Wall clock time and date at job start Tue Mar 31 2020 12:33:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50709 * 119.99808 * 2 1 4 4 C 1.52991 * 109.47157 * 0.02562 * 3 2 1 5 5 C 1.52998 * 109.47179 * 239.99913 * 3 2 1 6 6 C 1.53004 * 109.46862 * 120.00512 * 3 2 1 7 7 N 1.46501 * 109.46843 * 180.02562 * 6 3 2 8 8 C 1.34778 * 119.99866 * 180.02562 * 7 6 3 9 9 O 1.21584 * 119.99654 * 359.97438 * 8 7 6 10 10 N 1.34769 * 119.99808 * 179.97438 * 8 7 6 11 11 C 1.46508 * 120.00011 * 179.97438 * 10 8 7 12 12 C 1.50695 * 109.47103 * 179.97438 * 11 10 8 13 13 C 1.38299 * 119.93247 * 90.00118 * 12 11 10 14 14 C 1.38101 * 120.07425 * 179.97438 * 13 12 11 15 15 C 1.38886 * 119.92536 * 0.02562 * 14 13 12 16 16 O 1.35750 * 120.06440 * 180.02562 * 15 14 13 17 17 C 1.34828 * 117.00075 * 5.53777 * 16 15 14 18 18 H 1.07993 * 120.00518 * 354.94289 * 17 16 15 19 19 C 1.38663 * 119.99751 * 174.94575 * 17 16 15 20 20 N 1.31556 * 120.00220 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 119.99821 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47448 * 89.99502 * 21 19 17 23 23 H 1.48501 * 109.47175 * 209.99712 * 21 19 17 24 24 H 1.48506 * 109.47415 * 329.99678 * 21 19 17 25 25 C 1.38874 * 119.86623 * 0.27854 * 15 14 13 26 26 C 1.38106 * 119.92542 * 359.44577 * 25 15 14 27 27 H 1.07997 * 120.00398 * 359.97438 * 1 2 3 28 28 H 1.08004 * 120.00194 * 179.97438 * 1 2 3 29 29 H 1.07997 * 120.00398 * 180.02562 * 2 1 3 30 30 H 1.08998 * 109.47227 * 179.97438 * 4 3 2 31 31 H 1.09005 * 109.47232 * 300.00284 * 4 3 2 32 32 H 1.09002 * 109.47544 * 59.99587 * 4 3 2 33 33 H 1.08999 * 109.47643 * 300.00300 * 5 3 2 34 34 H 1.09005 * 109.47106 * 60.00093 * 5 3 2 35 35 H 1.08998 * 109.47077 * 179.97438 * 5 3 2 36 36 H 1.08994 * 109.47328 * 59.99664 * 6 3 2 37 37 H 1.09002 * 109.46440 * 299.99556 * 6 3 2 38 38 H 0.96996 * 120.00042 * 359.97438 * 7 6 3 39 39 H 0.97001 * 120.00514 * 359.97438 * 10 8 7 40 40 H 1.08998 * 109.46632 * 59.99915 * 11 10 8 41 41 H 1.08996 * 109.47144 * 299.99646 * 11 10 8 42 42 H 1.07999 * 119.96503 * 0.02562 * 13 12 11 43 43 H 1.07992 * 120.03608 * 180.02562 * 14 13 12 44 44 H 0.96996 * 120.00178 * 179.97438 * 20 19 17 45 45 H 1.07996 * 120.03745 * 179.72497 * 25 15 14 46 46 H 1.07997 * 119.96326 * 180.27708 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 1.0692 2.4680 0.0006 5 6 2.9431 1.3863 -1.2492 6 6 2.9432 1.3862 1.2492 7 7 3.6752 2.6552 1.2495 8 6 4.5179 2.9468 2.2601 9 8 4.6702 2.1568 3.1717 10 7 5.1916 4.1140 2.2601 11 6 6.1073 4.4312 3.3589 12 6 6.7292 5.7829 3.1201 13 6 6.1152 6.9213 3.6099 14 6 6.6829 8.1614 3.3932 15 6 7.8715 8.2647 2.6821 16 8 8.4322 9.4823 2.4680 17 6 7.8486 10.5391 3.0682 18 1 6.9291 10.4075 3.6190 19 6 8.4290 11.7952 2.9782 20 7 9.5494 11.9557 2.3076 21 14 7.6208 13.2593 3.8104 22 1 8.1411 13.3912 5.1950 23 1 7.9282 14.4949 3.0463 24 1 6.1503 13.0558 3.8516 25 6 8.4823 7.1204 2.1862 26 6 7.9126 5.8826 2.4112 27 1 -0.5401 0.9352 0.0004 28 1 -0.5401 -0.9353 -0.0004 29 1 1.8500 -0.9352 -0.0004 30 1 1.6142 3.4120 0.0011 31 1 0.4422 2.4105 -0.8891 32 1 0.4428 2.4101 0.8908 33 1 3.6514 0.5578 -1.2493 34 1 2.3164 1.3285 -2.1392 35 1 3.4877 2.3305 -1.2494 36 1 3.6514 0.5577 1.2492 37 1 2.3164 1.3284 2.1392 38 1 3.5539 3.2852 0.5221 39 1 5.0704 4.7441 1.5327 40 1 6.8906 3.6749 3.4089 41 1 5.5557 4.4457 4.2989 42 1 5.1912 6.8403 4.1631 43 1 6.2032 9.0499 3.7762 44 1 9.9552 12.8344 2.2444 45 1 9.4043 7.1979 1.6291 46 1 8.3894 4.9919 2.0296 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000836273004.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:33:29 Heat of formation + Delta-G solvation = -41.268958 kcal Electronic energy + Delta-G solvation = -25288.119370 eV Core-core repulsion = 21563.984182 eV Total energy + Delta-G solvation = -3724.135187 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.23691 -40.72752 -39.16054 -38.42546 -35.60418 -35.00623 -34.25684 -31.87921 -31.75885 -30.99822 -28.24023 -27.95316 -27.32133 -25.85535 -23.63736 -22.98480 -22.11334 -21.73775 -19.93372 -19.77782 -18.96545 -18.74004 -17.42532 -16.81054 -16.55515 -16.33942 -16.27665 -15.85498 -15.70886 -15.49624 -15.42084 -15.11424 -14.89751 -14.48034 -14.36226 -14.29358 -14.11126 -13.65740 -13.32876 -13.08411 -13.02567 -12.83539 -12.59713 -12.54095 -12.35468 -12.23554 -12.10526 -12.04727 -11.79953 -11.54520 -11.35799 -11.19911 -10.80383 -10.34568 -10.25749 -9.81333 -9.70337 -9.01258 -8.48053 -6.16150 0.53426 0.58516 1.36126 1.37657 1.44556 1.53000 1.90672 2.17279 2.19834 2.81422 3.13597 3.46292 3.50627 3.76134 3.82558 3.89486 3.93637 4.04567 4.18410 4.29525 4.46226 4.48351 4.57811 4.67653 4.68710 4.78076 4.81984 4.82985 4.89892 4.97920 5.04846 5.05963 5.15056 5.15636 5.27539 5.35090 5.38810 5.48406 5.52945 5.54446 5.69657 5.76695 5.77739 5.90975 6.01813 6.03986 6.17100 6.96827 7.11673 7.61445 7.76167 8.74707 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.022508 B = 0.002000 C = 0.001941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.676674 B =13996.071686 C =14423.226738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.155 4.155 3 C -0.042 4.042 4 C -0.146 4.146 5 C -0.138 4.138 6 C 0.156 3.844 7 N -0.731 5.731 8 C 0.700 3.300 9 O -0.638 6.638 10 N -0.731 5.731 11 C 0.204 3.796 12 C -0.180 4.180 13 C -0.045 4.045 14 C -0.244 4.244 15 C 0.123 3.877 16 O -0.229 6.229 17 C -0.413 4.413 18 H 0.104 0.896 19 C -0.022 4.022 20 N -0.918 5.918 21 Si 1.018 2.982 22 H -0.265 1.265 23 H -0.272 1.272 24 H -0.252 1.252 25 C -0.204 4.204 26 C -0.043 4.043 27 H 0.108 0.892 28 H 0.106 0.894 29 H 0.113 0.887 30 H 0.061 0.939 31 H 0.071 0.929 32 H 0.057 0.943 33 H 0.056 0.944 34 H 0.066 0.934 35 H 0.062 0.938 36 H 0.056 0.944 37 H 0.052 0.948 38 H 0.408 0.592 39 H 0.407 0.593 40 H 0.069 0.931 41 H 0.066 0.934 42 H 0.139 0.861 43 H 0.120 0.880 44 H 0.273 0.727 45 H 0.115 0.885 46 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.490 -19.871 -5.803 27.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.174 4.174 3 C -0.042 4.042 4 C -0.203 4.203 5 C -0.195 4.195 6 C 0.031 3.969 7 N -0.389 5.389 8 C 0.399 3.601 9 O -0.520 6.520 10 N -0.386 5.386 11 C 0.080 3.920 12 C -0.182 4.182 13 C -0.063 4.063 14 C -0.263 4.263 15 C 0.072 3.928 16 O -0.135 6.135 17 C -0.489 4.489 18 H 0.121 0.879 19 C -0.220 4.220 20 N -0.556 5.556 21 Si 0.837 3.163 22 H -0.190 1.190 23 H -0.197 1.197 24 H -0.175 1.175 25 C -0.224 4.224 26 C -0.061 4.061 27 H 0.126 0.874 28 H 0.124 0.876 29 H 0.131 0.869 30 H 0.080 0.920 31 H 0.090 0.910 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.085 0.915 35 H 0.080 0.920 36 H 0.075 0.925 37 H 0.071 0.929 38 H 0.245 0.755 39 H 0.243 0.757 40 H 0.087 0.913 41 H 0.085 0.915 42 H 0.156 0.844 43 H 0.138 0.862 44 H 0.082 0.918 45 H 0.133 0.867 46 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -17.015 -20.361 -5.164 27.032 hybrid contribution 0.073 1.450 -0.271 1.477 sum -16.942 -18.911 -5.435 25.965 Atomic orbital electron populations 1.24184 0.95990 1.02947 0.99404 1.22811 0.96132 0.97186 1.01238 1.19847 0.95228 0.94762 0.94391 1.21984 0.98801 0.96961 1.02541 1.21831 0.99158 1.02309 0.96222 1.21135 0.93609 0.84495 0.97612 1.45043 1.46258 1.22493 1.25079 1.16117 0.79317 0.82024 0.82612 1.90889 1.70902 1.51095 1.39146 1.45228 1.46658 1.19189 1.27547 1.19699 0.91426 0.91865 0.88965 1.19482 0.98074 0.94226 1.06386 1.20938 0.98546 0.90520 0.96321 1.21244 0.98216 0.99323 1.07515 1.19995 0.92644 0.86535 0.93654 1.83947 1.52392 1.12818 1.64365 1.21828 1.08765 0.85405 1.32913 0.87897 1.26579 0.96574 1.01196 0.97643 1.70176 1.19470 1.25111 1.40870 0.84597 0.78739 0.75187 0.77787 1.18984 1.19672 1.17529 1.20446 1.02836 0.90846 1.08247 1.20879 0.94235 0.95788 0.95194 0.87382 0.87604 0.86866 0.92023 0.91017 0.92411 0.92445 0.91452 0.91952 0.92531 0.92911 0.75458 0.75716 0.91265 0.91536 0.84369 0.86186 0.91817 0.86666 0.83530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.83 13.70 67.79 0.93 -0.90 16 2 C -0.16 -1.70 8.76 25.66 0.22 -1.48 16 3 C -0.04 -0.47 0.75 -52.93 -0.04 -0.51 16 4 C -0.15 -1.44 6.95 71.98 0.50 -0.94 16 5 C -0.14 -1.37 8.28 71.98 0.60 -0.77 16 6 C 0.16 2.59 4.55 86.38 0.39 2.98 16 7 N -0.73 -12.59 4.96 -478.54 -2.37 -14.96 16 8 C 0.70 17.22 8.57 179.06 1.53 18.75 16 9 O -0.64 -21.34 16.34 -3.98 -0.07 -21.41 16 10 N -0.73 -15.93 5.55 -482.31 -2.68 -18.61 16 11 C 0.20 5.04 5.80 85.63 0.50 5.54 16 12 C -0.18 -5.16 5.25 -19.84 -0.10 -5.26 16 13 C -0.04 -1.42 9.69 22.25 0.22 -1.20 16 14 C -0.24 -9.95 9.17 22.39 0.21 -9.75 16 15 C 0.12 5.80 6.65 22.58 0.15 5.95 16 16 O -0.23 -13.35 9.76 -22.72 -0.22 -13.57 16 17 C -0.41 -23.35 9.49 67.92 0.64 -22.70 16 18 H 0.10 5.30 5.20 -2.91 -0.02 5.29 16 19 C -0.02 -1.23 5.49 84.84 0.47 -0.76 16 20 N -0.92 -55.30 13.67 21.62 0.30 -55.00 16 21 Si 1.02 41.83 29.55 68.60 2.03 43.86 16 22 H -0.26 -10.42 7.11 99.48 0.71 -9.72 16 23 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 24 H -0.25 -9.55 7.11 99.48 0.71 -8.84 16 25 C -0.20 -8.14 9.99 22.39 0.22 -7.92 16 26 C -0.04 -1.31 9.69 22.25 0.22 -1.09 16 27 H 0.11 0.95 5.69 -2.91 -0.02 0.93 16 28 H 0.11 0.83 8.06 -2.91 -0.02 0.81 16 29 H 0.11 1.17 8.06 -2.91 -0.02 1.14 16 30 H 0.06 0.57 6.86 -2.39 -0.02 0.56 16 31 H 0.07 0.59 7.50 -2.38 -0.02 0.57 16 32 H 0.06 0.63 7.50 -2.39 -0.02 0.61 16 33 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.07 0.59 8.14 -2.38 -0.02 0.57 16 35 H 0.06 0.57 6.86 -2.39 -0.02 0.56 16 36 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.41 4.94 6.18 -92.71 -0.57 4.37 16 39 H 0.41 7.36 8.48 -92.71 -0.79 6.58 16 40 H 0.07 1.73 8.08 -2.39 -0.02 1.71 16 41 H 0.07 1.70 8.08 -2.39 -0.02 1.68 16 42 H 0.14 3.61 8.06 -2.91 -0.02 3.58 16 43 H 0.12 5.02 5.64 -2.91 -0.02 5.01 16 44 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 45 H 0.12 4.57 8.06 -2.91 -0.02 4.55 16 46 H 0.15 3.57 8.06 -2.91 -0.02 3.54 16 Total: -1.00 -72.67 381.18 3.27 -69.40 By element: Atomic # 1 Polarization: 30.72 SS G_CDS: -0.36 Total: 30.36 kcal Atomic # 6 Polarization: -26.72 SS G_CDS: 6.65 Total: -20.07 kcal Atomic # 7 Polarization: -83.81 SS G_CDS: -4.76 Total: -88.57 kcal Atomic # 8 Polarization: -34.69 SS G_CDS: -0.29 Total: -34.98 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 2.03 Total: 43.86 kcal Total: -72.67 3.27 -69.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000836273004.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.131 kcal (2) G-P(sol) polarization free energy of solvation -72.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds