Wall clock time and date at job start Tue Mar 31 2020 12:33:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50709 * 119.99808 * 2 1 4 4 C 1.52991 * 109.47157 * 0.02562 * 3 2 1 5 5 C 1.52998 * 109.47179 * 239.99913 * 3 2 1 6 6 C 1.53004 * 109.46862 * 120.00512 * 3 2 1 7 7 N 1.46501 * 109.46843 * 180.02562 * 6 3 2 8 8 C 1.34778 * 119.99866 * 180.02562 * 7 6 3 9 9 O 1.21584 * 119.99654 * 359.97438 * 8 7 6 10 10 N 1.34769 * 119.99808 * 179.97438 * 8 7 6 11 11 C 1.46508 * 120.00011 * 179.97438 * 10 8 7 12 12 C 1.50695 * 109.47103 * 179.97438 * 11 10 8 13 13 C 1.38299 * 119.93247 * 90.00118 * 12 11 10 14 14 C 1.38101 * 120.07425 * 179.97438 * 13 12 11 15 15 C 1.38886 * 119.92536 * 0.02562 * 14 13 12 16 16 O 1.35750 * 120.06440 * 180.02562 * 15 14 13 17 17 C 1.34828 * 117.00075 * 5.53777 * 16 15 14 18 18 H 1.07993 * 120.00518 * 354.94289 * 17 16 15 19 19 C 1.38663 * 119.99751 * 174.94575 * 17 16 15 20 20 N 1.31556 * 120.00220 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 119.99821 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47448 * 89.99502 * 21 19 17 23 23 H 1.48501 * 109.47175 * 209.99712 * 21 19 17 24 24 H 1.48506 * 109.47415 * 329.99678 * 21 19 17 25 25 C 1.38874 * 119.86623 * 0.27854 * 15 14 13 26 26 C 1.38106 * 119.92542 * 359.44577 * 25 15 14 27 27 H 1.07997 * 120.00398 * 359.97438 * 1 2 3 28 28 H 1.08004 * 120.00194 * 179.97438 * 1 2 3 29 29 H 1.07997 * 120.00398 * 180.02562 * 2 1 3 30 30 H 1.08998 * 109.47227 * 179.97438 * 4 3 2 31 31 H 1.09005 * 109.47232 * 300.00284 * 4 3 2 32 32 H 1.09002 * 109.47544 * 59.99587 * 4 3 2 33 33 H 1.08999 * 109.47643 * 300.00300 * 5 3 2 34 34 H 1.09005 * 109.47106 * 60.00093 * 5 3 2 35 35 H 1.08998 * 109.47077 * 179.97438 * 5 3 2 36 36 H 1.08994 * 109.47328 * 59.99664 * 6 3 2 37 37 H 1.09002 * 109.46440 * 299.99556 * 6 3 2 38 38 H 0.96996 * 120.00042 * 359.97438 * 7 6 3 39 39 H 0.97001 * 120.00514 * 359.97438 * 10 8 7 40 40 H 1.08998 * 109.46632 * 59.99915 * 11 10 8 41 41 H 1.08996 * 109.47144 * 299.99646 * 11 10 8 42 42 H 1.07999 * 119.96503 * 0.02562 * 13 12 11 43 43 H 1.07992 * 120.03608 * 180.02562 * 14 13 12 44 44 H 0.96996 * 120.00178 * 179.97438 * 20 19 17 45 45 H 1.07996 * 120.03745 * 179.72497 * 25 15 14 46 46 H 1.07997 * 119.96326 * 180.27708 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 1.0692 2.4680 0.0006 5 6 2.9431 1.3863 -1.2492 6 6 2.9432 1.3862 1.2492 7 7 3.6752 2.6552 1.2495 8 6 4.5179 2.9468 2.2601 9 8 4.6702 2.1568 3.1717 10 7 5.1916 4.1140 2.2601 11 6 6.1073 4.4312 3.3589 12 6 6.7292 5.7829 3.1201 13 6 6.1152 6.9213 3.6099 14 6 6.6829 8.1614 3.3932 15 6 7.8715 8.2647 2.6821 16 8 8.4322 9.4823 2.4680 17 6 7.8486 10.5391 3.0682 18 1 6.9291 10.4075 3.6190 19 6 8.4290 11.7952 2.9782 20 7 9.5494 11.9557 2.3076 21 14 7.6208 13.2593 3.8104 22 1 8.1411 13.3912 5.1950 23 1 7.9282 14.4949 3.0463 24 1 6.1503 13.0558 3.8516 25 6 8.4823 7.1204 2.1862 26 6 7.9126 5.8826 2.4112 27 1 -0.5401 0.9352 0.0004 28 1 -0.5401 -0.9353 -0.0004 29 1 1.8500 -0.9352 -0.0004 30 1 1.6142 3.4120 0.0011 31 1 0.4422 2.4105 -0.8891 32 1 0.4428 2.4101 0.8908 33 1 3.6514 0.5578 -1.2493 34 1 2.3164 1.3285 -2.1392 35 1 3.4877 2.3305 -1.2494 36 1 3.6514 0.5577 1.2492 37 1 2.3164 1.3284 2.1392 38 1 3.5539 3.2852 0.5221 39 1 5.0704 4.7441 1.5327 40 1 6.8906 3.6749 3.4089 41 1 5.5557 4.4457 4.2989 42 1 5.1912 6.8403 4.1631 43 1 6.2032 9.0499 3.7762 44 1 9.9552 12.8344 2.2444 45 1 9.4043 7.1979 1.6291 46 1 8.3894 4.9919 2.0296 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000836273004.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:33:30 Heat of formation + Delta-G solvation = -21.182577 kcal Electronic energy + Delta-G solvation = -25287.248359 eV Core-core repulsion = 21563.984182 eV Total energy + Delta-G solvation = -3723.264177 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.18703 -39.15669 -38.36866 -36.85782 -34.34427 -34.12718 -32.37117 -31.06891 -30.28329 -29.75610 -27.75907 -26.91781 -25.71183 -24.51602 -22.28912 -22.05357 -20.78408 -20.61910 -18.97163 -18.23625 -18.06127 -17.07361 -16.38937 -15.90933 -15.70551 -14.99235 -14.82515 -14.69133 -14.50445 -14.42491 -13.94666 -13.74010 -13.71030 -13.63655 -13.34436 -12.81496 -12.78143 -12.61606 -12.31366 -12.13456 -12.00443 -11.68279 -11.50281 -11.40579 -11.24821 -11.03305 -10.96243 -10.78404 -10.69456 -10.49319 -10.18480 -9.77440 -9.43568 -9.27835 -8.91872 -8.73248 -8.28722 -7.33463 -6.53653 -4.12524 1.85810 2.04663 2.12756 2.89850 3.08298 3.09588 3.13585 3.27804 3.89755 4.22391 4.31995 4.37300 4.49057 4.58625 4.81421 4.94286 5.00759 5.16277 5.18444 5.24368 5.32476 5.37971 5.38339 5.45221 5.53438 5.61114 5.65607 5.67225 5.82607 5.84072 5.86766 5.95683 6.11913 6.21534 6.35311 6.36820 6.40334 6.58307 6.62486 6.80119 6.89735 6.99605 7.15657 7.27793 7.34773 7.71232 7.91079 8.06198 8.65353 8.91723 9.59953 10.63871 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.022508 B = 0.002000 C = 0.001941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.676674 B =13996.071686 C =14423.226738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.142 4.142 3 C -0.051 4.051 4 C -0.146 4.146 5 C -0.139 4.139 6 C 0.155 3.845 7 N -0.748 5.748 8 C 0.701 3.299 9 O -0.597 6.597 10 N -0.738 5.738 11 C 0.198 3.802 12 C -0.214 4.214 13 C -0.050 4.050 14 C -0.237 4.237 15 C 0.160 3.840 16 O -0.174 6.174 17 C -0.393 4.393 18 H 0.093 0.907 19 C 0.040 3.960 20 N -0.859 5.859 21 Si 0.942 3.058 22 H -0.272 1.272 23 H -0.277 1.277 24 H -0.267 1.267 25 C -0.196 4.196 26 C -0.054 4.054 27 H 0.104 0.896 28 H 0.097 0.903 29 H 0.111 0.889 30 H 0.058 0.942 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.059 0.941 35 H 0.059 0.941 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.395 0.605 39 H 0.396 0.604 40 H 0.064 0.936 41 H 0.064 0.936 42 H 0.108 0.892 43 H 0.128 0.872 44 H 0.271 0.729 45 H 0.118 0.882 46 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.124 -18.177 -5.827 24.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.161 4.161 3 C -0.051 4.051 4 C -0.203 4.203 5 C -0.196 4.196 6 C 0.030 3.970 7 N -0.406 5.406 8 C 0.400 3.600 9 O -0.476 6.476 10 N -0.393 5.393 11 C 0.075 3.925 12 C -0.215 4.215 13 C -0.069 4.069 14 C -0.257 4.257 15 C 0.106 3.894 16 O -0.076 6.076 17 C -0.469 4.469 18 H 0.111 0.889 19 C -0.165 4.165 20 N -0.494 5.494 21 Si 0.767 3.233 22 H -0.198 1.198 23 H -0.202 1.202 24 H -0.191 1.191 25 C -0.215 4.215 26 C -0.073 4.073 27 H 0.122 0.878 28 H 0.115 0.885 29 H 0.129 0.871 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.229 0.771 39 H 0.230 0.770 40 H 0.082 0.918 41 H 0.082 0.918 42 H 0.126 0.874 43 H 0.146 0.854 44 H 0.081 0.919 45 H 0.136 0.864 46 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -14.600 -18.622 -5.151 24.217 hybrid contribution -0.532 1.349 -0.251 1.471 sum -15.132 -17.273 -5.402 23.591 Atomic orbital electron populations 1.24032 0.96089 1.02262 1.00489 1.22756 0.95831 0.97206 1.00277 1.19930 0.95482 0.94227 0.95483 1.21979 0.98856 0.97227 1.02250 1.21830 0.99179 1.02302 0.96284 1.21101 0.93819 0.85312 0.96764 1.45174 1.47545 1.22068 1.25779 1.16015 0.79060 0.82396 0.82489 1.90908 1.69524 1.49830 1.37363 1.45504 1.47069 1.19097 1.27663 1.19818 0.91003 0.93357 0.88311 1.19228 0.99230 0.93591 1.09455 1.20651 0.97745 0.91708 0.96795 1.21162 0.98814 0.98018 1.07684 1.19442 0.91235 0.86865 0.91888 1.83977 1.50413 1.11381 1.61852 1.21354 1.08192 0.84787 1.32609 0.88922 1.25321 0.95963 0.98204 0.96997 1.70033 1.17117 1.24307 1.37898 0.85694 0.79179 0.79505 0.78964 1.19786 1.20197 1.19149 1.20215 1.02630 0.90382 1.08282 1.20542 0.94370 0.96069 0.96272 0.87797 0.88469 0.87100 0.92264 0.91998 0.91977 0.92120 0.92209 0.92235 0.91571 0.91610 0.77055 0.76978 0.91752 0.91797 0.87392 0.85439 0.91882 0.86392 0.86948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.12 13.70 29.02 0.40 -0.72 16 2 C -0.14 -0.90 8.76 -36.02 -0.32 -1.22 16 3 C -0.05 -0.33 0.75 -155.66 -0.12 -0.45 16 4 C -0.15 -0.89 6.95 37.15 0.26 -0.63 16 5 C -0.14 -0.84 8.28 37.16 0.31 -0.53 16 6 C 0.15 1.40 4.55 -4.04 -0.02 1.38 16 7 N -0.75 -7.32 4.96 -65.23 -0.32 -7.65 16 8 C 0.70 9.51 8.57 -86.92 -0.74 8.77 16 9 O -0.60 -10.54 16.34 5.29 0.09 -10.46 16 10 N -0.74 -9.32 5.55 -66.42 -0.37 -9.68 16 11 C 0.20 2.82 5.80 -5.19 -0.03 2.79 16 12 C -0.21 -3.41 5.25 -104.58 -0.55 -3.96 16 13 C -0.05 -0.86 9.69 -39.61 -0.38 -1.25 16 14 C -0.24 -4.89 9.17 -39.39 -0.36 -5.25 16 15 C 0.16 3.70 6.65 -39.11 -0.26 3.44 16 16 O -0.17 -4.80 9.76 0.05 0.00 -4.80 16 17 C -0.39 -10.66 9.49 30.89 0.29 -10.37 16 18 H 0.09 2.31 5.20 -52.49 -0.27 2.04 16 19 C 0.04 1.07 5.49 -17.51 -0.10 0.98 16 20 N -0.86 -24.60 13.67 55.48 0.76 -23.84 16 21 Si 0.94 19.98 29.55 -169.99 -5.02 14.96 16 22 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 23 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 24 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 25 C -0.20 -3.92 9.99 -39.39 -0.39 -4.31 16 26 C -0.05 -0.90 9.69 -39.61 -0.38 -1.28 16 27 H 0.10 0.57 5.69 -52.49 -0.30 0.27 16 28 H 0.10 0.48 8.06 -52.48 -0.42 0.06 16 29 H 0.11 0.65 8.06 -52.49 -0.42 0.22 16 30 H 0.06 0.36 6.86 -51.93 -0.36 0.00 16 31 H 0.06 0.34 7.50 -51.93 -0.39 -0.05 16 32 H 0.06 0.40 7.50 -51.93 -0.39 0.01 16 33 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.06 0.35 6.86 -51.93 -0.36 0.00 16 36 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.39 2.97 6.18 -40.82 -0.25 2.72 16 39 H 0.40 4.34 8.48 -40.82 -0.35 4.00 16 40 H 0.06 0.93 8.08 -51.93 -0.42 0.51 16 41 H 0.06 0.94 8.08 -51.93 -0.42 0.52 16 42 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 43 H 0.13 2.65 5.64 -52.49 -0.30 2.35 16 44 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 45 H 0.12 2.29 8.06 -52.49 -0.42 1.87 16 46 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 LS Contribution 381.18 15.07 5.74 5.74 Total: -1.00 -31.69 381.18 -8.26 -39.95 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: -6.74 Total: 8.39 kcal Atomic # 6 Polarization: -10.23 SS G_CDS: -2.40 Total: -12.62 kcal Atomic # 7 Polarization: -41.23 SS G_CDS: 0.07 Total: -41.17 kcal Atomic # 8 Polarization: -15.34 SS G_CDS: 0.09 Total: -15.25 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -5.02 Total: 14.96 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -31.69 -8.26 -39.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000836273004.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.768 kcal (2) G-P(sol) polarization free energy of solvation -31.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds