22.48 0.21 -3.44 16 4 C 0.53 13.63 7.53 85.06 0.64 14.27 16 5 O -0.57 -19.65 12.83 17.69 0.23 -19.43 16 6 N -0.71 -16.23 5.26 -472.18 -2.48 -18.71 16 7 C 0.14 3.92 5.06 86.38 0.44 4.36 16 8 C -0.08 -2.32 2.19 -10.66 -0.02 -2.34 16 9 C -0.11 -3.50 5.27 30.78 0.16 -3.34 16 10 C 0.14 5.55 6.50 86.36 0.56 6.11 16 11 N -0.61 -30.71 2.99 -699.08 -2.09 -32.80 16 12 C -0.26 -14.47 9.58 84.04 0.81 -13.66 16 13 H 0.06 3.49 7.88 -2.91 -0.02 3.46 16 14 C -0.05 -2.95 4.92 84.86 0.42 -2.53 16 15 N -0.93 -55.78 11.20 21.65 0.24 -55.54 16 16 Si 0.96 45.39 29.59 68.60 2.03 47.42 16 17 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 18 H -0.29 -13.61 7.11 99.48 0.71 -12.91 16 19 H -0.29 -13.67 7.11 99.48 0.71 -12.97 16 20 C 0.18 8.59 5.30 86.37 0.46 9.05 16 21 C -0.12 -4.57 5.36 30.67 0.16 -4.40 16 22 C 0.01 0.22 4.36 23.03 0.10 0.32 16 23 C -0.21 -4.60 10.90 22.71 0.25 -4.35 16 24 C -0.23 -4.82 10.87 22.06 0.24 -4.58 16 25 C -0.05 -1.09 12.06 67.11 0.81 -0.28 16 26 O -0.17 -4.77 8.94 16.09 0.14 -4.62 16 27 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 28 H 0.08 0.63 8.10 -2.39 -0.02 0.61 16 29 H 0.10 0.40 8.08 -2.39 -0.02 0.38 16 30 H 0.18 1.58 8.06 -2.91 -0.02 1.55 16 31 H 0.41 6.95 7.61 -92.71 -0.71 6.25 16 32 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 35 H 0.09 2.03 7.16 -2.39 -0.02 2.02 16 36 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 38 H 0.05 2.03 7.93 -2.39 -0.02 2.01 16 39 H 0.25 14.38 8.31 -92.71 -0.77 13.61 16 40 H 0.05 2.80 6.06 -2.39 -0.01 2.78 16 41 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 42 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 43 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 44 H 0.16 2.77 8.06 -2.91 -0.02 2.75 16 45 H 0.17 2.61 8.06 -2.91 -0.02 2.59 16 46 H 0.22 3.45 8.06 -2.91 -0.02 3.43 16 Total: -1.00 -75.72 373.96 4.16 -71.56 By element: Atomic # 1 Polarization: 16.52 SS G_CDS: 0.26 Total: 16.79 kcal Atomic # 6 Polarization: -10.49 SS G_CDS: 5.83 Total: -4.66 kcal Atomic # 7 Polarization: -102.72 SS G_CDS: -4.34 Total: -107.05 kcal Atomic # 8 Polarization: -24.42 SS G_CDS: 0.37 Total: -24.05 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.42 kcal Total: -75.72 4.16 -71.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000828680685.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.179 kcal (2) G-P(sol) polarization free energy of solvation -75.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds